=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdY8E5LS/inputs/mdtraj_1.11.0-1_arm64.buildinfo Source: mdtraj Version: 1.11.0-1 rebuilderd-worker node: codethink02-arm64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 03 Oct 2025 17:47:09 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [55.8 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [53.8 kB] Get:6 https://deb.debian.org/debian forky InRelease [147 kB] Get:7 https://deb.debian.org/debian sid InRelease [207 kB] Get:8 https://deb.debian.org/debian experimental InRelease [101 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6536 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [55.5 kB] Get:12 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:13 https://deb.debian.org/debian trixie-proposed-updates/main Sources [22.3 kB] Get:14 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [1052 B] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [54.0 kB] Get:16 https://deb.debian.org/debian forky/non-free-firmware Sources [7128 B] Get:17 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:18 https://deb.debian.org/debian sid/non-free-firmware Sources [9100 B] Get:19 https://deb.debian.org/debian sid/main Sources [11.1 MB] Get:20 https://deb.debian.org/debian experimental/non-free-firmware Sources [2572 B] Get:21 https://deb.debian.org/debian experimental/main Sources [375 kB] Fetched 33.7 MB in 3s (10.6 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.0-1.dsc' mdtraj_1.11.0-1.dsc 2856 SHA256:82ed97fa226d954fff22032e1f73571e5ea26304996efc992b7a8f0c96db2578 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.0.orig.tar.gz' mdtraj_1.11.0.orig.tar.gz 22723159 SHA256:fefca787f882d0716a7aeb01b4d8e30caddbd2be0b2893acfa7201c31d13c786 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.0-1.debian.tar.xz' mdtraj_1.11.0-1.debian.tar.xz 298656 SHA256:adea16845a36ab69788ef02c54702a4fb881868452a22766fd4a0e67c93db9a3 fefca787f882d0716a7aeb01b4d8e30caddbd2be0b2893acfa7201c31d13c786 mdtraj_1.11.0.orig.tar.gz adea16845a36ab69788ef02c54702a4fb881868452a22766fd4a0e67c93db9a3 mdtraj_1.11.0-1.debian.tar.xz 82ed97fa226d954fff22032e1f73571e5ea26304996efc992b7a8f0c96db2578 mdtraj_1.11.0-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 03 Oct 2025 17:47:14 +0000 | +------------------------------------------------------------------------------+ Rebuilding mdtraj=1.11.0-1 in /srv/rebuilderd/tmp/rebuilderdY8E5LS/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdY8E5LS/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdY8E5LS/inputs/mdtraj_1.11.0-1_arm64.buildinfo /srv/rebuilderd/tmp/rebuilderdY8E5LS/inputs/mdtraj_1.11.0-1_arm64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mdtraj-1.11.0 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky InRelease [145 kB] Get:2 http://snapshot.debian.org/archive/debian/20250827T144740Z forky InRelease [146 kB] Get:3 http://snapshot.debian.org/archive/debian/20251003T022949Z forky InRelease [147 kB] Get:4 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 Packages [9664 kB] Get:5 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 Packages [9732 kB] Get:6 http://snapshot.debian.org/archive/debian/20251003T022949Z forky/main arm64 Packages [9684 kB] Fetched 29.5 MB in 3s (10.8 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250816T204950Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20250827T144740Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20251003T022949Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libgcc-s1 arm64 15.2.0-1 [53.4 kB] Fetched 53.4 kB in 0s (3378 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1cqsiqr1/libgcc-s1_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (38.1 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpl06dyosz/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 debhelper all 13.25 [937 kB] Fetched 937 kB in 0s (41.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp91kq4h0n/debhelper_13.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Fetched 20.1 kB in 0s (1264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdwa8te3j/libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Fetched 409 kB in 0s (21.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4c3163mn/libp11-kit0_0.25.5-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 linux-libc-dev all 6.12.38-1 [2627 kB] Fetched 2627 kB in 0s (73.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzx0yehn/linux-libc-dev_6.12.38-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 base-files arm64 14 [72.9 kB] Fetched 72.9 kB in 0s (4596 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpequ0e201/base-files_14_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (52.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwe8_z3oh/dpkg-dev_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1482 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpufdjei6f/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 g++-14 arm64 14.2.0-19 [22.5 kB] Fetched 22.5 kB in 0s (1495 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpckna160k/g++-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Fetched 72.2 kB in 0s (4597 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprnifba_r/python3-requests_2.32.3+dfsg-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 ncurses-bin arm64 6.5+20250216-2 [432 kB] Fetched 432 kB in 0s (23.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7p55fu32/ncurses-bin_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (539 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptih8jf10/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libcurl3t64-gnutls arm64 8.15.0-1 [355 kB] Fetched 355 kB in 0s (19.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvvtukjdo/libcurl3t64-gnutls_8.15.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Fetched 28.2 kB in 0s (1850 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphnus08r9/libngtcp2-crypto-gnutls8_1.11.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pytz all 2025.2-3 [152 kB] Fetched 152 kB in 0s (9354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzt11yd6u/python3-pytz_2025.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Fetched 63.5 kB in 0s (4031 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptbjvdpt8/python3-snowballstemmer_3.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 dwz arm64 0.15-1+b1 [102 kB] Fetched 102 kB in 0s (6394 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz75c9_sc/dwz_0.15-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libcrypt1 arm64 1:4.4.38-1 [91.8 kB] Fetched 91.8 kB in 0s (5868 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp98hkw0vv/libcrypt1_4.4.38-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Fetched 120 kB in 0s (7339 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3xlcs014/python3-charset-normalizer_3.4.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Fetched 1155 kB in 0s (48.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqcdbqkef/libhdf5-310_1.14.5+repack-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Fetched 9716 B in 0s (635 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5zfkgupx/libkeyutils1_1.6.3-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 liblsan0 arm64 15.2.0-1 [1194 kB] Fetched 1194 kB in 0s (48.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgopl5m3x/liblsan0_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpam-modules arm64 1.7.0-5 [172 kB] Fetched 172 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37mw796m/libpam-modules_1.7.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-gsd arm64 4.0.0-1 [199 kB] Fetched 199 kB in 0s (611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpasjtqtb4/python3-gsd_4.0.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Fetched 159 kB in 0s (9943 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp35hrxd1e/libreadline8t64_8.2-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Fetched 93.3 kB in 0s (5943 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg6sfroop/libexpat1_2.7.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsframe2 arm64 2.45-3 [78.7 kB] Fetched 78.7 kB in 0s (3256 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6m9jqv77/libsframe2_2.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (4550 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbb569bbj/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 dh-python all 6.20250414 [116 kB] Fetched 116 kB in 0s (7236 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp26_vf6bf/dh-python_6.20250414_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-bleach all 6.2.0-1 [51.2 kB] Fetched 51.2 kB in 0s (3287 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0jukoqo/python3-bleach_6.2.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jsonschema all 4.19.2-6 [71.4 kB] Fetched 71.4 kB in 0s (4586 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzli6m5mf/python3-jsonschema_4.19.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (1119 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfvqidvmm/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Fetched 145 kB in 0s (8876 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuhuuximm/libexpat1-dev_2.7.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 sphinx-common all 8.1.3-5 [617 kB] Fetched 617 kB in 0s (31.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6weauax8/sphinx-common_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Fetched 107 kB in 0s (6890 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2k7yych8/python3-jinja2_3.1.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB] Fetched 60.5 kB in 0s (3906 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37jzws55/rpcsvc-proto_1.4.3-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 python3-typing-extensions all 4.14.1-1 [91.3 kB] Fetched 91.3 kB in 0s (5839 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_g23bkqw/python3-typing-extensions_4.14.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpython3-all-dev arm64 3.13.5-1 [1068 B] Fetched 1068 B in 0s (71.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2e97u9t_/libpython3-all-dev_3.13.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Fetched 179 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_lym3l2/libldap2_2.6.10+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libuuid1 arm64 2.41-5 [37.4 kB] Fetched 37.4 kB in 0s (2415 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpla9tgsc1/libuuid1_2.41-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 tzdata all 2025b-4 [260 kB] Fetched 260 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmponqp7kch/tzdata_2025b-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-tinycss2 all 1.4.0-2 [25.0 kB] Fetched 25.0 kB in 0s (1630 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppsojv6mm/python3-tinycss2_1.4.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Fetched 2210 kB in 0s (68.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvd4f95tl/fonts-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-9 [3877 kB] Fetched 3877 kB in 0s (85.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ts5vu8n/python3-pandas-lib_2.2.3+dfsg-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (560 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptlk1pi77/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpam-modules-bin arm64 1.7.0-5 [48.3 kB] Fetched 48.3 kB in 0s (3130 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ifnjlv6/libpam-modules-bin_1.7.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 binutils-aarch64-linux-gnu arm64 2.45-3 [843 kB] Fetched 843 kB in 0s (38.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp83qx83hp/binutils-aarch64-linux-gnu_2.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 liblz4-1 arm64 1.10.0-4 [60.0 kB] Fetched 60.0 kB in 0s (3882 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy22pmjde/liblz4-1_1.10.0-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libtsan2 arm64 15.2.0-1 [2400 kB] Fetched 2400 kB in 0s (69.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1tjcmp1f/libtsan2_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtu2mj2s/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 sysvinit-utils arm64 3.14-4 [34.0 kB] Fetched 34.0 kB in 0s (2208 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpivukq94b/sysvinit-utils_3.14-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 base-passwd arm64 3.6.7 [53.4 kB] Fetched 53.4 kB in 0s (3476 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4yw9iesm/base-passwd_3.6.7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Fetched 108 kB in 0s (6528 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk2ut08qv/python3-chardet_5.2.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-html5lib all 1.2-2 [92.1 kB] Fetched 92.1 kB in 0s (5885 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjoojizzr/python3-html5lib_1.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-all-dev arm64 3.13.5-1 [1068 B] Fetched 1068 B in 0s (68.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoupba1we/python3-all-dev_3.13.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-idna all 3.10-1 [42.0 kB] Fetched 42.0 kB in 0s (2735 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqh7pe53g/python3-idna_3.10-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Fetched 1453 kB in 0s (54.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdo_lu32/man-db_2.13.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libjansson4 arm64 2.14-2+b3 [39.2 kB] Fetched 39.2 kB in 0s (2537 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoaxlte17/libjansson4_2.14-2+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-roman all 5.0-1 [10.6 kB] Fetched 10.6 kB in 0s (693 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphudhrdzw/python3-roman_5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Fetched 21.3 kB in 0s (1354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpazht5bcg/libffi8_3.4.8-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (27.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpstdu3h1g/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 grep arm64 3.11-4+b1 [426 kB] Fetched 426 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphcj41k51/grep_3.11-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (2091 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx0_apvbq/python3-inflect_7.3.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Fetched 47.3 kB in 0s (3012 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpms37hsgz/libtasn1-6_4.20.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-rpds-py arm64 0.21.0-2+b1 [226 kB] Fetched 226 kB in 0s (5602 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmo1f5dlx/python3-rpds-py_0.21.0-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Fetched 37.3 kB in 0s (2398 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0s9n2fi/python3-typeguard_4.4.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (2528 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9hpp1ee/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libbsd0 arm64 0.12.2-2 [129 kB] Fetched 129 kB in 0s (8113 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8g1lkcc/libbsd0_0.12.2-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 util-linux arm64 2.41-5 [1191 kB] Fetched 1191 kB in 0s (48.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwznijw2u/util-linux_2.41-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libssl3t64 arm64 3.5.2-1 [2750 kB] Fetched 2750 kB in 0s (72.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpug4_krt5/libssl3t64_3.5.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Fetched 23.5 kB in 0s (1497 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo6tg01bw/python3-cpuinfo_9.0.0+git20221119-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsodium23 arm64 1.0.18-1+b2 [121 kB] Fetched 121 kB in 0s (7585 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdl7n9pl_/libsodium23_1.0.18-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-nbformat all 5.9.1-1 [45.1 kB] Fetched 45.1 kB in 0s (2943 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnedyh63h/python3-nbformat_5.9.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pytest all 8.3.5-2 [250 kB] Fetched 250 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6vf25uqh/python3-pytest_8.3.5-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libncursesw6 arm64 6.5+20250216-2 [124 kB] Fetched 124 kB in 0s (7508 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyc_98bqy/libncursesw6_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsmartcols1 arm64 2.41-5 [139 kB] Fetched 139 kB in 0s (8502 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3pytcd8/libsmartcols1_2.41-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 debianutils arm64 5.23.2 [92.4 kB] Fetched 92.4 kB in 0s (5746 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpso7vgvlb/debianutils_5.23.2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 mawk arm64 1.3.4.20250131-1 [134 kB] Fetched 134 kB in 0s (8293 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsvh98re/mawk_1.3.4.20250131-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Fetched 67.4 kB in 0s (4320 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp76_sfmvc/python3-more-itertools_10.7.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 cpp-14 arm64 14.2.0-19 [1276 B] Fetched 1276 B in 0s (84.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi8obmh6g/cpp-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jupyterlab-pygments all 0.2.2-3 [6096 B] Fetched 6096 B in 0s (408 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0fm7g0nl/python3-jupyterlab-pygments_0.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (18.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdm4ops77/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Fetched 308 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp34n5td_a/libbrotli1_1.1.0-2+b7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (766 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2z49a8z/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B] Fetched 1440 B in 0s (96.5 kB/s) dpkg-name: info: moved 'gcc-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpkujdi0i3/gcc-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Fetched 116 kB in 0s (7195 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphbf1bta8/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libgdbm-compat4t64 arm64 1.24-2 [50.3 kB] Fetched 50.3 kB in 0s (3203 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm11xgun4/libgdbm-compat4t64_1.24-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libnettle8t64 arm64 3.10.1-1 [311 kB] Fetched 311 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps00yus4a/libnettle8t64_3.10.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqluqbqp9/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Fetched 43.7 kB in 0s (2833 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmpaage63fk/file_5.46-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 0s (2119 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphm391_y2/python3-decorator_5.2.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 hostname arm64 3.25 [10.8 kB] Fetched 10.8 kB in 0s (705 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxc8251b1/hostname_3.25_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-2.1 [630 kB] Fetched 630 kB in 0s (31.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfsl34z2x/libxml2_2.12.7+dfsg+really2.9.14-2.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Fetched 453 kB in 0s (23.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4zcip1xd/libunistring5_1.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 build-essential arm64 12.12 [4624 B] Fetched 4624 B in 0s (305 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoubvaclk/build-essential_12.12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 liblastlog2-2 arm64 2.41-5 [28.3 kB] Fetched 28.3 kB in 0s (1861 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnj6o904m/liblastlog2-2_2.41-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 coreutils arm64 9.7-3 [2949 kB] Fetched 2949 kB in 0s (76.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxp9elg4/coreutils_9.7-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-9 [629 kB] Fetched 629 kB in 0s (30.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp9otzxrc/libdb5.3t64_5.3.28+dfsg2-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Fetched 8044 B in 0s (531 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_cyh86ux/libsz2_1.1.3-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-nbclient all 0.8.0-2 [62.2 kB] Fetched 62.2 kB in 0s (3975 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgjlay97o/python3-nbclient_0.8.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libudev1 arm64 257.7-1 [144 kB] Fetched 144 kB in 0s (8510 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6wyr5ro6/libudev1_257.7-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Fetched 3097 kB in 0s (79.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa4fzoqhj/python3-pandas_2.2.3+dfsg-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 xml-core all 0.19 [20.1 kB] Fetched 20.1 kB in 0s (1314 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1g0ne6gh/xml-core_0.19_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 openssl-provider-legacy arm64 3.5.2-1 [305 kB] Fetched 305 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprehedepb/openssl-provider-legacy_3.5.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libmpc3 arm64 1.3.1-1+b3 [50.5 kB] Fetched 50.5 kB in 0s (3171 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbcnmm70/libmpc3_1.3.1-1+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Fetched 235 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_camd7ju/libssh2-1t64_1.11.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-cftime arm64 1.6.4-2 [183 kB] Fetched 183 kB in 0s (9924 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb3aesw5e/python3-cftime_1.6.4-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libperl5.40 arm64 5.40.1-6 [4142 kB] Fetched 4142 kB in 0s (86.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp69j7yj0b/libperl5.40_5.40.1-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Fetched 189 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_dnr2_hw/libelf1t64_0.192-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libacl1 arm64 2.3.2-2+b1 [32.2 kB] Fetched 32.2 kB in 0s (2120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5h9mcnek/libacl1_2.3.2-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Fetched 32.4 kB in 0s (2058 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcwfpig05/libkrb5support0_1.21.3-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-nbsphinx-link all 1.3.0-4 [6264 B] Fetched 6264 B in 0s (23.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnolmv6oc/python3-nbsphinx-link_1.3.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 gettext arm64 0.23.1-2 [1611 kB] Fetched 1611 kB in 0s (57.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppgpzs_jk/gettext_0.23.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 dash arm64 0.5.12-12 [95.6 kB] Fetched 95.6 kB in 0s (5867 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkrbypqsq/dash_0.5.12-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 gcc-15-base arm64 15.2.0-1 [52.0 kB] Fetched 52.0 kB in 0s (3309 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxj_nimob/gcc-15-base_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [266 kB] Fetched 266 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i7ej9fx/libzstd1_1.5.7+dfsg-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 gzip arm64 1.13-1 [135 kB] Fetched 135 kB in 0s (8293 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjc3e2csx/gzip_1.13-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (25.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpomqp9c3c/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libitm1 arm64 15.2.0-1 [24.2 kB] Fetched 24.2 kB in 0s (1514 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq4dtp5mu/libitm1_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfj2qon61/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 gcc arm64 4:14.2.0-1 [5136 B] Fetched 5136 B in 0s (327 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp602q73q_/gcc_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpam0g arm64 1.7.0-5 [68.8 kB] Fetched 68.8 kB in 0s (4454 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2auxi_r3/libpam0g_1.7.0-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Fetched 22.4 kB in 0s (1436 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphtqj3r87/python3-fastjsonschema_2.21.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251003T022949Z forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Fetched 1395 kB in 0s (52.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprs75ujz1/libgnutls30t64_3.8.10-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpcre2-8-0 arm64 10.45-1 [262 kB] Fetched 262 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkmlr7kit/libpcre2-8-0_10.45-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python-tinycss2-common all 1.4.0-2 [44.7 kB] Fetched 44.7 kB in 0s (2773 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmtk4hagl/python-tinycss2-common_1.4.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libnetcdf22 arm64 1:4.9.3-1 [481 kB] Fetched 481 kB in 0s (25.4 MB/s) dpkg-name: info: moved 'libnetcdf22_1%3a4.9.3-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpck2c4lk4/libnetcdf22_4.9.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 python3.13-dev arm64 3.13.6-1 [505 kB] Fetched 505 kB in 0s (25.