===============================================================================

About this build: this rebuild has been done as part of reproduce.debian.net
where we aim to reproduce Debian binary packages distributed via ftp.debian.org,
by rebuilding using the exact same packages as the original build on the buildds,
as described in the relevant .buildinfo file from buildinfos.debian.net.

For more information please go to https://reproduce.debian.net or join
#debian-reproducible on irc.debian.org

===============================================================================

Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdaRUinG/inputs/python-pysam_0.23.0+ds-1+b1_armel.buildinfo
Source: python-pysam
Version: 0.23.0+ds-1
rebuilderd-worker node: codethink05-arm64

+------------------------------------------------------------------------------+
| Downloading sources                          Thu, 24 Jul 2025 04:14:55 +0000 |
+------------------------------------------------------------------------------+

Get:1 https://deb.debian.org/debian trixie InRelease [168 kB]
Get:2 https://deb.debian.org/debian sid InRelease [213 kB]
Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB]
Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB]
Fetched 21.9 MB in 2s (9596 kB/s)
Reading package lists...
'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds-1.dsc' python-pysam_0.23.0+ds-1.dsc 2441 SHA256:6f03755627321ef54c141a0a6ea4fb8d3b9816c75052fbbc133a185a4f847f09
'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds.orig.tar.xz' python-pysam_0.23.0+ds.orig.tar.xz 1519052 SHA256:c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd
'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds-1.debian.tar.xz' python-pysam_0.23.0+ds-1.debian.tar.xz 10632 SHA256:9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440
c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd  python-pysam_0.23.0+ds.orig.tar.xz
9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440  python-pysam_0.23.0+ds-1.debian.tar.xz
6f03755627321ef54c141a0a6ea4fb8d3b9816c75052fbbc133a185a4f847f09  python-pysam_0.23.0+ds-1.dsc

+------------------------------------------------------------------------------+
| Calling debrebuild                           Thu, 24 Jul 2025 04:14:58 +0000 |
+------------------------------------------------------------------------------+

Rebuilding python-pysam=0.23.0+ds-1 in /srv/rebuilderd/tmp/rebuilderdaRUinG/inputs now.
+ nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdaRUinG/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdaRUinG/inputs/python-pysam_0.23.0+ds-1+b1_armel.buildinfo
/srv/rebuilderd/tmp/rebuilderdaRUinG/inputs/python-pysam_0.23.0+ds-1+b1_armel.buildinfo contains a GPG signature which has NOT been validated
Using defined Build-Path: /build/reproducible-path/python-pysam-0.23.0+ds
I: verifying dsc... successful!
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid InRelease [205 kB]
Get:2 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel Packages [9548 kB]
Fetched 9753 kB in 1s (9541 kB/s)
Reading package lists...
W: http://snapshot.debian.org/archive/debian/20250227T025207Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libcc1-0 armel 14.2.0-17 [31.7 kB]
Fetched 31.7 kB in 0s (1989 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp577cbpeo/libcc1-0_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel dpkg armel 1.22.15 [1482 kB]
Fetched 1482 kB in 0s (54.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpefd0kqv9/dpkg_1.22.15_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3 armel 3.13.2-1 [28.1 kB]
Fetched 28.1 kB in 0s (1693 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp3q0y8ck/python3_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libcurl4-gnutls-dev armel 8.12.1-3 [435 kB]
Fetched 435 kB in 0s (21.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptzbb4p2k/libcurl4-gnutls-dev_8.12.1-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libstdc++6 armel 14.2.0-17 [594 kB]
Fetched 594 kB in 0s (27.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwcgrb53n/libstdc++6_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel debconf all 1.5.89 [120 kB]
Fetched 120 kB in 0s (6867 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvzzxbxyk/debconf_1.5.89_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libselinux1 armel 3.8-4 [76.6 kB]
Fetched 76.6 kB in 0s (4522 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxdo9gl0n/libselinux1_3.8-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libffi8 armel 3.4.7-1 [20.2 kB]
Fetched 20.2 kB in 0s (1192 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0y5ux8ti/libffi8_3.4.7-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel findutils armel 4.10.0-3 [687 kB]