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9w3jmsiw/python3.13-dev_3.13.6-1_arm64.deb' Downloading dependency 1 of 310: libgcc-s1:arm64=15.2.0-1 Downloading dependency 2 of 310: automake:arm64=1:1.17-4 Downloading dependency 3 of 310: debhelper:arm64=13.25 Downloading dependency 4 of 310: libsasl2-modules-db:arm64=2.1.28+dfsg1-9 Downloading dependency 5 of 310: libp11-kit0:arm64=0.25.5-3 Downloading dependency 6 of 310: linux-libc-dev:arm64=6.12.38-1 Downloading dependency 7 of 310: base-files:arm64=14 Downloading dependency 8 of 310: dpkg-dev:arm64=1.22.21 Downloading dependency 9 of 310: intltool-debian:arm64=0.35.0+20060710.6 Downloading dependency 10 of 310: g++-14:arm64=14.2.0-19 Downloading dependency 11 of 310: python3-requests:arm64=2.32.3+dfsg-5 Downloading dependency 12 of 310: ncurses-bin:arm64=6.5+20250216-2 Downloading dependency 13 of 310: python3-jaraco.context:arm64=6.0.1-1 Downloading dependency 14 of 310: 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dependency 30 of 310: dh-python:arm64=6.20250414 Downloading dependency 31 of 310: python3-bleach:arm64=6.2.0-1 Downloading dependency 32 of 310: python3-jsonschema:arm64=4.19.2-6 Downloading dependency 33 of 310: dh-autoreconf:arm64=20 Downloading dependency 34 of 310: libexpat1-dev:arm64=2.7.1-2 Downloading dependency 35 of 310: sphinx-common:arm64=8.1.3-5 Downloading dependency 36 of 310: python3-jinja2:arm64=3.1.6-1 Downloading dependency 37 of 310: rpcsvc-proto:arm64=1.4.3-1+b1 Downloading dependency 38 of 310: python3-typing-extensions:arm64=4.14.1-1 Downloading dependency 39 of 310: libpython3-all-dev:arm64=3.13.5-1 Downloading dependency 40 of 310: libldap2:arm64=2.6.10+dfsg-1 Downloading dependency 41 of 310: libuuid1:arm64=2.41-5 Downloading dependency 42 of 310: tzdata:arm64=2025b-4 Downloading dependency 43 of 310: python3-tinycss2:arm64=1.4.0-2 Downloading dependency 44 of 310: fonts-mathjax:arm64=2.7.9+dfsg-1 Downloading dependency 45 of 310: python3-pandas-lib:arm64=2.2.3+dfsg-9 Downloading dependency 46 of 310: dh-strip-nondeterminism:arm64=1.14.1-2 Downloading dependency 47 of 310: libpam-modules-bin:arm64=1.7.0-5 Downloading dependency 48 of 310: binutils-aarch64-linux-gnu:arm64=2.45-3 Downloading dependency 49 of 310: liblz4-1:arm64=1.10.0-4 Downloading dependency 50 of 310: libtsan2:arm64=15.2.0-1 Downloading dependency 51 of 310: python3-zipp:arm64=3.21.0-1 Downloading dependency 52 of 310: sysvinit-utils:arm64=3.14-4 Downloading dependency 53 of 310: base-passwd:arm64=3.6.7 Downloading dependency 54 of 310: python3-chardet:arm64=5.2.0+dfsg-2 Downloading dependency 55 of 310: python3-html5lib:arm64=1.2-2 Downloading dependency 56 of 310: python3-all-dev:arm64=3.13.5-1 Downloading dependency 57 of 310: python3-idna:arm64=3.10-1 Downloading dependency 58 of 310: man-db:arm64=2.13.1-1 Downloading dependency 59 of 310: libjansson4:arm64=2.14-2+b3 Downloading dependency 60 of 310: python3-roman:arm64=5.0-1 Downloading dependency 61 of 310: libffi8:arm64=3.4.8-2 Downloading dependency 62 of 310: libtool:arm64=2.5.4-4 Downloading dependency 63 of 310: grep:arm64=3.11-4+b1 Downloading dependency 64 of 310: python3-inflect:arm64=7.3.1-2 Downloading dependency 65 of 310: libtasn1-6:arm64=4.20.0-2 Downloading dependency 66 of 310: python3-rpds-py:arm64=0.21.0-2+b1 Downloading dependency 67 of 310: python3-typeguard:arm64=4.4.2-1 Downloading dependency 68 of 310: init-system-helpers:arm64=1.68 Downloading dependency 69 of 310: libbsd0:arm64=0.12.2-2 Downloading dependency 70 of 310: util-linux:arm64=2.41-5 Downloading dependency 71 of 310: libssl3t64:arm64=3.5.2-1 Downloading dependency 72 of 310: python3-cpuinfo:arm64=9.0.0+git20221119-3 Downloading dependency 73 of 310: libsodium23:arm64=1.0.18-1+b2 Downloading dependency 74 of 310: python3-nbformat:arm64=5.9.1-1 Downloading dependency 75 of 310: python3-pytest:arm64=8.3.5-2 Downloading dependency 76 of 310: libncursesw6:arm64=6.5+20250216-2 Downloading dependency 77 of 310: libsmartcols1:arm64=2.41-5 Downloading dependency 78 of 310: debianutils:arm64=5.23.2 Downloading dependency 79 of 310: mawk:arm64=1.3.4.20250131-1 Downloading dependency 80 of 310: python3-more-itertools:arm64=10.7.0-1 Downloading dependency 81 of 310: cpp-14:arm64=14.2.0-19 Downloading dependency 82 of 310: python3-jupyterlab-pygments:arm64=0.2.2-3 Downloading dependency 83 of 310: libjs-jquery:arm64=3.6.1+dfsg+~3.5.14-1 Downloading dependency 84 of 310: libbrotli1:arm64=1.1.0-2+b7 Downloading dependency 85 of 310: python3-jaraco.text:arm64=4.0.0-1 Downloading dependency 86 of 310: gcc-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 87 of 310: libjs-underscore:arm64=1.13.4~dfsg+~1.11.4-3 Downloading dependency 88 of 310: libgdbm-compat4t64:arm64=1.24-2 Downloading dependency 89 of 310: libnettle8t64:arm64=3.10.1-1 Downloading dependency 90 of 310: po-debconf:arm64=1.0.21+nmu1 Downloading dependency 91 of 310: file:arm64=1:5.46-5 Downloading dependency 92 of 310: python3-decorator:arm64=5.2.1-2 Downloading dependency 93 of 310: hostname:arm64=3.25 Downloading dependency 94 of 310: libxml2:arm64=2.12.7+dfsg+really2.9.14-2.1 Downloading dependency 95 of 310: libunistring5:arm64=1.3-2 Downloading dependency 96 of 310: build-essential:arm64=12.12 Downloading dependency 97 of 310: liblastlog2-2:arm64=2.41-5 Downloading dependency 98 of 310: coreutils:arm64=9.7-3 Downloading dependency 99 of 310: libdb5.3t64:arm64=5.3.28+dfsg2-9 Downloading dependency 100 of 310: libsz2:arm64=1.1.3-1+b1 Downloading dependency 101 of 310: python3-nbclient:arm64=0.8.0-2 Downloading dependency 102 of 310: libudev1:arm64=257.7-1 Downloading dependency 103 of 310: python3-pandas:arm64=2.2.3+dfsg-9 Downloading dependency 104 of 310: xml-core:arm64=0.19 Downloading dependency 105 of 310: openssl-provider-legacy:arm64=3.5.2-1 Downloading dependency 106 of 310: libmpc3:arm64=1.3.1-1+b3 Downloading dependency 107 of 310: libssh2-1t64:arm64=1.11.1-1 Downloading dependency 108 of 310: python3-cftime:arm64=1.6.4-2 Downloading dependency 109 of 310: libperl5.40:arm64=5.40.1-6 Downloading dependency 110 of 310: libelf1t64:arm64=0.192-4 Downloading dependency 111 of 310: libacl1:arm64=2.3.2-2+b1 Downloading dependency 112 of 310: libkrb5support0:arm64=1.21.3-5 Downloading dependency 113 of 310: python3-nbsphinx-link:arm64=1.3.0-4 Downloading dependency 114 of 310: gettext:arm64=0.23.1-2 Downloading dependency 115 of 310: dash:arm64=0.5.12-12 Downloading dependency 116 of 310: gcc-15-base:arm64=15.2.0-1 Downloading dependency 117 of 310: libzstd1:arm64=1.5.7+dfsg-1 Downloading dependency 118 of 310: gzip:arm64=1.13-1 Downloading dependency 119 of 310: autoconf:arm64=2.72-3.1 Downloading dependency 120 of 310: libitm1:arm64=15.2.0-1 Downloading dependency 121 of 310: python3-pkg-resources:arm64=78.1.1-0.1 Downloading dependency 122 of 310: gcc:arm64=4:14.2.0-1 Downloading dependency 123 of 310: libpam0g:arm64=1.7.0-5 Downloading dependency 124 of 310: python3-fastjsonschema:arm64=2.21.1-1 Downloading dependency 125 of 310: libgnutls30t64:arm64=3.8.10-2 Downloading dependency 126 of 310: libpcre2-8-0:arm64=10.45-1 Downloading dependency 127 of 310: python-tinycss2-common:arm64=1.4.0-2 Downloading dependency 128 of 310: libnetcdf22:arm64=1:4.9.3-1 Downloading dependency 129 of 310: python3.13-dev:arm64=3.13.6-1 Downloading dependency 130 of 310: libcap-ng0:arm64=0.8.5-4+b1Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libcap-ng0 arm64 0.8.5-4+b1 [17.0 kB] Fetched 17.0 kB in 0s (1082 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyz9ffixa/libcap-ng0_0.8.5-4+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libpython3.13-stdlib arm64 3.13.6-1 [1897 kB] Fetched 1897 kB in 0s (61.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb78r5vuq/libpython3.13-stdlib_3.13.6-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 liblapack3 arm64 3.12.1-6 [1820 kB] Fetched 1820 kB in 0s (60.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo_75fv7o/liblapack3_3.12.1-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 binutils-gold arm64 2.44-2 [202 kB] Fetched 202 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnj6e5p4k/binutils-gold_2.44-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Fetched 128 kB in 0s (7919 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5q3p7fs_/docutils-common_0.21.2+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Fetched 121 kB in 0s (7407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcc5hdyvv/libngtcp2-16_1.11.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-tables all 3.10.2-2 [353 kB] Fetched 353 kB in 0s (19.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp12g5r5ni/python3-tables_3.10.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Fetched 57.1 kB in 0s (3585 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplzfczcqu/libpsl5t64_0.21.2-1.1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libpython3.13-dev arm64 3.13.6-1 [4886 kB] Fetched 4886 kB in 0s (89.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfmzur53s/libpython3.13-dev_3.13.6-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 python3.13-minimal arm64 3.13.6-1 [2005 kB] Fetched 2005 kB in 0s (64.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptzlefzf_/python3.13-minimal_3.13.6-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-sphinx all 8.1.3-5 [468 kB] Fetched 468 kB in 0s (24.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxj9205g/python3-sphinx_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Fetched 3019 kB in 0s (75.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1zs83k61/perl-modules-5.40_5.40.1-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libseccomp2 arm64 2.6.0-2 [51.0 kB] Fetched 51.0 kB in 0s (3236 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptzi0a6y9/libseccomp2_2.6.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libasan8 arm64 15.2.0-1 [2601 kB] Fetched 2601 kB in 0s (71.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwjemuzgs/libasan8_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Fetched 93.8 kB in 0s (5791 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_02vqci/bsdextrautils_2.41-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libbinutils arm64 2.45-3 [669 kB] Fetched 669 kB in 0s (32.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1gr0xch7/libbinutils_2.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (79.8 kB/s) dpkg-name: info: moved 'g++-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpl139jhp2/g++-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-dev arm64 3.13.5-1 [26.1 kB] Fetched 26.1 kB in 0s (1718 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfnhmvl8j/python3-dev_3.13.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libblosc1 arm64 1.21.5+ds-1+b2 [39.2 kB] Fetched 39.2 kB in 0s (2656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp074yn74x/libblosc1_1.21.5+ds-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 ca-certificates all 20250419 [162 kB] Fetched 162 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9aod1zou/ca-certificates_20250419_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Fetched 66.1 kB in 0s (4185 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk7oelntc/libhdf5-hl-310_1.14.5+repack-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Fetched 55.6 kB in 0s (3527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1z4526jm/libsasl2-2_2.1.28+dfsg1-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Fetched 146 kB in 0s (8917 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuyt_f7ab/python3-pyparsing_3.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-babel all 2.17.0-1 [117 kB] Fetched 117 kB in 0s (7407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyuafjft7/python3-babel_2.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-referencing all 0.36.2-1 [23.7 kB] Fetched 23.7 kB in 0s (1522 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjwqm_5fo/python3-referencing_0.36.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 sed arm64 4.9-2+b1 [326 kB] Fetched 326 kB in 0s (17.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp8otobhy/sed_4.9-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libcrypt-dev arm64 1:4.4.38-1 [123 kB] Fetched 123 kB in 0s (7562 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpo2miultl/libcrypt-dev_4.4.38-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 bzip2 arm64 1.0.8-6 [39.5 kB] Fetched 39.5 kB in 0s (2559 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6wt3qoj5/bzip2_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-urllib3 all 2.3.0-3 [115 kB] Fetched 115 kB in 0s (7169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbjb73_5n/python3-urllib3_2.3.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 xz-utils arm64 5.8.1-1 [657 kB] Fetched 657 kB in 0s (31.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9z1x30u4/xz-utils_5.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Fetched 127 kB in 0s (7642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3wbsnp7f/libgssapi-krb5-2_1.21.3-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-zmq arm64 26.4.0-1 [163 kB] Fetched 163 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqp6ukmgh/python3-zmq_26.4.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 tar arm64 1.35+dfsg-3.1 [802 kB] Fetched 802 kB in 0s (36.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm2hahuee/tar_1.35+dfsg-3.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Fetched 9020 B in 0s (591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpayef4g9d/python3-jsonschema-specifications_2023.12.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libcurl4t64 arm64 8.15.0-1 [360 kB] Fetched 360 kB in 0s (19.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0njw1nx/libcurl4t64_8.15.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 m4 arm64 1.4.19-8 [285 kB] Fetched 285 kB in 0s (15.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnq_rg7ph/m4_1.4.19-8_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libpython3.13 arm64 3.13.6-1 [1980 kB] Fetched 1980 kB in 0s (63.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7wp1ug3/libpython3.13_3.13.6-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB] Fetched 37.8 kB in 0s (2454 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoivxkxft/libbz2-1.0_1.0.8-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Fetched 6396 B in 0s (419 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6rn7m8kr/python3-iniconfig_1.1.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Fetched 63.2 kB in 0s (3983 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4t4knkbc/libnghttp3-9_1.8.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (316 kB/s) dpkg-name: info: moved 'cpp-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpri9et75o/cpp-aarch64-linux-gnu_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Fetched 2255 kB in 0s (67.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp16ged2vg/cython3_3.0.11+dfsg-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1+b2 [205 kB] Fetched 205 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf0mtkt2h/libnorm1t64_1.5.9+dfsg-3.1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Fetched 27.2 kB in 0s (1749 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe2p63uh3/python3-minimal_3.13.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-networkx all 3.2.1-5 [13.0 MB] Fetched 13.0 MB in 0s (131 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4igte82_/python3-networkx_3.2.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libctf-nobfd0 arm64 2.45-3 [153 kB] Fetched 153 kB in 0s (9355 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg2a0v2hh/libctf-nobfd0_2.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libubsan1 arm64 15.2.0-1 [1064 kB] Fetched 1064 kB in 0s (43.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuqnuqfc_/libubsan1_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libtinfo6 arm64 6.5+20250216-2 [341 kB] Fetched 341 kB in 0s (19.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoq7uu3k_/libtinfo6_6.5+20250216-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libc-bin arm64 2.41-12 [551 kB] Fetched 551 kB in 0s (28.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpinqkt0hh/libc-bin_2.41-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libgprofng0 arm64 2.45-3 [668 kB] Fetched 668 kB in 0s (32.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfchiw9ih/libgprofng0_2.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 bash arm64 5.2.37-2+b5 [1457 kB] Fetched 1457 kB in 0s (82.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiknato4f/bash_5.2.37-2+b5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libstdc++6 arm64 15.2.0-1 [647 kB] Fetched 647 kB in 0s (32.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnj9fbal5/libstdc++6_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Fetched 56.8 kB in 0s (3650 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp44w1u0ee/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (882 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmfzkgsiy/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 g++ arm64 4:14.2.0-1 [1332 B] Fetched 1332 B in 0s (86.7 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpo2usi4d1/g++_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB] Fetched 85.1 kB in 0s (5321 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpthx36no5/zlib1g_1.3.dfsg+really1.3.1-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Fetched 49.6 kB in 0s (3162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9xdlw02k/liblzo2-2_2.10-3+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 perl-base arm64 5.40.1-6 [1527 kB] Fetched 1527 kB in 0s (56.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6zv5ifs5/perl-base_5.40.1-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libzmq5 arm64 4.3.5-1+b3 [253 kB] Fetched 253 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp3n4x2p6/libzmq5_4.3.5-1+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1+b1 [152 kB] Fetched 152 kB in 0s (9303 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprx2_o6si/libpgm-5.3-0t64_5.3.128~dfsg-2.1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 patch arm64 2.8-2 [128 kB] Fetched 128 kB in 0s (7965 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp02a_s09n/patch_2.8-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-19 [10.1 MB] Fetched 10.1 MB in 0s (114 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7j7hkw8/g++-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libhogweed6t64 arm64 3.10.1-1 [332 kB] Fetched 332 kB in 0s (18.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbbp3c03_/libhogweed6t64_3.10.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Fetched 836 kB in 0s (37.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpecroosba/python3-pygments_2.18.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libaudit-common all 1:4.0.5-1 [13.5 kB] Fetched 13.5 kB in 0s (860 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.5-1_all.deb' to '/srv/rebuilderd/tmp/tmp4utfd6yk/libaudit-common_4.0.5-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-attr all 25.3.0-1 [69.5 kB] Fetched 69.5 kB in 0s (4441 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9wwnp1db/python3-attr_25.3.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Fetched 30.5 kB in 0s (1910 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw16vignu/libjs-sphinxdoc_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (1855 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgaz4fw4/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-psutil arm64 7.0.0-2 [220 kB] Fetched 220 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzvh9n2vw/python3-psutil_7.0.0-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 binutils-common arm64 2.45-3 [2558 kB] Fetched 2558 kB in 0s (70.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppnpa0ymj/binutils-common_2.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-nbsphinx all 0.9.5+ds-1 [39.9 kB] Fetched 39.9 kB in 0s (2547 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg034yr3r/python3-nbsphinx_0.9.5+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-nbconvert all 7.16.6-1 [160 kB] Fetched 160 kB in 0s (9591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7vlu9c80/python3-nbconvert_7.16.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libblas3 arm64 3.12.1-6 [104 kB] Fetched 104 kB in 0s (6517 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31hpmu5d/libblas3_3.12.1-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libgdbm6t64 arm64 1.24-2 [74.0 kB] Fetched 74.0 kB in 0s (4673 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpey4f3dn1/libgdbm6t64_1.24-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsqlite3-0 arm64 3.46.1-7 [854 kB] Fetched 854 kB in 0s (38.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpql3bno0u/libsqlite3-0_3.46.1-7_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-tables-lib arm64 3.10.2-2+b1 [427 kB] Fetched 427 kB in 0s (23.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqcefrzmj/python3-tables-lib_3.10.2-2+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsystemd0 arm64 257.7-1 [421 kB] Fetched 421 kB in 0s (22.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxijy01gu/libsystemd0_257.7-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (7319 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp337surkk/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Fetched 10.2 kB in 0s (688 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprwcmr9r0/libpython3-stdlib_3.13.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jupyter-client all 8.6.3-2 [92.4 kB] Fetched 92.4 kB in 0s (5946 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnok1hnn7/python3-jupyter-client_8.6.3-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Fetched 1130 kB in 0s (46.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprauy8qu8/groff-base_1.23.0-9_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-scipy arm64 1.15.3-1 [14.9 MB] Fetched 14.9 MB in 0s (138 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa1wg6gep/python3-scipy_1.15.3-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Fetched 107 kB in 0s (6776 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpplhcbiw2/libidn2-0_2.3.8-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python-tables-data all 3.10.2-2 [47.3 kB] Fetched 47.3 kB in 0s (3032 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpos5sj97n/python-tables-data_3.10.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libmpfr6 arm64 4.2.2-1 [685 kB] Fetched 685 kB in 0s (33.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp1zxbot3/libmpfr6_4.2.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 cpp arm64 4:14.2.0-1 [1568 B] Fetched 1568 B in 0s (105 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpvll9dkrq/cpp_14.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libpython3.13-minimal arm64 3.13.6-1 [857 kB] Fetched 857 kB in 0s (38.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5pn8zwj9/libpython3.13-minimal_3.13.6-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Fetched 14.1 kB in 0s (918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwlmoxusy/python3-markupsafe_2.1.5-1+b4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Fetched 79.4 kB in 0s (4995 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi228lgme/python3-dateutil_2.9.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Fetched 71.4 kB in 0s (4548 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsx2o8egk/libnghttp2-14_1.64.0-1.1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libisl23 arm64 0.27-1 [601 kB] Fetched 601 kB in 0s (55.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe9ec7keb/libisl23_0.27-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (790 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2p9l3qk/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 python3.13 arm64 3.13.6-1 [761 kB] Fetched 761 kB in 0s (35.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp119gyv6j/python3.13_3.13.6-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libctf0 arm64 2.45-3 [85.0 kB] Fetched 85.0 kB in 0s (5403 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjb_szs1q/libctf0_2.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-all arm64 3.13.5-1 [1044 B] Fetched 1044 B in 0s (69.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5m0kw1uk/python3-all_3.13.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 diffutils arm64 1:3.10-4 [378 kB] Fetched 378 kB in 0s (20.7 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_arm64.deb' to '/srv/rebuilderd/tmp/tmpizgacf44/diffutils_3.10-4_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 findutils arm64 4.10.0-3 [696 kB] Fetched 696 kB in 0s (34.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ipsvoiv/findutils_4.10.0-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19 [17.7 MB] Fetched 17.7 MB in 0s (150 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8hnki4ho/gcc-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Fetched 403 kB in 0s (21.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphbwa9xv7/python3-docutils_0.21.2+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Fetched 70.9 kB in 0s (4512 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiqvgt8bj/python3-traitlets_5.14.3+really5.14.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libcc1-0 arm64 15.2.0-1 [41.4 kB] Fetched 41.4 kB in 0s (2642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7f_4xjhb/libcc1-0_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libstdc++-14-dev arm64 14.2.0-19 [2295 kB] Fetched 2295 kB in 0s (67.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnr3d18o7/libstdc++-14-dev_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Fetched 103 kB in 0s (6353 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp3hllyidd/libmagic1t64_5.46-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Fetched 40.2 kB in 0s (2596 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmply_i4rxe/libpipeline1_1.5.8-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libdebconfclient0 arm64 0.280 [10.8 kB] Fetched 10.8 kB in 0s (675 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxlbev0f2/libdebconfclient0_0.280_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-cffi-backend arm64 1.17.1-3 [93.0 kB] Fetched 93.0 kB in 0s (5214 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphgk46dzo/python3-cffi-backend_1.17.1-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 gcc-14 arm64 14.2.0-19 [529 kB] Fetched 529 kB in 0s (27.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4ge36lc/gcc-14_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (18.8 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp31krcr7r/libmagic-mgc_5.46-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Fetched 24.9 kB in 0s (1567 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp27_3okus/libcom-err2_1.47.2-3+b3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 dpkg arm64 1.22.21 [1521 kB] Fetched 1521 kB in 0s (55.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjokmyxk6/dpkg_1.22.21_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 openssl arm64 3.5.2-1 [1457 kB] Fetched 1457 kB in 0s (53.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7yhq3aqu/openssl_3.5.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libmount1 arm64 2.41-5 [199 kB] Fetched 199 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkfi1nmva/libmount1_2.41-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Fetched 28.2 kB in 0s (1873 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1agnzu8/python3_3.13.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libselinux1 arm64 3.8.1-1 [79.4 kB] Fetched 79.4 kB in 0s (5173 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpirb3sbbj/libselinux1_3.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Fetched 43.4 kB in 0s (2833 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpta2gcte1/python3-defusedxml_0.7.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libgfortran5 arm64 15.2.0-1 [370 kB] Fetched 370 kB in 0s (20.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_7ymzcm/libgfortran5_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Fetched 81.2 kB in 0s (4977 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7hf0n2qh/libk5crypto3_1.21.3-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Fetched 5667 kB in 0s (95.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr5b7vuqo/libjs-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 bsdutils arm64 1:2.41-5 [109 kB] Fetched 109 kB in 0s (6647 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.41-5_arm64.deb' to '/srv/rebuilderd/tmp/tmp6v75_e5c/bsdutils_2.41-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libgmp10 arm64 2:6.3.0+dfsg-3 [535 kB] Fetched 535 kB in 0s (26.5 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_arm64.deb' to '/srv/rebuilderd/tmp/tmph68nw1q0/libgmp10_6.3.0+dfsg-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 binutils-gold-aarch64-linux-gnu arm64 2.44-2 [1700 kB] Fetched 1700 kB in 0s (59.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfsc704b4/binutils-gold-aarch64-linux-gnu_2.44-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libdebhelper-perl all 13.25 [91.6 kB] Fetched 91.6 kB in 0s (5793 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp46q4ngkt/libdebhelper-perl_13.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libsnappy1v5 arm64 1.2.2-1 [28.3 kB] Fetched 28.3 kB in 0s (1857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5vjyddke/libsnappy1v5_1.2.2-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (14.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpifox3tq6/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Fetched 56.6 kB in 0s (3600 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbbv8mfv/python3-packaging_25.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python-babel-localedata all 2.17.0-1 [6050 kB] Fetched 6050 kB in 0s (94.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfsmefwfq/python-babel-localedata_2.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libmd0 arm64 1.1.0-2+b1 [33.7 kB] Fetched 33.7 kB in 0s (2154 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ajdxl06/libmd0_1.1.0-2+b1_arm64.deb' Downloading dependency 131 of 310: libpython3.13-stdlib:arm64=3.13.6-1 Downloading dependency 132 of 310: liblapack3:arm64=3.12.1-6 Downloading dependency 133 of 310: binutils-gold:arm64=2.44-2 Downloading dependency 134 of 310: docutils-common:arm64=0.21.2+dfsg-2 Downloading dependency 135 of 310: libngtcp2-16:arm64=1.11.0-1 Downloading dependency 136 of 310: python3-tables:arm64=3.10.2-2 Downloading dependency 137 of 310: libpsl5t64:arm64=0.21.2-1.1+b1 Downloading dependency 138 of 310: libpython3.13-dev:arm64=3.13.6-1 Downloading dependency 139 of 310: python3.13-minimal:arm64=3.13.6-1 Downloading dependency 140 of 310: python3-sphinx:arm64=8.1.3-5 Downloading dependency 141 of 310: perl-modules-5.40:arm64=5.40.1-6 Downloading dependency 142 of 310: libseccomp2:arm64=2.6.0-2 Downloading dependency 143 of 310: libasan8:arm64=15.2.0-1 Downloading dependency 144 of 310: bsdextrautils:arm64=2.41-5 Downloading dependency 145 of 310: libbinutils:arm64=2.45-3 Downloading dependency 146 of 310: g++-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 147 of 310: python3-dev:arm64=3.13.5-1 Downloading dependency 148 of 310: libblosc1:arm64=1.21.5+ds-1+b2 Downloading dependency 149 of 310: ca-certificates:arm64=20250419 Downloading dependency 150 of 310: libhdf5-hl-310:arm64=1.14.5+repack-3 Downloading dependency 151 of 310: libsasl2-2:arm64=2.1.28+dfsg1-9 Downloading dependency 152 of 310: python3-pyparsing:arm64=3.1.2-1 Downloading dependency 153 of 310: python3-babel:arm64=2.17.0-1 Downloading dependency 154 of 310: python3-referencing:arm64=0.36.2-1 Downloading dependency 155 of 310: sed:arm64=4.9-2+b1 Downloading dependency 156 of 310: libcrypt-dev:arm64=1:4.4.38-1 Downloading dependency 157 of 310: bzip2:arm64=1.0.8-6 Downloading dependency 158 of 310: python3-urllib3:arm64=2.3.0-3 Downloading dependency 159 of 310: xz-utils:arm64=5.8.1-1 Downloading dependency 160 of 310: libgssapi-krb5-2:arm64=1.21.3-5 Downloading dependency 161 of 310: python3-zmq:arm64=26.4.0-1 Downloading dependency 162 of 310: tar:arm64=1.35+dfsg-3.1 Downloading dependency 163 of 310: python3-jsonschema-specifications:arm64=2023.12.1-2 Downloading dependency 164 of 310: libcurl4t64:arm64=8.15.0-1 Downloading dependency 165 of 310: m4:arm64=1.4.19-8 Downloading dependency 166 of 310: libpython3.13:arm64=3.13.6-1 Downloading dependency 167 of 310: libbz2-1.0:arm64=1.0.8-6 Downloading dependency 168 of 310: python3-iniconfig:arm64=1.1.1-2 Downloading dependency 169 of 310: libnghttp3-9:arm64=1.8.0-1 Downloading dependency 170 of 310: cpp-aarch64-linux-gnu:arm64=4:14.2.0-1 Downloading dependency 171 of 310: cython3:arm64=3.0.11+dfsg-2+b1 Downloading dependency 172 of 310: libnorm1t64:arm64=1.5.9+dfsg-3.1+b2 Downloading dependency 173 of 310: python3-minimal:arm64=3.13.5-1 Downloading dependency 174 of 310: python3-networkx:arm64=3.2.1-5 Downloading dependency 175 of 310: libctf-nobfd0:arm64=2.45-3 Downloading dependency 176 of 310: libubsan1:arm64=15.2.0-1 Downloading dependency 177 of 310: libtinfo6:arm64=6.5+20250216-2 Downloading dependency 178 of 310: libc-bin:arm64=2.41-12 Downloading dependency 179 of 310: libgprofng0:arm64=2.45-3 Downloading dependency 180 of 310: bash:arm64=5.2.37-2+b5 Downloading dependency 181 of 310: libstdc++6:arm64=15.2.0-1 Downloading dependency 182 of 310: librtmp1:arm64=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 183 of 310: python3-autocommand:arm64=2.2.2-3 Downloading dependency 184 of 310: g++:arm64=4:14.2.0-1 Downloading dependency 185 of 310: zlib1g:arm64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 186 of 310: liblzo2-2:arm64=2.10-3+b1 Downloading dependency 187 of 310: perl-base:arm64=5.40.1-6 Downloading dependency 188 of 310: libzmq5:arm64=4.3.5-1+b3 Downloading dependency 189 of 310: libpgm-5.3-0t64:arm64=5.3.128~dfsg-2.1+b1 Downloading dependency 190 of 310: patch:arm64=2.8-2 Downloading dependency 191 of 310: g++-14-aarch64-linux-gnu:arm64=14.2.0-19 Downloading dependency 192 of 310: libhogweed6t64:arm64=3.10.1-1 Downloading dependency 193 of 310: python3-pygments:arm64=2.18.0+dfsg-2 Downloading dependency 194 of 310: libaudit-common:arm64=1:4.0.5-1 Downloading dependency 195 of 310: python3-attr:arm64=25.3.0-1 Downloading dependency 196 of 310: libjs-sphinxdoc:arm64=8.1.3-5 Downloading dependency 197 of 310: media-types:arm64=13.0.0 Downloading dependency 198 of 310: python3-psutil:arm64=7.0.0-2 Downloading dependency 199 of 310: binutils-common:arm64=2.45-3 Downloading dependency 200 of 310: python3-nbsphinx:arm64=0.9.5+ds-1 Downloading dependency 201 of 310: python3-nbconvert:arm64=7.16.6-1 Downloading dependency 202 of 310: libblas3:arm64=3.12.1-6 Downloading dependency 203 of 310: libgdbm6t64:arm64=1.24-2 Downloading dependency 204 of 310: libsqlite3-0:arm64=3.46.1-7 Downloading dependency 205 of 310: python3-tables-lib:arm64=3.10.2-2+b1 Downloading dependency 206 of 310: libsystemd0:arm64=257.7-1 Downloading dependency 207 of 310: debconf:arm64=1.5.91 Downloading dependency 208 of 310: libpython3-stdlib:arm64=3.13.5-1 Downloading dependency 209 of 310: python3-jupyter-client:arm64=8.6.3-2 Downloading dependency 210 of 310: groff-base:arm64=1.23.0-9 Downloading dependency 211 of 310: python3-scipy:arm64=1.15.3-1 Downloading dependency 212 of 310: libidn2-0:arm64=2.3.8-2 Downloading dependency 213 of 310: python-tables-data:arm64=3.10.2-2 Downloading dependency 214 of 310: libmpfr6:arm64=4.2.2-1 Downloading dependency 215 of 310: cpp:arm64=4:14.2.0-1 Downloading dependency 216 of 310: libpython3.13-minimal:arm64=3.13.6-1 Downloading dependency 217 of 310: python3-markupsafe:arm64=2.1.5-1+b4 Downloading dependency 218 of 310: python3-dateutil:arm64=2.9.0-4 Downloading dependency 219 of 310: libnghttp2-14:arm64=1.64.0-1.1 Downloading dependency 220 of 310: libisl23:arm64=0.27-1 Downloading dependency 221 of 310: python3-jaraco.functools:arm64=4.1.0-1 Downloading dependency 222 of 310: python3.13:arm64=3.13.6-1 Downloading dependency 223 of 310: libctf0:arm64=2.45-3 Downloading dependency 224 of 310: python3-all:arm64=3.13.5-1 Downloading dependency 225 of 310: diffutils:arm64=1:3.10-4 Downloading dependency 226 of 310: findutils:arm64=4.10.0-3 Downloading dependency 227 of 310: gcc-14-aarch64-linux-gnu:arm64=14.2.0-19 Downloading dependency 228 of 310: python3-docutils:arm64=0.21.2+dfsg-2 Downloading dependency 229 of 310: python3-traitlets:arm64=5.14.3+really5.14.3-1 Downloading dependency 230 of 310: libcc1-0:arm64=15.2.0-1 Downloading dependency 231 of 310: libstdc++-14-dev:arm64=14.2.0-19 Downloading dependency 232 of 310: libmagic1t64:arm64=1:5.46-5 Downloading dependency 233 of 310: libpipeline1:arm64=1.5.8-1 Downloading dependency 234 of 310: libdebconfclient0:arm64=0.280 Downloading dependency 235 of 310: python3-cffi-backend:arm64=1.17.1-3 Downloading dependency 236 of 310: gcc-14:arm64=14.2.0-19 Downloading dependency 237 of 310: libmagic-mgc:arm64=1:5.46-5 Downloading dependency 238 of 310: libcom-err2:arm64=1.47.2-3+b3 Downloading dependency 239 of 310: dpkg:arm64=1.22.21 Downloading dependency 240 of 310: openssl:arm64=3.5.2-1 Downloading dependency 241 of 310: libmount1:arm64=2.41-5 Downloading dependency 242 of 310: python3:arm64=3.13.5-1 Downloading dependency 243 of 310: libselinux1:arm64=3.8.1-1 Downloading dependency 244 of 310: python3-defusedxml:arm64=0.7.1-3 Downloading dependency 245 of 310: libgfortran5:arm64=15.2.0-1 Downloading dependency 246 of 310: libk5crypto3:arm64=1.21.3-5 Downloading dependency 247 of 310: libjs-mathjax:arm64=2.7.9+dfsg-1 Downloading dependency 248 of 310: bsdutils:arm64=1:2.41-5 Downloading dependency 249 of 310: libgmp10:arm64=2:6.3.0+dfsg-3 Downloading dependency 250 of 310: binutils-gold-aarch64-linux-gnu:arm64=2.44-2 Downloading dependency 251 of 310: libdebhelper-perl:arm64=13.25 Downloading dependency 252 of 310: libsnappy1v5:arm64=1.2.2-1 Downloading dependency 253 of 310: libpam-runtime:arm64=1.7.0-5 Downloading dependency 254 of 310: python3-packaging:arm64=25.0-1 Downloading dependency 255 of 310: python-babel-localedata:arm64=2.17.0-1 Downloading dependency 256 of 310: libmd0:arm64=1.1.0-2+b1 Downloading dependency 257 of 310: cpp-14-aarch64-linux-gnu:arm64=14.2.0-19Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19 [9169 kB] Fetched 9169 kB in 0s (112 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5gu9kail/cpp-14-aarch64-linux-gnu_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Fetched 22.5 kB in 0s (1476 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp19o7jvzr/libaec0_1.1.3-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Fetched 69.2 kB in 0s (4370 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpix0oxrj0/libuchardet0_0.0.8-1+b2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 917 kB in 0s (40.0 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmprcvw_itx/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libattr1 arm64 1:2.5.2-3 [22.7 kB] Fetched 22.7 kB in 0s (1476 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_arm64.deb' to '/srv/rebuilderd/tmp/tmpwylakhao/libattr1_2.5.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-versioneer all 0.29-1 [43.0 kB] Fetched 43.0 kB in 0s (2752 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprscrk49h/python3-versioneer_0.29-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libblosc2-4 arm64 2.17.1+ds-1 [166 kB] Fetched 166 kB in 0s (467 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp39lcc4jv/libblosc2-4_2.17.1+ds-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-netcdf4 arm64 1.7.2-1+b5 [542 kB] Fetched 542 kB in 0s (27.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb8lwyanj/python3-netcdf4_1.7.2-1+b5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-webencodings all 0.5.1-5 [11.1 kB] Fetched 11.1 kB in 0s (712 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5570qrqy/python3-webencodings_0.5.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-numexpr arm64 2.11.0-1 [125 kB] Fetched 125 kB in 0s (1054 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_siaostc/python3-numexpr_2.11.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (3820 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu71uj38y/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-mistune all 3.1.3-1 [35.5 kB] Fetched 35.5 kB in 0s (2339 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9pm0hgsr/python3-mistune_3.1.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libxxhash0 arm64 0.8.3-2 [22.3 kB] Fetched 22.3 kB in 0s (1456 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwk1acga3/libxxhash0_0.8.3-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Fetched 241 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt3cge85m/gettext-base_0.23.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Fetched 6688 B in 0s (449 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwjcm592e/python3-imagesize_1.4.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libhwasan0 arm64 15.2.0-1 [1480 kB] Fetched 1480 kB in 0s (55.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3l56av9c/libhwasan0_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1 [136 kB] Fetched 136 kB in 0s (8280 kB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.2.4+ds-1_arm64.deb' to '/srv/rebuilderd/tmp/tmpcto4x8on/python3-numpy-dev_2.2.4+ds-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-tornado arm64 6.4.2-3 [350 kB] Fetched 350 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzouj_ysl/python3-tornado_6.4.2-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Fetched 27.9 kB in 0s (1842 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqqya758u/python3-alabaster_0.7.16-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 sgml-base all 1.31+nmu1 [10.9 kB] Fetched 10.9 kB in 0s (719 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7p9bsy88/sgml-base_1.31+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pandocfilters all 1.5.1-1 [23.7 kB] Fetched 23.7 kB in 0s (1560 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpap56nzh7/python3-pandocfilters_1.5.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 gcc-14-base arm64 14.2.0-19 [49.4 kB] Fetched 49.4 kB in 0s (3244 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4hgc3u7i/gcc-14-base_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 binutils arm64 2.45-3 [262 kB] Fetched 262 kB in 0s (15.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu7ysm1zq/binutils_2.45-3_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Fetched 87.5 kB in 0s (5584 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj9yyv70j/libjson-perl_4.10000-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-numpy arm64 1:2.2.4+ds-1 [3604 kB] Fetched 3604 kB in 0s (82.2 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.2.4+ds-1_arm64.deb' to '/srv/rebuilderd/tmp/tmplxoy8rnc/python3-numpy_2.2.4+ds-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-platformdirs all 4.3.7-1 [16.6 kB] Fetched 16.6 kB in 0s (1086 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxokh3ame/python3-platformdirs_4.3.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libgomp1 arm64 15.2.0-1 [126 kB] Fetched 126 kB in 0s (8028 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpscs1jbkb/libgomp1_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (31.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsjjily4/libdpkg-perl_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 make arm64 4.4.1-2 [452 kB] Fetched 452 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6muq56_d/make_4.4.1-2_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (1276 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxcmc1_1x/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (818 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpocykf634/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 liblzma5 arm64 5.8.1-1 [303 kB] Fetched 303 kB in 0s (17.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprh65d72p/liblzma5_5.8.1-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libaudit1 arm64 1:4.0.5-1 [58.9 kB] Fetched 58.9 kB in 0s (3811 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.5-1_arm64.deb' to '/srv/rebuilderd/tmp/tmp9y6b5jlq/libaudit1_4.0.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjw_3spsr/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libgcc-14-dev arm64 14.2.0-19 [2359 kB] Fetched 2359 kB in 0s (68.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu_qxgyz3/libgcc-14-dev_14.2.0-19_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 autopoint all 0.23.1-2 [770 kB] Fetched 770 kB in 0s (36.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbc4ljrj_/autopoint_0.23.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-soupsieve all 2.7-1 [39.0 kB] Fetched 39.0 kB in 0s (2452 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp60fy08__/python3-soupsieve_2.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libblkid1 arm64 2.41-5 [166 kB] Fetched 166 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_w6xrrli/libblkid1_2.41-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libc6-dev arm64 2.41-12 [1621 kB] Fetched 1621 kB in 0s (58.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo83y9ylo/libc6-dev_2.41-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 perl arm64 5.40.1-6 [267 kB] Fetched 267 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpware6o2p/perl_5.40.1-6_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (34.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3o4b2yha/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250827T144740Z forky/main arm64 libatomic1 arm64 15.2.0-1 [9960 B] Fetched 9960 B in 0s (668 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw2qlkopy/libatomic1_15.2.0-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libc-dev-bin arm64 2.41-12 [57.4 kB] Fetched 57.4 kB in 0s (3682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp492_ynhh/libc-dev-bin_2.41-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libpython3-dev arm64 3.13.5-1 [10.4 kB] Fetched 10.4 kB in 0s (691 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0vm796eu/libpython3-dev_3.13.5-1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pytest-rerunfailures all 15.1-1 [17.2 kB] Fetched 17.2 kB in 0s (1119 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvqk0z9ao/python3-pytest-rerunfailures_15.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Fetched 9652 B in 0s (608 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpab6okzsj/python3-certifi_2025.1.31+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-bs4 all 4.13.4-2 [167 kB] Fetched 167 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp25c2ewri/python3-bs4_4.13.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libc6 arm64 2.41-12 [2489 kB] Fetched 2489 kB in 0s (70.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90b3udn3/libc6_2.41-12_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Fetched 308 kB in 0s (17.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9yw32lh2/libkrb5-3_1.21.3-5_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-jupyter-core all 5.7.2-5 [35.3 kB] Fetched 35.3 kB in 0s (2291 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyd34om5w/python3-jupyter-core_5.7.2-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libcap2 arm64 1:2.75-10+b1 [28.2 kB] Fetched 28.2 kB in 0s (1854 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b1_arm64.deb' to '/srv/rebuilderd/tmp/tmpqurbtfmc/libcap2_2.75-10+b1_arm64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Fetched 26.9 kB in 0s (1770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdtx48a2e/python3-pluggy_1.5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (6622 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmavnjh2s/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250816T204950Z forky/main arm64 sensible-utils all 0.0.25 [25.0 kB] Fetched 25.0 kB in 0s (1634 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpocaeeual/sensible-utils_0.0.25_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmptv_x8u10/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture arm64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg 127.0.0.1 - - [03/Oct/2025 18:49:51] code 404, message File not found 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:38211 ./ InRelease 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:38211 ./ Release [462 B] 127.0.0.1 - - [03/Oct/2025 18:49:51] code 404, message File not found 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:38211 ./ Release.gpg 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:38211 ./ Packages [387 kB] Fetched 388 kB in 0s (11.2 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./gcc-15-base_15.2.0-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libc6_2.41-12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libgcc-s1_15.2.0-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./mawk_1.3.4.20250131-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./base-files_14_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libtinfo6_6.5%2b20250216-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./debianutils_5.23.2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./bash_5.2.37-2%2bb5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libcap2_2.75-10%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libsystemd0_257.7-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./bsdutils_2.41-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libacl1_2.3.2-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libattr1_2.5.2-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libgmp10_6.3.0%2bdfsg-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libpcre2-8-0_10.45-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libselinux1_3.8.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libzstd1_1.5.7%2bdfsg-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libssl3t64_3.5.2-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./openssl-provider-legacy_3.5.2-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./coreutils_9.7-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./dash_0.5.12-12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./diffutils_3.10-4_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libbz2-1.0_1.0.8-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./liblzma5_5.8.1-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libmd0_1.1.0-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./tar_1.35%2bdfsg-3.1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./dpkg_1.22.21_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./findutils_4.10.0-3_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./grep_3.11-4%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./gzip_1.13-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./hostname_3.25_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./ncurses-bin_6.5%2b20250216-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libcrypt1_4.4.38-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./perl-base_5.40.1-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./sed_4.9-2%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libaudit-common_4.0.5-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libcap-ng0_0.8.5-4%2bb1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libaudit1_4.0.5-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libpam0g_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libpam-modules-bin_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libpam-modules_1.7.0-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libblkid1_2.41-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libsqlite3-0_3.46.1-7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./liblastlog2-2_2.41-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libmount1_2.41-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libsmartcols1_2.41-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libudev1_257.7-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libuuid1_2.41-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./util-linux_2.41-5_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libdebconfclient0_0.280_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./base-passwd_3.6.7_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./libc-bin_2.41-12_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:49:51] "GET /./sysvinit-utils_3.14-4_arm64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg 127.0.0.1 - - [03/Oct/2025 18:49:54] code 404, message File not found 127.0.0.1 - - [03/Oct/2025 18:49:54] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:38211 ./ InRelease 127.0.0.1 - - [03/Oct/2025 18:49:54] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:38211 ./ Release 127.0.0.1 - - [03/Oct/2025 18:49:54] code 404, message File not found 127.0.0.1 - - [03/Oct/2025 18:49:54] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:38211 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libexpat1_2.7.1-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libpython3.13-minimal_3.13.6-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./python3.13-minimal_3.13.6-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./python3-minimal_3.13.5-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./media-types_13.