Fetched 687 kB in 0s (31.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpledsk7sz/findutils_4.10.0-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libssl-dev armel 3.4.1-1 [2402 kB]
Fetched 2402 kB in 0s (64.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3murv36e/libssl-dev_3.4.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libunistring5 armel 1.3-1 [430 kB]
Fetched 430 kB in 0s (22.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplimo717b/libunistring5_1.3-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libunbound8 armel 1.22.0-1+b1 [535 kB]
Fetched 535 kB in 0s (35.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpefo4f88h/libunbound8_1.22.0-1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpython3.13-minimal armel 3.13.2-1 [845 kB]
Fetched 845 kB in 0s (36.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmloxtf1j/libpython3.13-minimal_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel man-db armel 2.13.0-1 [1381 kB]
Fetched 1381 kB in 0s (50.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ys78fjk/man-db_2.13.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel sensible-utils all 0.0.24 [24.8 kB]
Fetched 24.8 kB in 0s (1448 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzr29lpbp/sensible-utils_0.0.24_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libdebhelper-perl all 13.24.1 [90.9 kB]
Fetched 90.9 kB in 0s (5355 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa507nox5/libdebhelper-perl_13.24.1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel liblzma5 armel 5.6.3-1+b1 [260 kB]
Fetched 260 kB in 0s (14.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp72q1ifqp/liblzma5_5.6.3-1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libdeflate-dev armel 1.23-1+b1 [42.1 kB]
Fetched 42.1 kB in 0s (2526 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc1xr33c0/libdeflate-dev_1.23-1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgcc-14-dev armel 14.2.0-17 [760 kB]
Fetched 760 kB in 0s (32.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplr7671t4/libgcc-14-dev_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libhogweed6t64 armel 3.10.1-1 [321 kB]
Fetched 321 kB in 0s (17.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1jr522j/libhogweed6t64_3.10.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libtinfo6 armel 6.5+20250216-1 [332 kB]
Fetched 332 kB in 0s (17.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3jwiukl5/libtinfo6_6.5+20250216-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel tar armel 1.35+dfsg-3.1 [793 kB]
Fetched 793 kB in 0s (46.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9qyfael/tar_1.35+dfsg-3.1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel build-essential armel 12.12 [4624 B]
Fetched 4624 B in 0s (290 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6glm1tdx/build-essential_12.12_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Fetched 22.9 kB in 0s (1375 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp28pwzj3b/intltool-debian_0.35.0+20060710.6_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libcap2 armel 1:2.73-4 [24.3 kB]
Fetched 24.3 kB in 0s (1506 kB/s)
dpkg-name: info: moved 'libcap2_1%3a2.73-4_armel.deb' to '/srv/rebuilderd/tmp/tmpbej2z2_x/libcap2_2.73-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpython3-dev armel 3.13.2-1 [10.3 kB]
Fetched 10.3 kB in 0s (572 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi6q94our/libpython3-dev_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-packaging all 24.2-1 [55.3 kB]
Fetched 55.3 kB in 0s (3815 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvnbxm6h8/python3-packaging_24.2-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libngtcp2-16 armel 1.9.1-1 [115 kB]
Fetched 115 kB in 0s (6497 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqfi7eg94/libngtcp2-16_1.9.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel tzdata all 2025a-2 [259 kB]
Fetched 259 kB in 0s (13.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xrizwu_/tzdata_2025a-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libhtscodecs2 armel 1.6.1-2 [64.0 kB]
Fetched 64.0 kB in 0s (3845 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg8h7__s/libhtscodecs2_1.6.1-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libkeyutils1 armel 1.6.3-4 [8120 B]
Fetched 8120 B in 0s (499 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb6hjrjn1/libkeyutils1_1.6.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel binutils-common armel 2.44-2 [2508 kB]