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./tzdata_2025b-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libffi8_3.4.8-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libncursesw6_6.5%2b20250216-2_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./readline-common_8.2-6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libreadline8t64_8.2-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libpython3.13-stdlib_3.13.6-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./python3.13_3.13.6-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libpython3-stdlib_3.13.5-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./python3_3.13.5-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./python3-numpy-dev_2.2.4%2bds-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libblas3_3.12.1-6_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./libgfortran5_15.2.0-1_arm64.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:02] "GET /./liblapack3_3.12.1-6_arm64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [03/Oct/2025 18:50:03] "GET /./python3-pytest-rerunfailures_15.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [03/Oct/2025 18:50:03] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmptv_x8u10/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg Reading package lists... Building dependency tree... Reading state information... libgcc-s1 is already the newest version (15.2.0-1). automake is already the newest version (1:1.17-4). automake set to manually installed. debhelper is already the newest version (13.25). debhelper set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-9). libsasl2-modules-db set to manually installed. libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. linux-libc-dev is already the newest version (6.12.38-1). linux-libc-dev set to manually installed. base-files is already the newest version (14). dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. g++-14 is already the newest version (14.2.0-19). g++-14 set to manually installed. python3-requests is already the newest version (2.32.3+dfsg-5). python3-requests set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. libcurl3t64-gnutls is already the newest version (8.15.0-1). libcurl3t64-gnutls set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.11.0-1). libngtcp2-crypto-gnutls8 set to manually installed. python3-pytz is already the newest version (2025.2-3). python3-pytz set to manually installed. python3-snowballstemmer is already the newest version (3.0.1-1). python3-snowballstemmer set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). python3-charset-normalizer is already the newest version (3.4.2-1). python3-charset-normalizer set to manually installed. libhdf5-310 is already the newest version (1.14.5+repack-3). libhdf5-310 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. liblsan0 is already the newest version (15.2.0-1). liblsan0 set to manually installed. libpam-modules is already the newest version (1.7.0-5). python3-gsd is already the newest version (4.0.0-1). python3-gsd set to manually installed. libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. libexpat1 is already the newest version (2.7.1-2). libexpat1 set to manually installed. libsframe2 is already the newest version (2.45-3). libsframe2 set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. dh-python is already the newest version (6.20250414). dh-python set to manually installed. python3-bleach is already the newest version (6.2.0-1). python3-bleach set to manually installed. python3-jsonschema is already the newest version (4.19.2-6). python3-jsonschema set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libexpat1-dev is already the newest version (2.7.1-2). libexpat1-dev set to manually installed. sphinx-common is already the newest version (8.1.3-5). sphinx-common set to manually installed. python3-jinja2 is already the newest version (3.1.6-1). python3-jinja2 set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b1). rpcsvc-proto set to manually installed. python3-typing-extensions is already the newest version (4.14.1-1). python3-typing-extensions set to manually installed. libpython3-all-dev is already the newest version (3.13.5-1). libpython3-all-dev set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. libuuid1 is already the newest version (2.41-5). tzdata is already the newest version (2025b-4). tzdata set to manually installed. python3-tinycss2 is already the newest version (1.4.0-2). python3-tinycss2 set to manually installed. fonts-mathjax is already the newest version (2.7.9+dfsg-1). fonts-mathjax set to manually installed. python3-pandas-lib is already the newest version (2.2.3+dfsg-9). python3-pandas-lib set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). binutils-aarch64-linux-gnu is already the newest version (2.45-3). binutils-aarch64-linux-gnu set to manually installed. liblz4-1 is already the newest version (1.10.0-4). liblz4-1 set to manually installed. libtsan2 is already the newest version (15.2.0-1). libtsan2 set to manually installed. python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. sysvinit-utils is already the newest version (3.14-4). base-passwd is already the newest version (3.6.7). python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. python3-html5lib is already the newest version (1.2-2). python3-html5lib set to manually installed. python3-all-dev is already the newest version (3.13.5-1). python3-all-dev set to manually installed. python3-idna is already the newest version (3.10-1). python3-idna set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. python3-roman is already the newest version (5.0-1). python3-roman set to manually installed. libffi8 is already the newest version (3.4.8-2). libffi8 set to manually installed. libtool is already the newest version (2.5.4-4). libtool set to manually installed. grep is already the newest version (3.11-4+b1). python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. python3-rpds-py is already the newest version (0.21.0-2+b1). python3-rpds-py set to manually installed. python3-typeguard is already the newest version (4.4.2-1). python3-typeguard set to manually installed. init-system-helpers is already the newest version (1.68). libbsd0 is already the newest version (0.12.2-2). libbsd0 set to manually installed. util-linux is already the newest version (2.41-5). libssl3t64 is already the newest version (3.5.2-1). python3-cpuinfo is already the newest version (9.0.0+git20221119-3). python3-cpuinfo set to manually installed. libsodium23 is already the newest version (1.0.18-1+b2). libsodium23 set to manually installed. python3-nbformat is already the newest version (5.9.1-1). python3-nbformat set to manually installed. python3-pytest is already the newest version (8.3.5-2). python3-pytest set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. libsmartcols1 is already the newest version (2.41-5). debianutils is already the newest version (5.23.2). mawk is already the newest version (1.3.4.20250131-1). python3-more-itertools is already the newest version (10.7.0-1). python3-more-itertools set to manually installed. cpp-14 is already the newest version (14.2.0-19). cpp-14 set to manually installed. python3-jupyterlab-pygments is already the newest version (0.2.2-3). python3-jupyterlab-pygments set to manually installed. libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1). libjs-jquery set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. gcc-aarch64-linux-gnu is already the newest version (4:14.2.0-1). gcc-aarch64-linux-gnu set to manually installed. libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3). libjs-underscore set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. libnettle8t64 is already the newest version (3.10.1-1). libnettle8t64 set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. hostname is already the newest version (3.25). libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-2.1). libxml2 set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. liblastlog2-2 is already the newest version (2.41-5). coreutils is already the newest version (9.7-3). libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libsz2 is already the newest version (1.1.3-1+b1). libsz2 set to manually installed. python3-nbclient is already the newest version (0.8.0-2). python3-nbclient set to manually installed. libudev1 is already the newest version (257.7-1). python3-pandas is already the newest version (2.2.3+dfsg-9). python3-pandas set to manually installed. xml-core is already the newest version (0.19). xml-core set to manually installed. openssl-provider-legacy is already the newest version (3.5.2-1). libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. python3-cftime is already the newest version (1.6.4-2). python3-cftime set to manually installed. libperl5.40 is already the newest version (5.40.1-6). libperl5.40 set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. python3-nbsphinx-link is already the newest version (1.3.0-4). python3-nbsphinx-link set to manually installed. gettext is already the newest version (0.23.1-2). gettext set to manually installed. dash is already the newest version (0.5.12-12). gcc-15-base is already the newest version (15.2.0-1). libzstd1 is already the newest version (1.5.7+dfsg-1). gzip is already the newest version (1.13-1). autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libitm1 is already the newest version (15.2.0-1). libitm1 set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. libpam0g is already the newest version (1.7.0-5). python3-fastjsonschema is already the newest version (2.21.1-1). python3-fastjsonschema set to manually installed. libgnutls30t64 is already the newest version (3.8.10-2). libgnutls30t64 set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). python-tinycss2-common is already the newest version (1.4.0-2). python-tinycss2-common set to manually installed. libnetcdf22 is already the newest version (1:4.9.3-1). libnetcdf22 set to manually installed. python3.13-dev is already the newest version (3.13.6-1). python3.13-dev set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). libpython3.13-stdlib is already the newest version (3.13.6-1). libpython3.13-stdlib set to manually installed. liblapack3 is already the newest version (3.12.1-6). liblapack3 set to manually installed. binutils-gold is already the newest version (2.44-2). binutils-gold set to manually installed. docutils-common is already the newest version (0.21.2+dfsg-2). docutils-common set to manually installed. libngtcp2-16 is already the newest version (1.11.0-1). libngtcp2-16 set to manually installed. python3-tables is already the newest version (3.10.2-2). python3-tables set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libpython3.13-dev is already the newest version (3.13.6-1). libpython3.13-dev set to manually installed. python3.13-minimal is already the newest version (3.13.6-1). python3.13-minimal set to manually installed. python3-sphinx is already the newest version (8.1.3-5). python3-sphinx set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-6). perl-modules-5.40 set to manually installed. libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. libasan8 is already the newest version (15.2.0-1). libasan8 set to manually installed. bsdextrautils is already the newest version (2.41-5). bsdextrautils set to manually installed. libbinutils is already the newest version (2.45-3). libbinutils set to manually installed. g++-aarch64-linux-gnu is already the newest version (4:14.2.0-1). g++-aarch64-linux-gnu set to manually installed. python3-dev is already the newest version (3.13.5-1). python3-dev set to manually installed. libblosc1 is already the newest version (1.21.5+ds-1+b2). libblosc1 set to manually installed. ca-certificates is already the newest version (20250419). ca-certificates set to manually installed. libhdf5-hl-310 is already the newest version (1.14.5+repack-3). libhdf5-hl-310 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-9). libsasl2-2 set to manually installed. python3-pyparsing is already the newest version (3.1.2-1). python3-pyparsing set to manually installed. python3-babel is already the newest version (2.17.0-1). python3-babel set to manually installed. python3-referencing is already the newest version (0.36.2-1). python3-referencing set to manually installed. sed is already the newest version (4.9-2+b1). libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. python3-urllib3 is already the newest version (2.3.0-3). python3-urllib3 set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. python3-zmq is already the newest version (26.4.0-1). python3-zmq set to manually installed. tar is already the newest version (1.35+dfsg-3.1). python3-jsonschema-specifications is already the newest version (2023.12.1-2). python3-jsonschema-specifications set to manually installed. libcurl4t64 is already the newest version (8.15.0-1). libcurl4t64 set to manually installed. m4 is already the newest version (1.4.19-8). m4 set to manually installed. libpython3.13 is already the newest version (3.13.6-1). libpython3.13 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). python3-iniconfig is already the newest version (1.1.1-2). python3-iniconfig set to manually installed. libnghttp3-9 is already the newest version (1.8.0-1). libnghttp3-9 set to manually installed. cpp-aarch64-linux-gnu is already the newest version (4:14.2.0-1). cpp-aarch64-linux-gnu set to manually installed. cython3 is already the newest version (3.0.11+dfsg-2+b1). cython3 set to manually installed. libnorm1t64 is already the newest version (1.5.9+dfsg-3.1+b2). libnorm1t64 set to manually installed. python3-minimal is already the newest version (3.13.5-1). python3-minimal set to manually installed. python3-networkx is already the newest version (3.2.1-5). python3-networkx set to manually installed. libctf-nobfd0 is already the newest version (2.45-3). libctf-nobfd0 set to manually installed. libubsan1 is already the newest version (15.2.0-1). libubsan1 set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). libc-bin is already the newest version (2.41-12). libgprofng0 is already the newest version (2.45-3). libgprofng0 set to manually installed. bash is already the newest version (5.2.37-2+b5). libstdc++6 is already the newest version (15.2.0-1). libstdc++6 set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). liblzo2-2 is already the newest version (2.10-3+b1). liblzo2-2 set to manually installed. perl-base is already the newest version (5.40.1-6). libzmq5 is already the newest version (4.3.5-1+b3). libzmq5 set to manually installed. libpgm-5.3-0t64 is already the newest version (5.3.128~dfsg-2.1+b1). libpgm-5.3-0t64 set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. g++-14-aarch64-linux-gnu is already the newest version (14.2.0-19). g++-14-aarch64-linux-gnu set to manually installed. libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. python3-pygments is already the newest version (2.18.0+dfsg-2). python3-pygments set to manually installed. libaudit-common is already the newest version (1:4.0.5-1). python3-attr is already the newest version (25.3.0-1). python3-attr set to manually installed. libjs-sphinxdoc is already the newest version (8.1.3-5). libjs-sphinxdoc set to manually installed. media-types is already the newest version (13.0.0). media-types set to manually installed. python3-psutil is already the newest version (7.0.0-2). python3-psutil set to manually installed. binutils-common is already the newest version (2.45-3). binutils-common set to manually installed. python3-nbsphinx is already the newest version (0.9.5+ds-1). python3-nbsphinx set to manually installed. python3-nbconvert is already the newest version (7.16.6-1). python3-nbconvert set to manually installed. libblas3 is already the newest version (3.12.1-6). libblas3 set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-7). python3-tables-lib is already the newest version (3.10.2-2+b1). python3-tables-lib set to manually installed. libsystemd0 is already the newest version (257.7-1). debconf is already the newest version (1.5.91). libpython3-stdlib is already the newest version (3.13.5-1). libpython3-stdlib set to manually installed. python3-jupyter-client is already the newest version (8.6.3-2). python3-jupyter-client set to manually installed. groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. python3-scipy is already the newest version (1.15.3-1). python3-scipy set to manually installed. libidn2-0 is already the newest version (2.3.8-2). libidn2-0 set to manually installed. python-tables-data is already the newest version (3.10.2-2). python-tables-data set to manually installed. libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libpython3.13-minimal is already the newest version (3.13.6-1). libpython3.13-minimal set to manually installed. python3-markupsafe is already the newest version (2.1.5-1+b4). python3-markupsafe set to manually installed. python3-dateutil is already the newest version (2.9.0-4). python3-dateutil set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1.1). libnghttp2-14 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. python3.13 is already the newest version (3.13.6-1). python3.13 set to manually installed. libctf0 is already the newest version (2.45-3). libctf0 set to manually installed. python3-all is already the newest version (3.13.5-1). python3-all set to manually installed. diffutils is already the newest version (1:3.10-4). findutils is already the newest version (4.10.0-3). gcc-14-aarch64-linux-gnu is already the newest version (14.2.0-19). gcc-14-aarch64-linux-gnu set to manually installed. python3-docutils is already the newest version (0.21.2+dfsg-2). python3-docutils set to manually installed. python3-traitlets is already the newest version (5.14.3+really5.14.3-1). python3-traitlets set to manually installed. libcc1-0 is already the newest version (15.2.0-1). libcc1-0 set to manually installed. libstdc++-14-dev is already the newest version (14.2.0-19). libstdc++-14-dev set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libdebconfclient0 is already the newest version (0.280). python3-cffi-backend is already the newest version (1.17.1-3). python3-cffi-backend set to manually installed. gcc-14 is already the newest version (14.2.0-19). gcc-14 set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. libcom-err2 is already the newest version (1.47.2-3+b3). libcom-err2 set to manually installed. dpkg is already the newest version (1.22.21). openssl is already the newest version (3.5.2-1). openssl set to manually installed. libmount1 is already the newest version (2.41-5). python3 is already the newest version (3.13.5-1). python3 set to manually installed. libselinux1 is already the newest version (3.8.1-1). python3-defusedxml is already the newest version (0.7.1-3). python3-defusedxml set to manually installed. libgfortran5 is already the newest version (15.2.0-1). libgfortran5 set to manually installed. libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. libjs-mathjax is already the newest version (2.7.9+dfsg-1). libjs-mathjax set to manually installed. bsdutils is already the newest version (1:2.41-5). libgmp10 is already the newest version (2:6.3.0+dfsg-3). binutils-gold-aarch64-linux-gnu is already the newest version (2.44-2). binutils-gold-aarch64-linux-gnu set to manually installed. libdebhelper-perl is already the newest version (13.25). libdebhelper-perl set to manually installed. libsnappy1v5 is already the newest version (1.2.2-1). libsnappy1v5 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). python3-packaging is already the newest version (25.0-1). python3-packaging set to manually installed. python-babel-localedata is already the newest version (2.17.0-1). python-babel-localedata set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). cpp-14-aarch64-linux-gnu is already the newest version (14.2.0-19). cpp-14-aarch64-linux-gnu set to manually installed. libaec0 is already the newest version (1.1.3-1+b1). libaec0 set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. libattr1 is already the newest version (1:2.5.2-3). python3-versioneer is already the newest version (0.29-1). python3-versioneer set to manually installed. libblosc2-4 is already the newest version (2.17.1+ds-1). libblosc2-4 set to manually installed. python3-netcdf4 is already the newest version (1.7.2-1+b5). python3-netcdf4 set to manually installed. python3-webencodings is already the newest version (0.5.1-5). python3-webencodings set to manually installed. python3-numexpr is already the newest version (2.11.0-1). python3-numexpr set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. python3-mistune is already the newest version (3.1.3-1). python3-mistune set to manually installed. libxxhash0 is already the newest version (0.8.3-2). libxxhash0 set to manually installed. gettext-base is already the newest version (0.23.1-2). gettext-base set to manually installed. python3-imagesize is already the newest version (1.4.1-1). python3-imagesize set to manually installed. libhwasan0 is already the newest version (15.2.0-1). libhwasan0 set to manually installed. python3-numpy-dev is already the newest version (1:2.2.4+ds-1). python3-numpy-dev set to manually installed. python3-tornado is already the newest version (6.4.2-3). python3-tornado set to manually installed. python3-alabaster is already the newest version (0.7.16-0.1). python3-alabaster set to manually installed. sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. python3-pandocfilters is already the newest version (1.5.1-1). python3-pandocfilters set to manually installed. gcc-14-base is already the newest version (14.2.0-19). gcc-14-base set to manually installed. binutils is already the newest version (2.45-3). binutils set to manually installed. libjson-perl is already the newest version (4.10000-1). libjson-perl set to manually installed. python3-numpy is already the newest version (1:2.2.4+ds-1). python3-numpy set to manually installed. python3-platformdirs is already the newest version (4.3.7-1). python3-platformdirs set to manually installed. libgomp1 is already the newest version (15.2.0-1). libgomp1 set to manually installed. libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. make is already the newest version (4.4.1-2). make set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. liblzma5 is already the newest version (5.8.1-1). libaudit1 is already the newest version (1:4.0.5-1). ncurses-base is already the newest version (6.5+20250216-2). libgcc-14-dev is already the newest version (14.2.0-19). libgcc-14-dev set to manually installed. autopoint is already the newest version (0.23.1-2). autopoint set to manually installed. python3-soupsieve is already the newest version (2.7-1). python3-soupsieve set to manually installed. libblkid1 is already the newest version (2.41-5). libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. perl is already the newest version (5.40.1-6). perl set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. libatomic1 is already the newest version (15.2.0-1). libatomic1 set to manually installed. libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. libpython3-dev is already the newest version (3.13.5-1). libpython3-dev set to manually installed. python3-pytest-rerunfailures is already the newest version (15.1-1). python3-pytest-rerunfailures set to manually installed. python3-certifi is already the newest version (2025.1.31+ds-1). python3-certifi set to manually installed. python3-bs4 is already the newest version (4.13.4-2). python3-bs4 set to manually installed. libc6 is already the newest version (2.41-12). libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. python3-jupyter-core is already the newest version (5.7.2-5). python3-jupyter-core set to manually installed. libcap2 is already the newest version (1:2.75-10+b1). python3-pluggy is already the newest version (1.5.0-1). python3-pluggy set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. sensible-utils is already the newest version (0.0.25). sensible-utils set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg (Reading database ... 34453 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.jiYsmVUXtg... I: success in 88.4853 seconds Downloading dependency 258 of 310: libaec0:arm64=1.1.3-1+b1 Downloading dependency 259 of 310: libuchardet0:arm64=0.0.8-1+b2 Downloading dependency 260 of 310: zlib1g-dev:arm64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 261 of 310: libattr1:arm64=1:2.5.2-3 Downloading dependency 262 of 310: python3-versioneer:arm64=0.29-1 Downloading dependency 263 of 310: libblosc2-4:arm64=2.17.1+ds-1 Downloading dependency 264 of 310: python3-netcdf4:arm64=1.7.2-1+b5 Downloading dependency 265 of 310: python3-webencodings:arm64=0.5.1-5 Downloading dependency 266 of 310: python3-numexpr:arm64=2.11.0-1 Downloading dependency 267 of 310: autotools-dev:arm64=20240727.1 Downloading dependency 268 of 310: python3-mistune:arm64=3.1.3-1 Downloading dependency 269 of 310: libxxhash0:arm64=0.8.3-2 Downloading dependency 270 of 310: gettext-base:arm64=0.23.1-2 Downloading dependency 271 of 310: python3-imagesize:arm64=1.4.1-1 Downloading dependency 272 of 310: libhwasan0:arm64=15.2.0-1 Downloading dependency 273 of 310: python3-numpy-dev:arm64=1:2.2.4+ds-1 Downloading dependency 274 of 310: python3-tornado:arm64=6.4.2-3 Downloading dependency 275 of 310: python3-alabaster:arm64=0.7.16-0.1 Downloading dependency 276 of 310: sgml-base:arm64=1.31+nmu1 Downloading dependency 277 of 310: python3-pandocfilters:arm64=1.5.1-1 Downloading dependency 278 of 310: gcc-14-base:arm64=14.2.0-19 Downloading dependency 279 of 310: binutils:arm64=2.45-3 Downloading dependency 280 of 310: libjson-perl:arm64=4.10000-1 Downloading dependency 281 of 310: python3-numpy:arm64=1:2.2.4+ds-1 Downloading dependency 282 of 310: python3-platformdirs:arm64=4.3.7-1 Downloading dependency 283 of 310: libgomp1:arm64=15.2.0-1 Downloading dependency 284 of 310: libdpkg-perl:arm64=1.22.21 Downloading dependency 285 of 310: make:arm64=4.4.1-2 Downloading dependency 286 of 310: libfile-stripnondeterminism-perl:arm64=1.14.1-2 Downloading dependency 287 of 310: netbase:arm64=6.5 Downloading dependency 288 of 310: liblzma5:arm64=5.8.1-1 Downloading dependency 289 of 310: libaudit1:arm64=1:4.0.5-1 Downloading dependency 290 of 310: ncurses-base:arm64=6.5+20250216-2 Downloading dependency 291 of 310: libgcc-14-dev:arm64=14.2.0-19 Downloading dependency 292 of 310: autopoint:arm64=0.23.1-2 Downloading dependency 293 of 310: python3-soupsieve:arm64=2.7-1 Downloading dependency 294 of 310: libblkid1:arm64=2.41-5 Downloading dependency 295 of 310: libc6-dev:arm64=2.41-12 Downloading dependency 296 of 310: perl:arm64=5.40.1-6 Downloading dependency 297 of 310: python3-setuptools:arm64=78.1.1-0.1 Downloading dependency 298 of 310: libatomic1:arm64=15.2.0-1 Downloading dependency 299 of 310: libc-dev-bin:arm64=2.41-12 Downloading dependency 300 of 310: libpython3-dev:arm64=3.13.5-1 Downloading dependency 301 of 310: python3-pytest-rerunfailures:arm64=15.1-1 Downloading dependency 302 of 310: python3-certifi:arm64=2025.1.31+ds-1 Downloading dependency 303 of 310: python3-bs4:arm64=4.13.4-2 Downloading dependency 304 of 310: libc6:arm64=2.41-12 Downloading dependency 305 of 310: libkrb5-3:arm64=1.21.3-5 Downloading dependency 306 of 310: python3-jupyter-core:arm64=5.7.2-5 Downloading dependency 307 of 310: libcap2:arm64=1:2.75-10+b1 Downloading dependency 308 of 310: python3-pluggy:arm64=1.5.0-1 Downloading dependency 309 of 310: libarchive-zip-perl:arm64=1.68-1 Downloading dependency 310 of 310: sensible-utils:arm64=0.0.25 env --chdir=/srv/rebuilderd/tmp/rebuilderdY8E5LS/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1754933451 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildLQw9Vi/debrebuild.sbuildrc.06lsTXZa5DVz sbuild --build=arm64 --host=arm64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildLQw9Vi/debrebuild.tar.Iv7PZ5rrlJsj --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mdtraj-1.11.0 /srv/rebuilderd/tmp/rebuilderdY8E5LS/inputs/mdtraj_1.11.0-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on codethink02-arm64 +==============================================================================+ | mdtraj 1.11.0-1 (arm64) Fri, 03 Oct 2025 17:51:20 +0000 | +==============================================================================+ Package: mdtraj Version: 1.11.0-1 Source Version: 1.11.0-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildLQw9Vi/debrebuild.tar.Iv7PZ5rrlJsj to /srv/rebuilderd/tmp/tmp.sbuild.kDWMreYEn2... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 03 Oct 2025 17:51:28 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdY8E5LS/inputs/mdtraj_1.11.0-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdY8E5LS/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 03 Oct 2025 17:51:30 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-nbsphinx-link, python3-netcdf4, python3-networkx, python3-packaging, python3-pandas, python3-pyparsing, python3-pytest, python3-pytest-rerunfailures, python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-nbsphinx-link, python3-netcdf4, python3-networkx, python3-packaging, python3-pandas, python3-pyparsing, python3-pytest, python3-pytest-rerunfailures, python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-Q9z383/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 03 Oct 2025 17:51:36 +0000 | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any-amd64 arm64 i386 all) +------------------------------------------------------------------------------+ | Build environment Fri, 03 Oct 2025 17:51:37 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) arm64 (aarch64) Toolchain package versions: binutils_2.45-3 dpkg-dev_1.22.21 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-12 libstdc++-14-dev_14.2.0-19 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.2.37-2+b5 binutils_2.45-3 binutils-aarch64-linux-gnu_2.45-3 binutils-common_2.45-3 binutils-gold_2.44-2 binutils-gold-aarch64-linux-gnu_2.44-2 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-aarch64-linux-gnu_14.2.0-19 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-2+b1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.25 debianutils_5.23.2 dh-autoreconf_20 dh-python_6.20250414 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 docutils-common_0.21.2+dfsg-2 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 file_1:5.46-5 findutils_4.10.0-3 fonts-mathjax_2.7.9+dfsg-1 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-aarch64-linux-gnu_14.2.0-19 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-aarch64-linux-gnu_14.2.0-19 gcc-14-base_14.2.0-19 gcc-15-base_15.2.0-1 gcc-aarch64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 grep_3.11-4+b1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libaec0_1.1.3-1+b1 libarchive-zip-perl_1.68-1 libasan8_15.2.0-1 libatomic1_15.2.0-1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.45-3 libblas3_3.12.1-6 libblkid1_2.41-5 libblosc1_1.21.5+ds-1+b2 libblosc2-4_2.17.1+ds-1 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-1 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-3 libctf0_2.45-3 libcurl3t64-gnutls_8.15.0-1 libcurl4t64_8.15.0-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.25 libdpkg-perl_1.22.21 libelf1t64_0.192-4 libexpat1_2.7.1-2 libexpat1-dev_2.7.1-2 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-s1_15.2.0-1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_15.2.0-1 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-1 libgprofng0_2.45-3 libgssapi-krb5-2_1.21.3-5 libhdf5-310_1.14.5+repack-3 libhdf5-hl-310_1.14.5+repack-3 libhogweed6t64_3.10.1-1 libhwasan0_15.2.0-1 libidn2-0_2.3.8-2 libisl23_0.27-1 libitm1_15.2.0-1 libjansson4_2.14-2+b3 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-mathjax_2.7.9+dfsg-1 libjs-sphinxdoc_8.1.3-5 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-perl_4.10000-1 libk5crypto3_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5support0_1.21.3-5 liblapack3_3.12.1-6 liblastlog2-2_2.41-5 libldap2_2.6.10+dfsg-1 liblsan0_15.2.0-1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 liblzo2-2_2.10-3+b1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnetcdf22_1:4.9.3-1 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1.1 libnghttp3-9_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libnorm1t64_1.5.9+dfsg-3.1+b2 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-6 libpgm-5.3-0t64_5.3.128~dfsg-2.1+b1 libpipeline1_1.5.8-1 libpsl5t64_0.21.2-1.1+b1 libpython3-all-dev_3.13.5-1 libpython3-dev_3.13.5-1 libpython3-stdlib_3.13.5-1 libpython3.13_3.13.6-1 libpython3.13-dev_3.13.6-1 libpython3.13-minimal_3.13.6-1 libpython3.13-stdlib_3.13.6-1 libreadline8t64_8.2-6 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsframe2_2.45-3 libsmartcols1_2.41-5 libsnappy1v5_1.2.2-1 libsodium23_1.0.18-1+b2 libsqlite3-0_3.46.1-7 libssh2-1t64_1.11.1-1 libssl3t64_3.5.2-1 libstdc++-14-dev_14.2.0-19 libstdc++6_15.2.0-1 libsystemd0_257.7-1 libsz2_1.1.3-1+b1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_15.2.0-1 libubsan1_15.2.0-1 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-2.1 libxxhash0_0.8.3-2 libzmq5_4.3.5-1+b3 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.38-1 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_13.0.0 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl_3.5.2-1 openssl-provider-legacy_3.5.2-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 po-debconf_1.0.21+nmu1 python-babel-localedata_2.17.0-1 python-tables-data_3.10.2-2 python-tinycss2-common_1.4.0-2 python3_3.13.5-1 python3-alabaster_0.7.16-0.1 python3-all_3.13.5-1 python3-all-dev_3.13.5-1 python3-attr_25.3.0-1 python3-autocommand_2.2.2-3 python3-babel_2.17.0-1 python3-bleach_6.2.0-1 python3-bs4_4.13.4-2 python3-certifi_2025.1.31+ds-1 python3-cffi-backend_1.17.1-3 python3-cftime_1.6.4-2 python3-chardet_5.2.0+dfsg-2 python3-charset-normalizer_3.4.2-1 python3-cpuinfo_9.0.0+git20221119-3 python3-dateutil_2.9.0-4 python3-decorator_5.2.1-2 python3-defusedxml_0.7.1-3 python3-dev_3.13.5-1 python3-docutils_0.21.2+dfsg-2 python3-fastjsonschema_2.21.1-1 python3-gsd_4.0.0-1 python3-html5lib_1.2-2 python3-idna_3.10-1 python3-imagesize_1.4.1-1 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-jaraco.context_6.0.1-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-jinja2_3.1.6-1 python3-jsonschema_4.19.2-6 python3-jsonschema-specifications_2023.12.1-2 python3-jupyter-client_8.6.3-2 python3-jupyter-core_5.7.2-5 python3-jupyterlab-pygments_0.2.2-3 python3-markupsafe_2.1.5-1+b4 python3-minimal_3.13.5-1 python3-mistune_3.1.3-1 python3-more-itertools_10.7.0-1 python3-nbclient_0.8.0-2 python3-nbconvert_7.16.6-1 python3-nbformat_5.9.1-1 python3-nbsphinx_0.9.5+ds-1 python3-nbsphinx-link_1.3.0-4 python3-netcdf4_1.7.2-1+b5 python3-networkx_3.2.1-5 python3-numexpr_2.11.0-1 python3-numpy_1:2.2.4+ds-1 python3-numpy-dev_1:2.2.4+ds-1 python3-packaging_25.0-1 python3-pandas_2.2.3+dfsg-9 python3-pandas-lib_2.2.3+dfsg-9 python3-pandocfilters_1.5.1-1 python3-pkg-resources_78.1.1-0.1 python3-platformdirs_4.3.7-1 python3-pluggy_1.5.0-1 python3-psutil_7.0.0-2 python3-pygments_2.18.0+dfsg-2 python3-pyparsing_3.1.2-1 python3-pytest_8.3.5-2 python3-pytest-rerunfailures_15.1-1 python3-pytz_2025.2-3 python3-referencing_0.36.2-1 python3-requests_2.32.3+dfsg-5 python3-roman_5.0-1 python3-rpds-py_0.21.0-2+b1 python3-scipy_1.15.3-1 python3-setuptools_78.1.1-0.1 python3-snowballstemmer_3.0.1-1 python3-soupsieve_2.7-1 python3-sphinx_8.1.3-5 python3-tables_3.10.2-2 python3-tables-lib_3.10.2-2+b1 python3-tinycss2_1.4.0-2 python3-tornado_6.4.2-3 python3-traitlets_5.14.3+really5.14.3-1 python3-typeguard_4.4.2-1 python3-typing-extensions_4.14.1-1 python3-urllib3_2.3.0-3 python3-versioneer_0.29-1 python3-webencodings_0.5.1-5 python3-zipp_3.21.0-1 python3-zmq_26.4.0-1 python3.13_3.13.6-1 python3.13-dev_3.13.6-1 python3.13-minimal_3.13.6-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1+b1 sed_4.9-2+b1 sensible-utils_0.0.25 sgml-base_1.31+nmu1 sphinx-common_8.1.3-5 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-4 util-linux_2.41-5 xml-core_0.19 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Fri, 03 Oct 2025 17:51:37 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mdtraj Binary: python3-mdtraj, python-mdtraj-doc Architecture: any-amd64 arm64 i386 all Version: 1.11.0-1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://mdtraj.org/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/mdtraj Vcs-Git: https://salsa.debian.org/debichem-team/mdtraj.git Testsuite: autopkgtest Testsuite-Triggers: python3-gsd, python3-ipykernel, python3-jupyter-client, python3-matplotlib, python3-nbformat, python3-netcdf4, python3-packaging, python3-pandas, python3-pytest, python3-pytest-rerunfailures, python3-sklearn Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-nbsphinx-link, python3-netcdf4, python3-networkx, python3-packaging , python3-pandas, python3-pyparsing, python3-pytest , python3-pytest-rerunfailures , python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax Build-Depends-Indep: pandoc, python3-msmb-theme, python3-ipykernel, python3-jupyter-client, python3-matplotlib, python3-nbconvert, python3-nbformat, python3-numpydoc, python3-sklearn Package-List: python-mdtraj-doc deb doc optional arch=all python3-mdtraj deb python optional arch=any-amd64,arm64,i386 Checksums-Sha1: 21e669632e858df798f129cfeb9a9a3d31ccb394 22723159 mdtraj_1.11.0.orig.tar.gz 02855388782c2563201868a1910b1feb3b82b6b5 298656 mdtraj_1.11.0-1.debian.tar.xz Checksums-Sha256: fefca787f882d0716a7aeb01b4d8e30caddbd2be0b2893acfa7201c31d13c786 22723159 mdtraj_1.11.0.orig.tar.gz adea16845a36ab69788ef02c54702a4fb881868452a22766fd4a0e67c93db9a3 298656 mdtraj_1.11.0-1.debian.tar.xz Files: 7ad9ab16d7cbca7b7aee5e88ff440586 22723159 mdtraj_1.11.0.orig.tar.gz 28bce5e968ca2d0bbbac38200c04aadf 298656 mdtraj_1.11.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmiaL5MACgkQVz7x5L1a AfquEBAAoZ7blxVeg575mUvjXD45ruOTzf1qUNYRbeH6dDssWajqrYt1iKVOwjfo y2Av40xqSkovFzQSThIcUl9pILttHuo+FWpiYhkWk4/iu/H98Pirt+soxOQAfu7Q HDV1ZbeP2lz3hJvb65JEPMr6kOKrk3v0AEYVFIo7bBYJ5Ccbz+ZM/cQNzVMREmcB HChE+d0Q1/Fd8twCs3yp9/qOrER43p1zA0eFoq3DrvItLaagxaqnsPnjSqX6op5j RcHLT9GPsmhhCdco+Jn1zEP20DtspWba6dcPECORjHhqRhSA4t9KZVfv1RtWur93 FfP1tZNjUvTvE02Z0GA+DNUJhLjd6gfEi2KuxabPwoye9xwZzSl8Gtj7xhmuxglb r7BfDFzDQTvRx4tExK+QscQTV3IkX273AzLtiN6mL1lwRbtxLrmFW9CPSiaJe4zo 4O905aHoPap8F7noll16KdaOlQamHU+vHsmUsSsedULtLYVEhHZSF36OqabsUeqx 4cazf95FCQzFtIzgfqQtpW/VQxtPfQY58KV8hqHVaTFBsR4t9LpdVCos29n4heBz JBtI7RUQGGBB16fYFMV+N8dv79zqoTm6+Kbp0aNSGTMWYlIcOKzNEXnI7ExOrfn/ 0N8cHQPP/VsW4aaNqDIAOw9DQqbAfZAcE1zwTn6Y9gwmzrEODPI= =gjaZ -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./mdtraj_1.11.0-1.dsc: unsupported subcommand dpkg-source: info: extracting mdtraj in /build/reproducible-path/mdtraj-1.11.0 dpkg-source: info: unpacking mdtraj_1.11.0.orig.tar.gz dpkg-source: info: unpacking mdtraj_1.11.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying docs_use_local_mathjax.patch dpkg-source: info: applying build_dir_pybuild.patch dpkg-source: info: applying python_hashbang.patch dpkg-source: info: applying 32bit_skip_image_molecule.patch dpkg-source: info: applying test_relax_tol.patch dpkg-source: info: applying rename-mdconvert-mdtraj.patch dpkg-source: info: applying drop_notebook_in_docs.patch dpkg-source: info: applying test_increase_timeout.patch dpkg-source: info: applying openmm_version_skip.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1754933451 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mdtraj dpkg-buildpackage: info: source version 1.11.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from mdtraj-1.11.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py clean Using built-in specs. COLLECT_GCC=/usr/bin/aarch64-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/14/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-19' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-19) /build/reproducible-path/mdtraj-1.11.0/basesetup.py:483: UserWarning: Unrecognized setuptools command ('clean'), proceeding with generating Cython sources and expanding templates warnings.warn( warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Did not detect SSE2 support Attempting to autodetect SSE3 support... Did not detect SSE3 support Attempting to autodetect SSE4.1 support... Did not detect SSE4.1 support Attempting to autodetect NEON support... Compiler supports NEON [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.0' for f in mdtraj/formats/binpos/binpos.c \ mdtraj/formats/dcd/dcd.c \ mdtraj/formats/dtr/dtr.cpp \ mdtraj/formats/tng/tng.c \ mdtraj/formats/xtc/trr.c \ mdtraj/formats/xtc/xtc.c \ mdtraj/geometry/drid.cpp \ mdtraj/geometry/neighborlist.cpp \ mdtraj/geometry/neighbors.cpp \ mdtraj/geometry/src/_geometry.cpp \ mdtraj/rmsd/_lprmsd.cpp \ mdtraj/rmsd/_rmsd.cpp \ mdtraj/version.py; \ do rm -f $f; done rm -rf mdtraj/core/lib rm -rf docs/api/generated rm -rf __pycache__ .pybuild find . -name "lib*.a" -delete make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.11.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-mdtraj.substvars debian/python-mdtraj-doc.substvars debian/files rm -fr -- debian/python3-mdtraj/ debian/tmp/ debian/python-mdtraj-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py config Using built-in specs. COLLECT_GCC=/usr/bin/aarch64-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/14/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-19' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-19) /build/reproducible-path/mdtraj-1.11.0/basesetup.py:483: UserWarning: Unrecognized setuptools command ('config'), proceeding with generating Cython sources and expanding templates warnings.warn( warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Did not detect SSE2 support Attempting to autodetect SSE3 support... Did not detect SSE3 support Attempting to autodetect SSE4.1 support... Did not detect SSE4.1 support Attempting to autodetect NEON support... Compiler supports NEON [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -a -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild base:311: /usr/bin/python3 setup.py build Using built-in specs. COLLECT_GCC=/usr/bin/aarch64-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/14/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-19' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-19) warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Did not detect SSE2 support Attempting to autodetect SSE3 support... Did not detect SSE3 support Attempting to autodetect SSE4.1 support... Did not detect SSE4.1 support Attempting to autodetect NEON support... Compiler supports NEON [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/io.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/pi_stacking.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/pdbx.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/PdbxReader.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/PdbxContainers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/pdbxfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data UPDATING /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py set /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py to '1.11.0' running build_ext building 'mdtraj.formats.xtc' extension creating build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_xtc.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/xtc.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/xtc.c:1263: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/xtc.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-aarch64-linux-gnu.so building 'mdtraj.formats.trr' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_trr.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/trr.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/trr.c:1265: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/trr.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-aarch64-linux-gnu.so building 'mdtraj.formats.dcd' extension creating build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd creating build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/src aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/dcd.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/dcd.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dcd/dcd.c:1260: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/src/dcdplugin.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/dcd.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-aarch64-linux-gnu.so building 'mdtraj.formats.dtr' extension creating build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr creating build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/src aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/dtr.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/dtr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dtr/dtr.cpp:1279: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/src/dtrplugin.cxx -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dtr/src/dtrplugin.cxx: In member function ‘bool desres::molfile::Timekeys::init(const std::string&)’: mdtraj/formats/dtr/src/dtrplugin.cxx:487:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %ld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:487:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %ld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:706:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 706 | sprintf(sub, "%03x/", i); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:706:22: note: directive argument in the range [0, 2147483646] 706 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from mdtraj/formats/dtr/include/molfile_plugin.h:35, from mdtraj/formats/dtr/include/dtrplugin.hxx:46, from mdtraj/formats/dtr/src/dtrplugin.cxx:42: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:706:9: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:714:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(subsub, "%03x", j); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:714:29: note: directive argument in the range [0, 2147483646] 714 | sprintf(subsub, "%03x", j); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:714:13: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:667:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 667 | sprintf(answer, "%03x/", d1); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:667:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:665:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function ‘std::string DDreldir(const std::string&, int, int)’, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: mdtraj/formats/dtr/src/dtrplugin.cxx:665:29: note: directive argument in the range [0, 2147483646] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:665:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/dtr.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-aarch64-linux-gnu.so building 'mdtraj._rmsd' extension creating build/temp.linux-aarch64-cpython-313/mdtraj/rmsd creating build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/_rmsd.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_rmsd.cpp:1298: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/_rmsd.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-aarch64-linux-gnu.so building 'mdtraj._lprmsd' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/_lprmsd.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_lprmsd.cpp:1305: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/Munkres.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/fancy_index.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/_lprmsd.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/Munkres.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/fancy_index.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-aarch64-linux-gnu.so building 'mdtraj.core.lib.libtheobald' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -O3 -funroll-loops --std=c++11 aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o -O3 -funroll-loops --std=c++11 aarch64-linux-gnu-gcc-ar rcs /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o building 'mdtraj.geometry._geometry' extension creating build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/_geometry.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/geometry/src/_geometry.cpp:1287: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/dssp.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/geometry.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/sasa.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/_geometry.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/dssp.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/geometry.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/sasa.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-aarch64-linux-gnu.so building 'mdtraj.geometry.drid' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/drid.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/drid.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/dridkernels.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/moments.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/geometry/drid.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/dridkernels.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/moments.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-aarch64-linux-gnu.so building 'mdtraj.geometry.neighbors' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/neighbors.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/neighbors.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/geometry/neighbors.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/neighbors.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-aarch64-linux-gnu.so building 'mdtraj.geometry.neighborlist' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/neighborlist.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/neighborlist.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/geometry/neighborlist.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/neighborlist.