Fetched 2508 kB in 0s (66.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzjklnb18/binutils-common_2.44-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel ncurses-bin armel 6.5+20250216-1 [430 kB]
Fetched 430 kB in 0s (24.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5f_kdfyx/ncurses-bin_6.5+20250216-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgnutls-dane0t64 armel 3.8.9-2 [448 kB]
Fetched 448 kB in 0s (31.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpawrh7ic0/libgnutls-dane0t64_3.8.9-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgomp1 armel 14.2.0-17 [113 kB]
Fetched 113 kB in 0s (6609 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3npktsu/libgomp1_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel bcftools armel 1.21-1 [687 kB]
Fetched 687 kB in 0s (30.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_kfbka7b/bcftools_1.21-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libseccomp2 armel 2.5.5-2 [46.1 kB]
Fetched 46.1 kB in 0s (2752 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpakska_9j/libseccomp2_2.5.5-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libuuid1 armel 2.40.4-5 [35.5 kB]
Fetched 35.5 kB in 0s (2445 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0n21xnpw/libuuid1_2.40.4-5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libstdc++-14-dev armel 14.2.0-17 [2376 kB]
Fetched 2376 kB in 0s (65.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzl1rdk5t/libstdc++-14-dev_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libzstd1 armel 1.5.6+dfsg-2 [265 kB]
Fetched 265 kB in 0s (14.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfumgr7d_/libzstd1_1.5.6+dfsg-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libasan8 armel 14.2.0-17 [2550 kB]
Fetched 2550 kB in 0s (67.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpje9np4hg/libasan8_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel gettext armel 0.23.1-1 [1544 kB]
Fetched 1544 kB in 0s (53.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj_hlwqyq/gettext_0.23.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpsl5t64 armel 0.21.2-1.1+b1 [55.9 kB]
Fetched 55.9 kB in 0s (3396 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpramcz1jr/libpsl5t64_0.21.2-1.1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel linux-libc-dev all 6.12.16-1 [2522 kB]
Fetched 2522 kB in 0s (69.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0rj5p38o/linux-libc-dev_6.12.16-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libngtcp2-crypto-gnutls8 armel 1.9.1-1 [15.5 kB]
Fetched 15.5 kB in 0s (880 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpstooqlya/libngtcp2-crypto-gnutls8_1.9.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpython3.13-dev armel 3.13.2-1 [3630 kB]
Fetched 3630 kB in 0s (75.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb940736j/libpython3.13-dev_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel autopoint all 0.23.1-1 [770 kB]
Fetched 770 kB in 0s (33.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph3w6gcbh/autopoint_0.23.1-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libcrypt1 armel 1:4.4.38-1 [97.4 kB]
Fetched 97.4 kB in 0s (5407 kB/s)
dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_armel.deb' to '/srv/rebuilderd/tmp/tmp2qjf0moi/libcrypt1_4.4.38-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libsframe1 armel 2.44-2 [76.5 kB]
Fetched 76.5 kB in 0s (5028 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplrt3mau4/libsframe1_2.44-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel po-debconf all 1.0.21+nmu1 [248 kB]
Fetched 248 kB in 0s (13.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppru9k53q/po-debconf_1.0.21+nmu1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgnutls28-dev armel 3.8.9-2 [1333 kB]
Fetched 1333 kB in 0s (49.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9e2du8dz/libgnutls28-dev_3.8.9-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel debhelper all 13.24.1 [920 kB]
Fetched 920 kB in 0s (47.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprqpa6fb9/debhelper_13.24.1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libsqlite3-0 armel 3.46.1-1 [794 kB]
Fetched 794 kB in 0s (33.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeb5nui7o/libsqlite3-0_3.46.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libncurses6 armel 6.5+20250216-1 [83.4 kB]
Fetched 83.4 kB in 0s (4638 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpurt5xq2g/libncurses6_6.5+20250216-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel nettle-dev armel 3.10.1-1 [1314 kB]
Fetched 1314 kB in 0s (48.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp833unoyj/nettle-dev_3.10.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libblkid1 armel 2.40.4-5 [157 kB]