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-aarch64-linux-gnu.so dh_auto_test -a -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.13 I: pybuild base:311: cd /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build; python3.13 -m pytest -k 'not (mdconvert or pi_stacking.ipynb or nmr.ipynb or test_image_molecules) and not (test_3 or test_pdb_from_url or test_1vii_url_and_gz)' ============================= test session starts ============================== platform linux -- Python 3.13.6, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build configfile: pyproject.toml testpaths: tests, examples plugins: rerunfailures-15.1, typeguard-4.4.2 collecting ... collected 1161 items / 22 deselected / 1139 selected tests/test_alignment.py::test_rmsd_zero PASSED [ 0%] tests/test_alignment.py::test_rmsd_nonzero PASSED [ 0%] tests/test_alignment.py::test_transform PASSED [ 0%] tests/test_alignment.py::test_transform2 PASSED [ 0%] tests/test_angles.py::test_angle_pbc_0 PASSED [ 0%] tests/test_angles.py::test_generator PASSED [ 0%] tests/test_angles.py::test_angle_180[True] PASSED [ 0%] tests/test_angles.py::test_angle_180[False] PASSED [ 0%] tests/test_arc.py::test_read_0 PASSED [ 0%] tests/test_arc.py::test_read_arctraj PASSED [ 0%] tests/test_arc.py::test_read_arctraj_top PASSED [ 0%] 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[ 44%] tests/test_topology.py::test_topology_openmm_formal_charges SKIPPED [ 44%] tests/test_topology.py::test_topology_dataframe_formal_charges PASSED [ 44%] tests/test_topology.py::test_topology_pandas PASSED [ 44%] tests/test_topology.py::test_topology_pandas_TIP4PEW PASSED [ 44%] tests/test_topology.py::test_topology_pandas_2residues_same_resSeq PASSED [ 44%] tests/test_topology.py::test_topology_numbers PASSED [ 44%] tests/test_topology.py::test_topology_unique_elements_bpti PASSED [ 44%] tests/test_topology.py::test_chain PASSED [ 44%] tests/test_topology.py::test_residue PASSED [ 45%] tests/test_topology.py::test_segment_id PASSED [ 45%] tests/test_topology.py::test_nonconsective_resSeq PASSED [ 45%] tests/test_topology.py::test_pickle PASSED [ 45%] tests/test_topology.py::test_atoms_by_name PASSED [ 45%] tests/test_topology.py::test_select_atom_indices PASSED [ 45%] tests/test_topology.py::test_top_dataframe_openmm_roundtrip SKIPPED [ 45%] tests/test_topology.py::test_n_bonds PASSED [ 45%] tests/test_topology.py::test_load_unknown_topology PASSED [ 45%] tests/test_topology.py::test_unique_pairs PASSED [ 45%] tests/test_topology.py::test_select_pairs PASSED [ 45%] tests/test_topology.py::test_to_fasta PASSED [ 46%] tests/test_topology.py::test_subset PASSED [ 46%] tests/test_topology.py::test_subset_re_index_residues PASSED [ 46%] tests/test_topology.py::test_molecules PASSED [ 46%] tests/test_topology.py::test_copy_and_hash PASSED [ 46%] tests/test_topology.py::test_copy[traj.h5] PASSED [ 46%] tests/test_topology.py::test_copy[1ply_charge.pdb] PASSED [ 46%] tests/test_topology.py::test_topology_sliced_residue_indices PASSED [ 46%] tests/test_topology.py::test_topology_join PASSED [ 46%] tests/test_topology.py::test_topology_join_keep_resSeq PASSED [ 46%] tests/test_topology.py::test_topology_join_formal_charge PASSED [ 46%] tests/test_topology.py::test_delete_atom_by_index PASSED [ 46%] tests/test_trajectory.py::test_mismatch PASSED [ 47%] tests/test_trajectory.py::test_box PASSED [ 47%] tests/test_trajectory.py::test_load_pdb_box PASSED [ 47%] tests/test_trajectory.py::test_load_pdb_gz PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[nc] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[h5] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[xtc] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[trr] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[dcd] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[mdcrd] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[dtr] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[xyz] SKIPPED (xyz does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[xyz.gz] SKIPPED (xyz.gz...) [ 48%] tests/test_trajectory.py::test_box_load_save[lammpstrj] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[lh5] SKIPPED (lh5 does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[pdb] SKIPPED (pdb does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[pdb.gz] SKIPPED (pdb.gz...) [ 48%] tests/test_trajectory.py::test_box_load_save[ncrst] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[rst7] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[gro] PASSED [ 48%] tests/test_trajectory.py::test_slice PASSED [ 48%] tests/test_trajectory.py::test_slice2 PASSED [ 48%] tests/test_trajectory.py::test_read_path[nc] PASSED [ 48%] tests/test_trajectory.py::test_read_path[h5] PASSED [ 49%] tests/test_trajectory.py::test_read_path[xtc] PASSED [ 49%] tests/test_trajectory.py::test_read_path[trr] PASSED [ 49%] tests/test_trajectory.py::test_read_path[dcd] PASSED [ 49%] tests/test_trajectory.py::test_read_path[mdcrd] PASSED [ 49%] tests/test_trajectory.py::test_read_path[dtr] PASSED [ 49%] tests/test_trajectory.py::test_read_path[xyz] PASSED [ 49%] tests/test_trajectory.py::test_read_path[xyz.gz] PASSED [ 49%] tests/test_trajectory.py::test_read_path[lammpstrj] PASSED [ 49%] tests/test_trajectory.py::test_read_path[lh5] PASSED [ 49%] tests/test_trajectory.py::test_read_path[pdb] PASSED [ 49%] tests/test_trajectory.py::test_read_path[pdb.gz] PASSED [ 50%] tests/test_trajectory.py::test_read_path[ncrst] XFAIL (These referen...) [ 50%] tests/test_trajectory.py::test_read_path[rst7] XFAIL (These referenc...) [ 50%] tests/test_trajectory.py::test_read_path[gro] PASSED [ 50%] tests/test_trajectory.py::test_write_path[nc] PASSED [ 50%] tests/test_trajectory.py::test_write_path[h5] PASSED [ 50%] tests/test_trajectory.py::test_write_path[xtc] PASSED [ 50%] tests/test_trajectory.py::test_write_path[trr] PASSED [ 50%] tests/test_trajectory.py::test_write_path[dcd] PASSED [ 50%] tests/test_trajectory.py::test_write_path[mdcrd] SKIPPED (mdcrd can ...) [ 50%] tests/test_trajectory.py::test_write_path[dtr] PASSED [ 50%] tests/test_trajectory.py::test_write_path[xyz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[xyz.gz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[lammpstrj] PASSED [ 51%] tests/test_trajectory.py::test_write_path[lh5] PASSED [ 51%] tests/test_trajectory.py::test_write_path[pdb] PASSED [ 51%] tests/test_trajectory.py::test_write_path[pdb.gz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[ncrst] SKIPPED (ncrst can ...) [ 51%] tests/test_trajectory.py::test_write_path[rst7] SKIPPED (rst7 can on...) [ 51%] tests/test_trajectory.py::test_write_path[gro] PASSED [ 51%] tests/test_trajectory.py::test_read_write[nc-nc] PASSED [ 51%] tests/test_trajectory.py::test_read_write[nc-h5] PASSED [ 51%] tests/test_trajectory.py::test_read_write[nc-xtc] PASSED [ 51%] tests/test_trajectory.py::test_read_write[nc-trr] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-dcd] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-mdcrd] SKIPPED (mdcrd c...) [ 52%] tests/test_trajectory.py::test_read_write[nc-dtr] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-xyz] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-xyz.gz] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-lammpstrj] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-lh5] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-pdb] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-pdb.gz] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-ncrst] SKIPPED (ncrst c...) [ 52%] tests/test_trajectory.py::test_read_write[nc-rst7] SKIPPED (rst7 can...) [ 53%] tests/test_trajectory.py::test_read_write[nc-gro] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-nc] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-h5] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-xtc] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-trr] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-dcd] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-mdcrd] SKIPPED (mdcrd c...) [ 53%] tests/test_trajectory.py::test_read_write[h5-dtr] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-xyz] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-xyz.gz] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-lammpstrj] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-lh5] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-pdb] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-pdb.gz] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-ncrst] SKIPPED (ncrst c...) [ 54%] tests/test_trajectory.py::test_read_write[h5-rst7] SKIPPED (rst7 can...) [ 54%] tests/test_trajectory.py::test_read_write[h5-gro] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-nc] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-h5] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-xtc] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-trr] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-dcd] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-mdcrd] SKIPPED (mdcrd ...) [ 55%] tests/test_trajectory.py::test_read_write[xtc-dtr] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-xyz] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-xyz.gz] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-lammpstrj] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-lh5] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-pdb] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-pdb.gz] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-ncrst] SKIPPED (ncrst ...) [ 55%] tests/test_trajectory.py::test_read_write[xtc-rst7] SKIPPED (rst7 ca...) [ 55%] tests/test_trajectory.py::test_read_write[xtc-gro] PASSED [ 55%] tests/test_trajectory.py::test_read_write[trr-nc] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-h5] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-xtc] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-trr] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-dcd] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-mdcrd] SKIPPED (mdcrd ...) [ 56%] tests/test_trajectory.py::test_read_write[trr-dtr] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-xyz] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-xyz.gz] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-lammpstrj] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-lh5] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-pdb] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-pdb.gz] PASSED [ 57%] tests/test_trajectory.py::test_read_write[trr-ncrst] SKIPPED (ncrst ...) [ 57%] tests/test_trajectory.py::test_read_write[trr-rst7] SKIPPED (rst7 ca...) [ 57%] tests/test_trajectory.py::test_read_write[trr-gro] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-nc] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-h5] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-xtc] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-trr] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-dcd] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-mdcrd] SKIPPED (mdcrd ...) [ 57%] tests/test_trajectory.py::test_read_write[dcd-dtr] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-xyz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-xyz.gz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-lammpstrj] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-lh5] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-pdb] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-pdb.gz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-ncrst] SKIPPED (ncrst ...) [ 58%] tests/test_trajectory.py::test_read_write[dcd-rst7] SKIPPED (rst7 ca...) [ 58%] tests/test_trajectory.py::test_read_write[dcd-gro] PASSED [ 58%] tests/test_trajectory.py::test_read_write[mdcrd-nc] PASSED [ 58%] tests/test_trajectory.py::test_read_write[mdcrd-h5] PASSED [ 58%] tests/test_trajectory.py::test_read_write[mdcrd-xtc] PASSED [ 58%] tests/test_trajectory.py::test_read_write[mdcrd-trr] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-dcd] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-mdcrd] SKIPPED (mdcr...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-dtr] SKIPPED (dtr ne...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-xyz] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-xyz.gz] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-lammpstrj] SKIPPED (...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-lh5] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-pdb] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-pdb.gz] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-ncrst] SKIPPED (ncrs...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-rst7] SKIPPED (rst7 ...) [ 60%] tests/test_trajectory.py::test_read_write[mdcrd-gro] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-nc] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-h5] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-xtc] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-trr] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-dcd] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-mdcrd] SKIPPED (mdcrd ...) [ 60%] tests/test_trajectory.py::test_read_write[dtr-dtr] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-xyz] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-xyz.gz] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-lammpstrj] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-lh5] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-pdb] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-pdb.gz] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-ncrst] SKIPPED (ncrst ...) [ 61%] tests/test_trajectory.py::test_read_write[dtr-rst7] SKIPPED (rst7 ca...) [ 61%] tests/test_trajectory.py::test_read_write[dtr-gro] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-nc] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-h5] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-xtc] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-trr] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-dcd] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-mdcrd] SKIPPED (mdcrd ...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-dtr] SKIPPED (dtr need...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-xyz] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-xyz.gz] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-lammpstrj] SKIPPED (la...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-lh5] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-pdb] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-pdb.gz] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-ncrst] SKIPPED (ncrst ...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-rst7] SKIPPED (rst7 ca...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-gro] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz.gz-nc] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-h5] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-xtc] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-trr] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-dcd] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-mdcrd] SKIPPED (mdc...) [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-dtr] SKIPPED (dtr n...) [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-xyz] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-xyz.gz] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-lammpstrj] SKIPPED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-lh5] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-pdb] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-pdb.gz] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-ncrst] SKIPPED (ncr...) [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-rst7] SKIPPED (rst7...) [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-gro] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-nc] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-h5] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-xtc] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-trr] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-dcd] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-mdcrd] SKIPPED (...) [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-dtr] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-xyz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-xyz.gz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-lammpstrj] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-lh5] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-pdb] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-pdb.gz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-ncrst] SKIPPED (...) [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-rst7] SKIPPED (r...) [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-gro] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lh5-nc] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lh5-h5] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lh5-xtc] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-trr] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-dcd] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-mdcrd] SKIPPED (mdcrd ...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-dtr] SKIPPED (dtr need...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-xyz] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-xyz.gz] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-lammpstrj] SKIPPED (la...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-lh5] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-pdb] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-pdb.gz] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-ncrst] SKIPPED (ncrst ...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-rst7] SKIPPED (rst7 ca...) [ 67%] tests/test_trajectory.py::test_read_write[lh5-gro] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-nc] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-h5] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-xtc] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-trr] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-dcd] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-mdcrd] SKIPPED (mdcrd ...) [ 67%] tests/test_trajectory.py::test_read_write[pdb-dtr] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-xyz] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-xyz.gz] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-lammpstrj] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-lh5] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-pdb] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-pdb.gz] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-ncrst] SKIPPED (ncrst ...) [ 68%] tests/test_trajectory.py::test_read_write[pdb-rst7] SKIPPED (rst7 ca...) [ 68%] tests/test_trajectory.py::test_read_write[pdb-gro] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-nc] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-h5] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-xtc] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-trr] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-dcd] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-mdcrd] SKIPPED (mdc...) [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-dtr] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-xyz] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-xyz.gz] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-lammpstrj] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-lh5] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-pdb] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-pdb.gz] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-ncrst] SKIPPED (ncr...) [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-rst7] SKIPPED (rst7...) [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-gro] PASSED [ 69%] tests/test_trajectory.py::test_read_write[ncrst-nc] XFAIL (These ref...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-h5] XFAIL (These ref...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xtc] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-trr] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-dcd] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-mdcrd] XFAIL (These ...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-dtr] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xyz] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xyz.gz] XFAIL (These...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-lammpstrj] XFAIL (Th...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-lh5] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-pdb] XFAIL (These re...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-pdb.gz] XFAIL (These...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-ncrst] XFAIL (These ...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-rst7] XFAIL (These r...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-gro] XFAIL (These re...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-nc] XFAIL (These refe...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-h5] XFAIL (These refe...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-xtc] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-trr] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-dcd] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-mdcrd] XFAIL (These r...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-dtr] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-xyz] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-xyz.gz] XFAIL (These ...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-lammpstrj] XFAIL (The...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-lh5] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-pdb] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-pdb.gz] XFAIL (These ...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-ncrst] XFAIL (These r...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-rst7] XFAIL (These re...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-gro] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[gro-nc] PASSED [ 72%] tests/test_trajectory.py::test_read_write[gro-h5] PASSED [ 72%] tests/test_trajectory.py::test_read_write[gro-xtc] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-trr] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-dcd] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-mdcrd] SKIPPED (mdcrd ...) [ 73%] tests/test_trajectory.py::test_read_write[gro-dtr] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-xyz] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-xyz.gz] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-lammpstrj] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-lh5] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-pdb] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-pdb.gz] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-ncrst] SKIPPED (ncrst ...) [ 74%] tests/test_trajectory.py::test_read_write[gro-rst7] SKIPPED (rst7 ca...) [ 74%] tests/test_trajectory.py::test_read_write[gro-gro] PASSED [ 74%] tests/test_trajectory.py::test_load[nc] PASSED [ 74%] tests/test_trajectory.py::test_load[h5] PASSED [ 74%] tests/test_trajectory.py::test_load[xtc] PASSED [ 74%] tests/test_trajectory.py::test_load[trr] PASSED [ 74%] tests/test_trajectory.py::test_load[dcd] PASSED [ 74%] tests/test_trajectory.py::test_load[mdcrd] PASSED [ 74%] tests/test_trajectory.py::test_load[dtr] PASSED [ 74%] tests/test_trajectory.py::test_load[xyz] PASSED [ 74%] tests/test_trajectory.py::test_load[xyz.gz] PASSED [ 74%] tests/test_trajectory.py::test_load[lammpstrj] PASSED [ 75%] tests/test_trajectory.py::test_load[lh5] PASSED [ 75%] tests/test_trajectory.py::test_load[pdb] PASSED [ 75%] tests/test_trajectory.py::test_load[pdb.gz] PASSED [ 75%] tests/test_trajectory.py::test_load[ncrst] XFAIL (These reference fi...) [ 75%] tests/test_trajectory.py::test_load[rst7] XFAIL (These reference fil...) [ 75%] tests/test_trajectory.py::test_load[gro] PASSED [ 75%] tests/test_trajectory.py::test_hdf5 PASSED [ 75%] tests/test_trajectory.py::test_center PASSED [ 75%] tests/test_trajectory.py::test_center_aind PASSED [ 75%] tests/test_trajectory.py::test_float_atom_indices_exception[nc] PASSED [ 75%] tests/test_trajectory.py::test_float_atom_indices_exception[h5] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xtc] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[trr] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[dcd] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[mdcrd] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[dtr] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xyz] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xyz.gz] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[lammpstrj] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[lh5] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[pdb] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[pdb.gz] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[ncrst] XFAIL [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[rst7] XFAIL [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[gro] PASSED [ 77%] tests/test_trajectory.py::test_restrict_atoms PASSED [ 77%] tests/test_trajectory.py::test_restrict_atoms_not_inplace PASSED [ 77%] tests/test_trajectory.py::test_array_vs_matrix PASSED [ 77%] tests/test_trajectory.py::test_pdb_unitcell_loadsave PASSED [ 77%] tests/test_trajectory.py::test_load_combination[nc] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[h5] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[xtc] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[trr] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[dcd] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[mdcrd] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[dtr] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[xyz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[xyz.gz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[lammpstrj] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[lh5] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[pdb] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[pdb.gz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[ncrst] XFAIL (These ...) [ 78%] tests/test_trajectory.py::test_load_combination[rst7] XFAIL (These r...) [ 78%] tests/test_trajectory.py::test_load_combination[gro] PASSED [ 79%] tests/test_trajectory.py::test_no_topology PASSED [ 79%] tests/test_trajectory.py::test_join PASSED [ 79%] tests/test_trajectory.py::test_md_join PASSED [ 79%] tests/test_trajectory.py::test_stack_1 PASSED [ 79%] tests/test_trajectory.py::test_stack_2 PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[nc] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[h5] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[xtc] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[trr] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[dcd] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[mdcrd] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[dtr] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[xyz] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[xyz.gz] XFAIL (This is...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[lammpstrj] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[lh5] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[pdb] XFAIL (PDB Files ...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[pdb.gz] XFAIL (PDB Fil...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[ncrst] XFAIL (These re...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[rst7] XFAIL (These ref...