Fetched 157 kB in 0s (8971 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaejxl6xe/libblkid1_2.40.4-5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libc-dev-bin armel 2.40-7 [55.7 kB]
Fetched 55.7 kB in 0s (3018 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjtwipqq1/libc-dev-bin_2.40-7_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libcap-ng0 armel 0.8.5-4 [15.6 kB]
Fetched 15.6 kB in 0s (980 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ad_4e2q/libcap-ng0_0.8.5-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpsl-dev armel 0.21.2-1.1+b1 [77.0 kB]
Fetched 77.0 kB in 0s (4505 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamga3wbj/libpsl-dev_0.21.2-1.1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel ncurses-base all 6.5+20250216-1 [273 kB]
Fetched 273 kB in 0s (14.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp00fp0tce/ncurses-base_6.5+20250216-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libnghttp3-dev armel 1.6.0-2 [82.1 kB]
Fetched 82.1 kB in 0s (4974 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn88hkgga/libnghttp3-dev_1.6.0-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3.13 armel 3.13.2-1 [745 kB]
Fetched 745 kB in 0s (33.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe70rg_3x/python3.13_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel g++ armel 4:14.2.0-1 [1328 B]
Fetched 1328 B in 0s (82.7 kB/s)
dpkg-name: info: moved 'g++_4%3a14.2.0-1_armel.deb' to '/srv/rebuilderd/tmp/tmpv1_hbuj_/g++_14.2.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Fetched 19.7 kB in 0s (1216 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp44j59ebs/libfile-stripnondeterminism-perl_1.14.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel tabix armel 1.21+ds-1 [422 kB]
Fetched 422 kB in 0s (20.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqarvcm_x/tabix_1.21+ds-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel dh-autoreconf all 20 [17.1 kB]
Fetched 17.1 kB in 0s (737 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptc901fys/dh-autoreconf_20_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libp11-kit0 armel 0.25.5-3 [399 kB]
Fetched 399 kB in 0s (20.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdvpu8k4x/libp11-kit0_0.25.5-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel perl-modules-5.40 all 5.40.1-2 [3017 kB]
Fetched 3017 kB in 0s (68.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk2x3c1kz/perl-modules-5.40_5.40.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libelf1t64 armel 0.192-4 [186 kB]
Fetched 186 kB in 0s (9354 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdhlx8si/libelf1t64_0.192-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-more-itertools all 10.6.0-1 [65.3 kB]
Fetched 65.3 kB in 0s (3924 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp20nar1x6/python3-more-itertools_10.6.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel samtools armel 1.21-1 [629 kB]
Fetched 629 kB in 0s (29.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpid_s99gl/samtools_1.21-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libkrb5support0 armel 1.21.3-4 [30.3 kB]
Fetched 30.3 kB in 0s (1864 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd99ndevh/libkrb5support0_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpython3-all-dev armel 3.13.2-1 [1068 B]
Fetched 1068 B in 0s (67.9 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfjdus4ur/libpython3-all-dev_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel groff-base armel 1.23.0-7 [1091 kB]
Fetched 1091 kB in 0s (41.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_g863hc0/groff-base_1.23.0-7_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-all-dev armel 3.13.2-1 [1068 B]
Fetched 1068 B in 0s (56.0 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4qdqz5na/python3-all-dev_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libidn2-0 armel 2.3.7-2+b1 [124 kB]
Fetched 124 kB in 0s (7161 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp53a1fjof/libidn2-0_2.3.7-2+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgssapi-krb5-2 armel 1.21.3-4 [114 kB]
Fetched 114 kB in 0s (5858 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt9cd9t0w/libgssapi-krb5-2_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libcurl3t64-gnutls armel 8.12.1-3 [311 kB]
Fetched 311 kB in 0s (15.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbk0lfey/libcurl3t64-gnutls_8.12.1-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-all armel 3.13.2-1 [1048 B]
Fetched 1048 B in 0s (65.4 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkmfzkjag/python3-all_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel grep armel 3.11-4 [420 kB]