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[gro] XFAIL (This is br...) [ 80%] tests/test_trajectory.py::test_load_frame[nc] PASSED [ 80%] tests/test_trajectory.py::test_load_frame[h5] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[xtc] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[trr] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[dcd] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[mdcrd] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[dtr] XFAIL (DTR doesn't lo...) [ 81%] tests/test_trajectory.py::test_load_frame[xyz] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[xyz.gz] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[lammpstrj] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[lh5] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[pdb] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[pdb.gz] PASSED [ 82%] tests/test_trajectory.py::test_load_frame[ncrst] XFAIL (These refere...) [ 82%] tests/test_trajectory.py::test_load_frame[rst7] XFAIL (These referen...) [ 82%] tests/test_trajectory.py::test_load_frame[gro] XFAIL (Gro doesn't im...) [ 82%] tests/test_trajectory.py::test_load_frame_2eqq PASSED [ 82%] tests/test_trajectory.py::test_iterload[nc] PASSED [ 82%] tests/test_trajectory.py::test_iterload[h5] PASSED [ 82%] tests/test_trajectory.py::test_iterload[xtc] PASSED [ 82%] tests/test_trajectory.py::test_iterload[trr] PASSED [ 82%] tests/test_trajectory.py::test_iterload[dcd] PASSED [ 82%] tests/test_trajectory.py::test_iterload[mdcrd] PASSED [ 82%] tests/test_trajectory.py::test_iterload[dtr] XFAIL (This is broken w...) [ 82%] tests/test_trajectory.py::test_iterload[xyz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[xyz.gz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[lammpstrj] PASSED [ 83%] tests/test_trajectory.py::test_iterload[lh5] PASSED [ 83%] tests/test_trajectory.py::test_iterload[pdb] PASSED [ 83%] tests/test_trajectory.py::test_iterload[pdb.gz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[ncrst] SKIPPED (Only 1 frame...) [ 83%] tests/test_trajectory.py::test_iterload[rst7] SKIPPED (Only 1 frame ...) [ 83%] tests/test_trajectory.py::test_iterload[gro] PASSED [ 83%] tests/test_trajectory.py::test_iterload_skip[nc] PASSED [ 83%] tests/test_trajectory.py::test_iterload_skip[h5] PASSED [ 83%] tests/test_trajectory.py::test_iterload_skip[xtc] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[trr] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[dcd] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[mdcrd] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[dtr] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[xyz] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[xyz.gz] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[lammpstrj] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[lh5] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[pdb] XFAIL (PDB Iterloa...) [ 84%] tests/test_trajectory.py::test_iterload_skip[pdb.gz] XFAIL (PDB Iter...) [ 84%] tests/test_trajectory.py::test_iterload_skip[ncrst] XFAIL (These ref...) [ 84%] tests/test_trajectory.py::test_iterload_skip[rst7] XFAIL (These refe...) [ 85%] tests/test_trajectory.py::test_iterload_skip[gro] XFAIL (Not impleme...) [ 85%] tests/test_trajectory.py::test_iterload_chunk_dcd PASSED [ 85%] tests/test_trajectory.py::test_save_load[nc] PASSED [ 85%] tests/test_trajectory.py::test_save_load[h5] PASSED [ 85%] tests/test_trajectory.py::test_save_load[xtc] PASSED [ 85%] tests/test_trajectory.py::test_save_load[trr] PASSED [ 85%] tests/test_trajectory.py::test_save_load[dcd] PASSED [ 85%] tests/test_trajectory.py::test_save_load[mdcrd] PASSED [ 85%] tests/test_trajectory.py::test_save_load[dtr] PASSED [ 85%] tests/test_trajectory.py::test_save_load[xyz] PASSED [ 85%] tests/test_trajectory.py::test_save_load[xyz.gz] PASSED [ 86%] tests/test_trajectory.py::test_save_load[lammpstrj] PASSED [ 86%] tests/test_trajectory.py::test_save_load[lh5] PASSED [ 86%] tests/test_trajectory.py::test_save_load[pdb] PASSED [ 86%] tests/test_trajectory.py::test_save_load[pdb.gz] PASSED [ 86%] tests/test_trajectory.py::test_save_load[ncrst] PASSED [ 86%] tests/test_trajectory.py::test_save_load[rst7] PASSED [ 86%] tests/test_trajectory.py::test_save_load[gro] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[nc] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[h5] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[xtc] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[trr] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[dcd] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[mdcrd] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[dtr] XFAIL (This is b...) [ 87%] tests/test_trajectory.py::test_force_overwrite[xyz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[xyz.gz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[lammpstrj] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[lh5] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[pdb] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[pdb.gz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[ncrst] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[rst7] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[gro] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[nc] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[h5] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xtc] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[trr] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[dcd] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[mdcrd] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[dtr] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xyz] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xyz.gz] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[lammpstrj] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[lh5] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[pdb] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[pdb.gz] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[ncrst] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[rst7] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[gro] PASSED [ 89%] tests/test_trajectory.py::test_open_and_load PASSED [ 89%] tests/test_trajectory.py::test_length PASSED [ 89%] tests/test_trajectory.py::test_unitcell[nc] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[h5] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[xtc] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[trr] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[dcd] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[mdcrd] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[dtr] XFAIL (dtr seems to nee...) [ 90%] tests/test_trajectory.py::test_unitcell[xyz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[xyz.gz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[lammpstrj] XFAIL (lammpstrj ...) [ 90%] tests/test_trajectory.py::test_unitcell[lh5] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[pdb] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[pdb.gz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[ncrst] XFAIL (ncrst seems to...) [ 90%] tests/test_trajectory.py::test_unitcell[rst7] XFAIL (rst7 seems to n...) [ 90%] tests/test_trajectory.py::test_unitcell[gro] PASSED [ 91%] tests/test_trajectory.py::test_chunk0_iterload PASSED [ 91%] tests/test_trajectory.py::test_hashing PASSED [ 91%] tests/test_trajectory.py::test_smooth PASSED [ 91%] tests/test_trajectory.py::test_make_whole PASSED [ 91%] tests/test_trajectory.py::test_load_pdb_no_standard_names PASSED [ 91%] tests/test_trajectory.py::test_load_with_atom_indices PASSED [ 91%] tests/test_trajectory.py::test_atom_slicing PASSED [ 91%] tests/test_trajectory.py::test_load_with_frame PASSED [ 91%] tests/test_trajectory.py::test_add_remove_atoms PASSED [ 91%] tests/test_trr.py::test_1 PASSED [ 91%] tests/test_trr.py::test_read_stride PASSED [ 92%] tests/test_trr.py::test_read_stride_n_frames PASSED [ 92%] tests/test_trr.py::test_read_stride_offsets PASSED [ 92%] tests/test_trr.py::test_read_stride_n_frames_offsets PASSED [ 92%] tests/test_trr.py::test_read_stride_switching PASSED [ 92%] tests/test_trr.py::test_write_read PASSED [ 92%] tests/test_trr.py::test_read_atomindices_1 PASSED [ 92%] tests/test_trr.py::test_read_atomindices_2 PASSED [ 92%] tests/test_trr.py::test_deficient_shape PASSED [ 92%] tests/test_trr.py::test_ragged_1 PASSED [ 92%] tests/test_trr.py::test_ragged_2 PASSED [ 92%] tests/test_trr.py::test_malformed PASSED [ 92%] tests/test_trr.py::test_tell PASSED [ 93%] tests/test_trr.py::test_seek PASSED [ 93%] tests/test_trr.py::test_get_velocities PASSED [ 93%] tests/test_trr.py::test_get_forces PASSED [ 93%] tests/test_trr.py::test_get_velocities_and_forces PASSED [ 93%] tests/test_trr.py::test_get_velocities_forces_atom_indices_1 PASSED [ 93%] tests/test_trr.py::test_get_velocities_forces_atom_indices_2 PASSED [ 93%] tests/test_trr.py::test_read_velocities_do_not_exist PASSED [ 93%] tests/test_trr.py::test_read_forces_do_not_exist PASSED [ 93%] tests/test_unitcell.py::Test_Unitcell::test_valid[orthogonal] PASSED [ 93%] tests/test_unitcell.py::Test_Unitcell::test_valid[triclinic] PASSED [ 93%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360[over360] PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360[close] PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_valid_array PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360_array PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_angles_close_array PASSED [ 94%] tests/test_utils.py::test_unitcell_0 PASSED [ 94%] tests/test_utils.py::test_unitcell_1 PASSED [ 94%] tests/test_utils.py::test_ensure_type_1 PASSED [ 94%] tests/test_utils.py::test_ensure_type_2 PASSED [ 94%] tests/test_utils.py::test_ensure_type_25 PASSED [ 94%] tests/test_utils.py::test_ensure_type_3 PASSED [ 94%] tests/test_utils.py::test_ensure_type_4 PASSED [ 94%] tests/test_utils.py::test_ensure_type_5 PASSED [ 95%] tests/test_utils.py::test_ensure_type_6 PASSED [ 95%] tests/test_utils.py::test_ensure_type_7 PASSED [ 95%] tests/test_utils.py::test_ensure_type_8 PASSED [ 95%] tests/test_utils.py::test_ensure_type_9 PASSED [ 95%] tests/test_utils.py::test_ensure_type_10 PASSED [ 95%] tests/test_utils.py::test_ensure_type_11 PASSED [ 95%] tests/test_utils.py::test_ensure_type_12 PASSED [ 95%] tests/test_utils.py::test_ensure_type_13 PASSED [ 95%] tests/test_utils.py::test_ensure_type_14 PASSED [ 95%] tests/test_utils.py::test_ensure_type_15 PASSED [ 95%] tests/test_utils.py::test_delay_import_fail_1 PASSED [ 96%] tests/test_utils.py::test_delay_import PASSED [ 96%] tests/test_utils.py::test_unit_0 PASSED [ 96%] tests/test_utils.py::test_unit_1 PASSED [ 96%] tests/test_utils.py::test_unit_2 PASSED [ 96%] tests/test_utils.py::test_unit_3 PASSED [ 96%] tests/test_xml.py::test_xml PASSED [ 96%] tests/test_xtc.py::test_read_chunk1 PASSED [ 96%] tests/test_xtc.py::test_read_stride PASSED [ 96%] tests/test_xtc.py::test_read_stride_n_frames PASSED [ 96%] tests/test_xtc.py::test_read_stride_offsets PASSED [ 96%] tests/test_xtc.py::test_read_stride_n_frames_offsets PASSED [ 97%] tests/test_xtc.py::test_read_stride_switching_offsets PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_1 PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_w_stride PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_2 PASSED [ 97%] tests/test_xtc.py::test_read_chunk2 PASSED [ 97%] tests/test_xtc.py::test_read_chunk3 PASSED [ 97%] tests/test_xtc.py::test_write_0 PASSED [ 97%] tests/test_xtc.py::test_write_1 PASSED [ 97%] tests/test_xtc.py::test_write_2 PASSED [ 97%] tests/test_xtc.py::test_read_error_0 PASSED [ 97%] tests/test_xtc.py::test_write_error_0 PASSED [ 97%] tests/test_xtc.py::test_read_error_1 PASSED [ 98%] tests/test_xtc.py::test_read_error_2 PASSED [ 98%] tests/test_xtc.py::test_xtc_write_wierd_0 PASSED [ 98%] tests/test_xtc.py::test_tell PASSED [ 98%] tests/test_xtc.py::test_seek PASSED [ 98%] tests/test_xtc.py::test_seek_natoms9 PASSED [ 98%] tests/test_xtc.py::test_seek_out_of_bounds PASSED [ 98%] tests/test_xtc.py::test_ragged_1 PASSED [ 98%] tests/test_xtc.py::test_ragged_2 PASSED [ 98%] tests/test_xtc.py::test_short_traj PASSED [ 98%] tests/test_xtc.py::test_flush PASSED [ 98%] tests/test_xyz.py::test_read_0 PASSED [ 99%] tests/test_xyz.py::test_read_1 PASSED [ 99%] tests/test_xyz.py::test_read_gz PASSED [ 99%] tests/test_xyz.py::test_read_write PASSED [ 99%] tests/test_xyz.py::test_mdwrite PASSED [ 99%] tests/test_xyz.py::test_multiread PASSED [ 99%] tests/test_xyz.py::test_seek PASSED [ 99%] tests/test_xyz.py::test_len PASSED [ 99%] tests/test_zipped.py::test_read_gz PASSED [ 99%] tests/test_zipped.py::test_write_gz PASSED [ 99%] tests/test_zipped.py::test_read_bz2 PASSED [ 99%] tests/test_zipped.py::test_write_bz2 PASSED [100%] =============================== warnings summary =============================== tests/test_distance.py::Test_Distance::test_6 :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ SKIPPED [1] tests/test_dihedral.py:56: pymol executable not found SKIPPED [1] tests/test_dihedral.py:181: pymol executable not found SKIPPED [15] tests/test_docstrings.py:38: Skip checking certain modules' docstrings SKIPPED [1] tests/test_geometry.py:300: Not doing performance testing SKIPPED [1] tests/test_geometry.py:322: Not doing performance testing SKIPPED [1] tests/test_hdf5.py:105: requires openmm.units SKIPPED [1] tests/test_hdf5.py:156: requires openmm.units SKIPPED [1] tests/test_hdf5.py:223: requires openmm.units SKIPPED [1] tests/test_mol2.py:59: Requires obabel SKIPPED [1] tests/test_netcdf.py:274: This test requires cpptraj from AmberTools to be installed (http://ambermd.org) SKIPPED [1] tests/test_nmr.py:11: SPARTA+ binary not found SKIPPED [1] tests/test_nmr.py:26: PPM binary not found SKIPPED [1] tests/test_nmr.py:42: SHIFTX2 binary not found or running on travis. SKIPPED [2] tests/test_psf.py:93: This test requires the VMD executable: http://www.ks.uiuc.edu/Research/vmd/ SKIPPED [1] tests/test_rdf.py:64: Binning does not match up with gromacs currently. SKIPPED [1] tests/test_rdf.py:200: Binning does not match up with gromacs currently. SKIPPED [1] tests/test_reporter.py:58: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_reporter.py:145: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_reporter.py:245: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_selection.py:267: failed to parse selection SKIPPED [1] tests/test_thermodynamic_properties.py:161: Thermal expansion test doesn't work. SKIPPED [1] tests/test_topology.py:49: needs OpenMM SKIPPED [1] tests/test_topology.py:66: needs OpenMM SKIPPED [1] tests/test_topology.py:76: needs OpenMM SKIPPED [1] tests/test_topology.py:85: needs OpenMM SKIPPED [1] tests/test_topology.py:95: needs OpenMM SKIPPED [1] tests/test_topology.py:102: requires openmm >= 8.2 SKIPPED [1] tests/test_topology.py:284: needs OpenMM SKIPPED [1] tests/test_trajectory.py:129: xyz does not store box information SKIPPED [1] tests/test_trajectory.py:129: xyz.gz does not store box information SKIPPED [1] tests/test_trajectory.py:129: lh5 does not store box information SKIPPED [1] tests/test_trajectory.py:129: pdb does not store box information SKIPPED [1] tests/test_trajectory.py:129: pdb.gz does not store box information SKIPPED [1] tests/test_trajectory.py:225: mdcrd can only store rectilinear boxes SKIPPED [1] tests/test_trajectory.py:223: ncrst can only store 1 frame per file SKIPPED [1] tests/test_trajectory.py:223: rst7 can only store 1 frame per file SKIPPED [14] tests/test_trajectory.py:247: mdcrd can only store rectilinear boxes SKIPPED [14] tests/test_trajectory.py:245: ncrst can only store 1 frame per file SKIPPED [14] tests/test_trajectory.py:245: rst7 can only store 1 frame per file SKIPPED [4] tests/test_trajectory.py:255: dtr needs to write unitcells SKIPPED [4] tests/test_trajectory.py:255: lammpstrj needs to write unitcells SKIPPED [2] tests/test_trajectory.py:641: Only 1 frame per file format XFAIL tests/test_trajectory.py::test_read_path[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_path[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-nc] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-h5] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xtc] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-trr] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-dcd] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-mdcrd] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-dtr] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xyz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xyz.gz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-lammpstrj] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-lh5] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-pdb] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-pdb.gz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-gro] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-nc] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-h5] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xtc] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-trr] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-dcd] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-mdcrd] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-dtr] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xyz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xyz.gz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-lammpstrj] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-lh5] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-pdb] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-pdb.gz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-gro] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_float_atom_indices_exception[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_float_atom_indices_exception[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_combination[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_combination[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[xyz.gz] - reason: This is broken XFAIL tests/test_trajectory.py::test_seek_read_mode[pdb] - reason: PDB Files don't support seeking XFAIL tests/test_trajectory.py::test_seek_read_mode[pdb.gz] - reason: PDB Files don't support seeking XFAIL tests/test_trajectory.py::test_seek_read_mode[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[gro] - reason: This is broken XFAIL tests/test_trajectory.py::test_load_frame[dtr] - reason: DTR doesn't load a single frame properly XFAIL tests/test_trajectory.py::test_load_frame[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_frame[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_frame[gro] - reason: Gro doesn't implement seek XFAIL tests/test_trajectory.py::test_iterload[dtr] - reason: This is broken with dtr XFAIL tests/test_trajectory.py::test_iterload_skip[pdb] - reason: PDB Iterloads an extra frame!! XFAIL tests/test_trajectory.py::test_iterload_skip[pdb.gz] - reason: PDB Iterloads an extra frame!! XFAIL tests/test_trajectory.py::test_iterload_skip[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_iterload_skip[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_iterload_skip[gro] - reason: Not implemented for some reason XFAIL tests/test_trajectory.py::test_force_overwrite[dtr] - reason: This is broken with dtr XFAIL tests/test_trajectory.py::test_unitcell[dtr] - reason: dtr seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[lammpstrj] - reason: lammpstrj seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[ncrst] - reason: ncrst seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[rst7] - reason: rst7 seems to need unit vectors = 975 passed, 103 skipped, 22 deselected, 61 xfailed, 1 warning in 117.11s (0:01:57) = lugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) rm -fr -- /tmp/dh-xdg-rundir-pPiX3KDe create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-mdtraj.substvars rm -fr -- debian/.debhelper/generated/python3-mdtraj/ debian/python3-mdtraj/ debian/tmp/ dh_auto_install -a -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/mdtraj-1.11.0/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/mdtraj-1.11.0/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj Using built-in specs. COLLECT_GCC=/usr/bin/aarch64-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/14/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-19' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-19) warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Did not detect SSE2 support Attempting to autodetect SSE3 support... Did not detect SSE3 support Attempting to autodetect SSE4.1 support... Did not detect SSE4.1 support Attempting to autodetect NEON support... Compiler supports NEON [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py set /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py to '1.11.0' running build_ext building 'mdtraj.formats.xtc' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_xtc.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/xtc.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/xtc.c:1263: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/xtc.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-aarch64-linux-gnu.so building 'mdtraj.formats.trr' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_trr.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/trr.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/trr.c:1265: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/xtc/trr.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-aarch64-linux-gnu.so building 'mdtraj.formats.dcd' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/dcd.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/dcd.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dcd/dcd.c:1260: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/src/dcdplugin.c -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/dcd.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-aarch64-linux-gnu.so building 'mdtraj.formats.dtr' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/dtr.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/dtr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dtr/dtr.cpp:1279: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/src/dtrplugin.cxx -o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dtr/src/dtrplugin.cxx: In member function ‘bool desres::molfile::Timekeys::init(const std::string&)’: mdtraj/formats/dtr/src/dtrplugin.cxx:487:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %ld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:487:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %ld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:706:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 706 | sprintf(sub, "%03x/", i); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:706:22: note: directive argument in the range [0, 2147483646] 706 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from mdtraj/formats/dtr/include/molfile_plugin.h:35, from mdtraj/formats/dtr/include/dtrplugin.hxx:46, from mdtraj/formats/dtr/src/dtrplugin.cxx:42: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:706:9: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:714:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(subsub, "%03x", j); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:714:29: note: directive argument in the range [0, 2147483646] 714 | sprintf(subsub, "%03x", j); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:714:13: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:667:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 667 | sprintf(answer, "%03x/", d1); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:667:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:665:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function ‘std::string DDreldir(const std::string&, int, int)’, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: mdtraj/formats/dtr/src/dtrplugin.cxx:665:29: note: directive argument in the range [0, 2147483646] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:665:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/dtr.o build/temp.linux-aarch64-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-aarch64-linux-gnu.so building 'mdtraj._rmsd' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/_rmsd.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_rmsd.cpp:1298: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/_rmsd.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-aarch64-linux-gnu.so building 'mdtraj._lprmsd' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/_lprmsd.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_lprmsd.cpp:1305: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/Munkres.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/fancy_index.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/_lprmsd.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/Munkres.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/fancy_index.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-aarch64-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-aarch64-linux-gnu.so building 'mdtraj.geometry._geometry' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/_geometry.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/geometry/src/_geometry.cpp:1287: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/dssp.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/geometry.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/sasa.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/_geometry.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/dssp.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/geometry.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/sasa.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-aarch64-linux-gnu.so building 'mdtraj.geometry.drid' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/drid.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/drid.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/dridkernels.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/moments.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/geometry/drid.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/dridkernels.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/moments.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-aarch64-linux-gnu.so building 'mdtraj.geometry.neighbors' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/neighbors.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/neighbors.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/geometry/neighbors.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/neighbors.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-aarch64-linux-gnu.so building 'mdtraj.geometry.neighborlist' extension aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/neighborlist.