Fetched 420 kB in 0s (20.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzqglnodw/grep_3.11-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libmpfr6 armel 4.2.1-1+b2 [594 kB]
Fetched 594 kB in 0s (34.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4nhyf7b9/libmpfr6_4.2.1-1+b2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel dash armel 0.5.12-12 [91.5 kB]
Fetched 91.5 kB in 0s (5513 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsg0dtszy/dash_0.5.12-12_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libnghttp2-dev armel 1.64.0-1 [103 kB]
Fetched 103 kB in 0s (6639 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzpjm99_p/libnghttp2-dev_1.64.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpipeline1 armel 1.5.8-1 [34.7 kB]
Fetched 34.7 kB in 0s (1842 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyk5nlufo/libpipeline1_1.5.8-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libuchardet0 armel 0.0.8-1+b2 [65.8 kB]
Fetched 65.8 kB in 0s (3948 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyuyddq3p/libuchardet0_0.0.8-1+b2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Fetched 326 kB in 0s (17.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ufaibby/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-dev armel 3.13.2-1 [26.1 kB]
Fetched 26.1 kB in 0s (1558 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpog0bzis_/python3-dev_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel media-types all 12.0.0 [28.9 kB]
Fetched 28.9 kB in 0s (1791 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeavifyjm/media-types_12.0.0_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libbrotli-dev armel 1.1.0-2+b6 [301 kB]
Fetched 301 kB in 0s (16.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90s2_uyr/libbrotli-dev_1.1.0-2+b6_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel patch armel 2.7.6-7 [125 kB]
Fetched 125 kB in 0s (7086 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0b80x610/patch_2.7.6-7_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libmount1 armel 2.40.4-5 [179 kB]
Fetched 179 kB in 0s (10.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9yib0hwd/libmount1_2.40.4-5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel pkgconf armel 1.8.1-4 [26.1 kB]
Fetched 26.1 kB in 0s (1586 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjb84v5pf/pkgconf_1.8.1-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libmagic1t64 armel 1:5.45-3+b1 [99.1 kB]
Fetched 99.1 kB in 0s (5550 kB/s)
dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3+b1_armel.deb' to '/srv/rebuilderd/tmp/tmptnoulij3/libmagic1t64_5.45-3+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpam-modules armel 1.7.0-3 [160 kB]
Fetched 160 kB in 0s (13.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr0fisbja/libpam-modules_1.7.0-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libctf-nobfd0 armel 2.44-2 [131 kB]
Fetched 131 kB in 0s (7496 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvw4jnakj/libctf-nobfd0_2.44-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel coreutils armel 9.5-1 [2762 kB]
Fetched 2762 kB in 0s (69.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwy6_g_9o/coreutils_9.5-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libhts-dev armel 1.21+ds-1 [1653 kB]
Fetched 1653 kB in 0s (76.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpni7fmn1p/libhts-dev_1.21+ds-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libkdb5-10t64 armel 1.21.3-4 [37.4 kB]
Fetched 37.4 kB in 0s (2144 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpazohchav/libkdb5-10t64_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpython3.13 armel 3.13.2-1 [1814 kB]
Fetched 1814 kB in 0s (56.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7q7dhoz4/libpython3.13_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel openssl-provider-legacy armel 3.4.1-1 [293 kB]
Fetched 293 kB in 0s (14.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsvq73mb/openssl-provider-legacy_3.4.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libbinutils armel 2.44-2 [341 kB]
Fetched 341 kB in 0s (19.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpto_6i3cl/libbinutils_2.44-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-pluggy all 1.5.0-1 [26.9 kB]
Fetched 26.9 kB in 0s (1542 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13ur9op2/python3-pluggy_1.5.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel g++-14 armel 14.2.0-17 [22.1 kB]
Fetched 22.1 kB in 0s (1329 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn7h6hc58/g++-14_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libsystemd0 armel 257.3-1 [409 kB]
Fetched 409