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/neighborlist.o -fopenmp -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/mdtraj/geometry/neighborlist.o build/temp.linux-aarch64-cpython-313/mdtraj/geometry/src/neighborlist.o -L/usr/lib/aarch64-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-aarch64-linux-gnu.so running install_lib creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/scalar_couplings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/shift_wrappers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/pi_stacking.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/internal.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/contact.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/hbond.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rg.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/angle.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dihedral.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/sasa.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/shape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/order.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/thermodynamic_properties.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/pi_stacking.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdinspect.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdconvert.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/pdbx.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/PdbxReader.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/PdbxContainers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/pdbx.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/PdbxReader.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/PdbxContainers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/pdbxfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/pdbxfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/amberrst.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/registry.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/psf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/prmtop.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/arc.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mol2.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lh5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mdcrd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gro.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/netcdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/openmmxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hdf5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gsd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lammpstrj.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/xyzfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hoomdxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbstructure.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/io.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/rotation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/singleton.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/validation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/zipped.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/contextmanagers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/unitcell.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/delay_import.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/mymatrix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/quantity.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/baseunit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/prefix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_operators.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_definitions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_math.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/standard_dimensions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/basedimension.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/doctests.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/topology.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/trajectory.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/element.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/residue_names.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/selection.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/center.h -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/theobald_rmsd.h -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docscrape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docstrings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/testing.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/xtcreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/netcdfreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/dcdreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/hdf5reporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/basereporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/README.md -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/.gitignore -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/scalar_couplings.py to scalar_couplings.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/shift_wrappers.py to shift_wrappers.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/pi_stacking.py to pi_stacking.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/order.py to order.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/contact.py to contact.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/internal.py to internal.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rdf.py to rdf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dihedral.py to dihedral.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rg.py to rg.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/hbond.py to hbond.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/thermodynamic_properties.py to thermodynamic_properties.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/shape.py to shape.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/sasa.py to sasa.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dssp.py to dssp.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/angle.py to angle.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdconvert.py to mdconvert.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdinspect.py to mdinspect.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lh5.py to lh5.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbx.py to pdbx.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxReader.py to PdbxReader.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxContainers.py to PdbxContainers.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbxfile.py to pdbxfile.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/netcdf.py to netcdf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/prmtop.py to prmtop.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/arc.py to arc.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hoomdxml.py to hoomdxml.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gsd.py to gsd.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/amberrst.py to amberrst.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/openmmxml.py to openmmxml.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbstructure.py to pdbstructure.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/xyzfile.py to xyzfile.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mol2.py to mol2.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/registry.py to registry.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/psf.py to psf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gro.py to gro.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mdcrd.py to mdcrd.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lammpstrj.py to lammpstrj.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hdf5.py to hdf5.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/delay_import.py to delay_import.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/singleton.py to singleton.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/zipped.py to zipped.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_math.py to unit_math.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/prefix.py to prefix.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/quantity.py to quantity.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/mymatrix.py to mymatrix.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_operators.py to unit_operators.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/baseunit.py to baseunit.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/doctests.py to doctests.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_definitions.py to unit_definitions.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit.py to unit.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/basedimension.py to basedimension.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/standard_dimensions.py to standard_dimensions.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/validation.py to validation.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unitcell.py to unitcell.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/rotation.py to rotation.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/contextmanagers.py to contextmanagers.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/topology.py to topology.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/selection.py to selection.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/residue_names.py to residue_names.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/element.py to element.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/trajectory.py to trajectory.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docstrings.py to docstrings.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/testing.py to testing.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docscrape.py to docscrape.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/basereporter.py to basereporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/xtcreporter.py to xtcreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/dcdreporter.py to dcdreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/netcdfreporter.py to netcdfreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/hdf5reporter.py to hdf5reporter.cpython-313.pyc running install_egg_info running egg_info creating mdtraj.egg-info writing mdtraj.egg-info/PKG-INFO writing dependency_links to mdtraj.egg-info/dependency_links.txt writing entry points to mdtraj.egg-info/entry_points.txt writing requirements to mdtraj.egg-info/requires.txt writing top-level names to mdtraj.egg-info/top_level.txt writing manifest file 'mdtraj.egg-info/SOURCES.txt' dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'mdtraj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching '__pycache__' no previously-included directories found matching '*.pyc' adding license file 'LICENSE' writing manifest file 'mdtraj.egg-info/SOURCES.txt' Copying mdtraj.egg-info to /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj-1.11.0.egg-info Skipping SOURCES.txt running install_scripts Installing mdconvert-mdtraj script to /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/bin Installing mdinspect script to /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/bin dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/copyright debian/python3-mdtraj/usr/share/doc/python3-mdtraj/copyright dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.trimmed debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/man/man1/ install -p -m0644 ./debian/mdconvert-mdtraj.1 debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 install -m0755 -d debian/python3-mdtraj/usr/share/man/man1/ install -p -m0644 ./debian/mdinspect.1 debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 mv debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 mv debian/python3-mdtraj/usr/share/man/man1/mdinspect.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:174: source=mdtraj, binary packages=['python3-mdtraj'] D: dh_python3 dh_python3:205: processing package python3-mdtraj... D: dh_python3 fs:50: moving files from debian/python3-mdtraj/usr/lib/python3.13/dist-packages to debian/python3-mdtraj/usr/lib/python3/dist-packages/ I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdconvert-mdtraj I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdinspect D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:338: package python3-mdtraj details = {'requires.txt': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-mdtraj D: dh_python3 pydist:175: trying to find dependency for numpy<3,>=1.25.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for packaging (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pyparsing (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for scipy (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-numpy (>= 2.0.0~)', 'python3-packaging', 'python3 (<< 3.14)', 'python3-scipy', 'python3-pyparsing', 'python3 (>= 3.13~)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.0' # setup.py builds the static lib libtheobald.a for each python version # but dh_python3 can't tell the difference between the different builds, # since py3.11 compiles libtheobald.o with -fwrapv, where py3.12 uses -fno-strict-overflow # So clean up manually (assume the binary difference is not an issue) rm -f debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib/libtheobald.a for d in debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib; do if [-d $d]; then rmdir -p --ignore-fail-on-non-empty $d; fi; done /bin/sh: 1: [-d: not found make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.11.0' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-mdtraj chmod a-x usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 gzip -9nf usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 cd '/build/reproducible-path/mdtraj-1.11.0' dh_fixperms -a -O--buildsystem=pybuild find debian/python3-mdtraj ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-mdtraj/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-mdtraj/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-mdtraj/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-mdtraj/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-mdtraj/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-mdtraj.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-mdtraj.debug -- debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-mdtraj/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-mdtraj.debug chmod 0644 -- debian/python3-mdtraj/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-mdtraj.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d9/cc92d5b0e890c973aa5e1b429e8133fdb91be1.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d9/cc92d5b0e890c973aa5e1b429e8133fdb91be1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d9/cc92d5b0e890c973aa5e1b429e8133fdb91be1.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/5c objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/5c/7c4c47e1be596609d4fa0c1e11e0f61ce59dc5.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/5c/7c4c47e1be596609d4fa0c1e11e0f61ce59dc5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/5c/7c4c47e1be596609d4fa0c1e11e0f61ce59dc5.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a1/4f76a1b4ec75e01f521b8033bd57dd72e61b9f.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a1/4f76a1b4ec75e01f521b8033bd57dd72e61b9f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a1/4f76a1b4ec75e01f521b8033bd57dd72e61b9f.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/cb objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/cb/8ec08a1bc6eedcbb7c0973f35af12e15c826a5.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/cb/8ec08a1bc6eedcbb7c0973f35af12e15c826a5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/cb/8ec08a1bc6eedcbb7c0973f35af12e15c826a5.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4d/c650750aac4bf4cb66c61c22e027c81bf7557c.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4d/c650750aac4bf4cb66c61c22e027c81bf7557c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4d/c650750aac4bf4cb66c61c22e027c81bf7557c.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/1d/1d3d8bb5aa310f972d71f890ab66735e6b6b0b.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/1d/1d3d8bb5aa310f972d71f890ab66735e6b6b0b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/1d/1d3d8bb5aa310f972d71f890ab66735e6b6b0b.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/2c/c7ffa238e3cde892961274425dc8c174da7947.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/2c/c7ffa238e3cde892961274425dc8c174da7947.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/2c/c7ffa238e3cde892961274425dc8c174da7947.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/76 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/76/d45113f017c0dbb18ebcebd6a2b1067c29b3e0.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/76/d45113f017c0dbb18ebcebd6a2b1067c29b3e0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/76/d45113f017c0dbb18ebcebd6a2b1067c29b3e0.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/b4 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/b4/d6afaef3dfe1dff786b14d60dc26729e86107d.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/b4/d6afaef3dfe1dff786b14d60dc26729e86107d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/b4/d6afaef3dfe1dff786b14d60dc26729e86107d.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/cb objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/cb/b443aa6592ab35ed5fb5b7224f9c0618d27938.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/cb/b443aa6592ab35ed5fb5b7224f9c0618d27938.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/cb/b443aa6592ab35ed5fb5b7224f9c0618d27938.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-aarch64-linux-gnu.so strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/core/lib/libtheobald.a install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-mdtraj/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-mdtraj/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-mdtraj/usr/lib/debug install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/share/doc ln -s python3-mdtraj debian/.debhelper/python3-mdtraj/dbgsym-root/usr/share/doc/python3-mdtraj-dbgsym install -m0755 -d debian/.debhelper/python3-mdtraj dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-mdtraj/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN dpkg-shlibdeps -Tdebian/python3-mdtraj.substvars debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-aarch64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/postinst cat debian/python3-mdtraj.postinst.debhelper >> debian/python3-mdtraj/DEBIAN/postinst chmod 0755 -- debian/python3-mdtraj/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/prerm cat debian/python3-mdtraj.prerm.debhelper >> debian/python3-mdtraj/DEBIAN/prerm chmod 0755 -- debian/python3-mdtraj/DEBIAN/prerm dh_numpy3 -a -O--buildsystem=pybuild Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. mv debian/python3-mdtraj.substvars.new debian/python3-mdtraj.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN echo misc:Depends= >> debian/python3-mdtraj.substvars echo misc:Pre-Depends= >> debian/python3-mdtraj.substvars install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/.debhelper/python3-mdtraj/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-mdtraj-dbgsym "-DDepends=python3-mdtraj (= \${binary:Version})" "-DDescription=debug symbols for python3-mdtraj" "-DBuild-Ids=1d1d3d8bb5aa310f972d71f890ab66735e6b6b0b 2cc7ffa238e3cde892961274425dc8c174da7947 4dc650750aac4bf4cb66c61c22e027c81bf7557c 5c7c4c47e1be596609d4fa0c1e11e0f61ce59dc5 76d45113f017c0dbb18ebcebd6a2b1067c29b3e0 a14f76a1b4ec75e01f521b8033bd57dd72e61b9f b4d6afaef3dfe1dff786b14d60dc26729e86107d cb8ec08a1bc6eedcbb7c0973f35af12e15c826a5 cbb443aa6592ab35ed5fb5b7224f9c0618d27938 d9cc92d5b0e890c973aa5e1b429e8133fdb91be1" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/python3-mdtraj chmod 0644 -- debian/python3-mdtraj/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN cd debian/python3-mdtraj >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-mdtraj/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN cd debian/.debhelper/python3-mdtraj/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-mdtraj .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-mdtraj/dbgsym-root .. dpkg-deb: building package 'python3-mdtraj-dbgsym' in '../python3-mdtraj-dbgsym_1.11.0-1_arm64.deb'. dpkg-deb: building package 'python3-mdtraj' in '../python3-mdtraj_1.11.0-1_arm64.deb'. dpkg-genbuildinfo --build=any -O../mdtraj_1.11.0-1_arm64.buildinfo dpkg-genchanges --build=any -O../mdtraj_1.11.0-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from mdtraj-1.11.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-10-03T17:58:40Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 03 Oct 2025 17:58:41 +0000 | +------------------------------------------------------------------------------+ mdtraj_1.11.0-1_arm64.changes: ------------------------------ Format: 1.8 Date: Mon, 11 Aug 2025 19:30:51 +0200 Source: mdtraj Binary: python3-mdtraj python3-mdtraj-dbgsym Architecture: arm64 Version: 1.11.0-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python3-mdtraj - Read, write and analyze MD trajectories in Python Changes: mdtraj (1.11.0-1) unstable; urgency=medium . * New upstream release - versioned Build-Depends: python3-numpy (>= 2.0.0~) * drop debian patch revert_flaky_PR1972.patch for new upstream release * Build-Depends: dh-sequence-numpy3 and remove dh_numpy3 from execute_after_dh_python3 * Standards-Version: 4.7.2 * Depends: python3-pytest-rerunfailures (for rerun option in pytest.mark.flaky). Run build-time tests . * debian/tests: skip example pi_stacking.ipynb (needs py3Dmol) * apply test skips from debian/tests to PYBUILD_TEST_ARGS in debian/rules (skip tests needing internet or 3rd party packages) * skip mdconvert in build tests (binary not yet accessible) * debian patch openmm_version_skip.patch skips test_topology_openmm_formal_charges in test_topology if openmm 8.2 or later is not available (introducing the formal_charges API). See also upstream #1956, PR#1967. 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LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1754933451" +------------------------------------------------------------------------------+ | Package contents Fri, 03 Oct 2025 17:58:42 +0000 | +------------------------------------------------------------------------------+ python3-mdtraj-dbgsym_1.11.0-1_arm64.deb ---------------------------------------- new Debian package, version 2.0. size 5526536 bytes: control archive=1036 bytes. 744 bytes, 12 lines control 1152 bytes, 11 lines md5sums Package: python3-mdtraj-dbgsym Source: mdtraj Version: 1.11.0-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debichem Team Installed-Size: 5803 Depends: python3-mdtraj (= 1.11.0-1) Section: debug Priority: optional Description: debug symbols for python3-mdtraj Build-Ids: 1d1d3d8bb5aa310f972d71f890ab66735e6b6b0b 2cc7ffa238e3cde892961274425dc8c174da7947 4dc650750aac4bf4cb66c61c22e027c81bf7557c 5c7c4c47e1be596609d4fa0c1e11e0f61ce59dc5 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lines control 10660 bytes, 114 lines md5sums 275 bytes, 12 lines * postinst #!/bin/sh 388 bytes, 12 lines * prerm #!/bin/sh Package: python3-mdtraj Source: mdtraj Version: 1.11.0-1 Architecture: arm64 Maintainer: Debichem Team Installed-Size: 4337 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3-numpy (>= 2.0.0~), python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), python3-networkx, python3-pandas, python3-tables Recommends: python3-gsd, python3-netcdf4 Suggests: python-mdtraj-doc Section: python Priority: optional Homepage: https://mdtraj.org/ Description: Read, write and analyze MD trajectories in Python Read, write and analyze MD trajectories with only a few lines of Python code. . MDTraj is a Python library that allows users to manipulate molecular dynamics (MD) trajectories. Features include: * Wide MD format support, including pdb, xtc, trr, dcd, binpos, netcdf, mdcrd, prmtop, and more. * Extremely fast RMSD calculations (4x the speed of the original Theobald QCP). * Extensive analysis functions including those that compute bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR observables. * Lightweight, Pythonic API. . MDTraj includes a command-line application, mdconvert-mdtraj, for converting trajectories between formats. . This package installs the library for Python 3, together with the command line utilities mdconvert-mdtraj and mdinspect. drwxr-xr-x root/root 0 2025-08-11 17:30 ./ drwxr-xr-x root/root 0 2025-08-11 17:30 ./usr/ drwxr-xr-x root/root 0 2025-08-11 17:30 ./usr/bin/ -rwxr-xr-x root/root 977 2025-08-11 17:30 ./usr/bin/mdconvert-mdtraj -rwxr-xr-x root/root 963 2025-08-11 17:30 ./usr/bin/mdinspect drwxr-xr-x root/root 0 2025-08-11 17:30 ./usr/lib/ drwxr-xr-x root/root 0 2025-08-11 17:30 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-08-11 17:30 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-08-11 17:30 ./usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/ -rw-r--r-- root/root 2567 2025-08-11 17:30 ./usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-08-11 17:30 ./usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/dependency_links.txt -rw-r--r-- root/root 123 2025-08-11 17:30 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+------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 164104 Build-Time: 420 Distribution: unstable Host Architecture: arm64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdY8E5LS/inputs/mdtraj_1.11.0-1.dsc Machine Architecture: arm64 Package: mdtraj Package-Time: 440 Source-Version: 1.11.0-1 Space: 164104 Status: successful Version: 1.11.0-1 -------------------------------------------------------------------------------- Finished at 2025-10-03T17:58:40Z Build needed 00:07:20, 164104k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdY8E5LS/out size differs for python3-mdtraj-dbgsym_1.11.0-1_arm64.deb checking python3-mdtraj-dbgsym_1.11.0-1_arm64.deb: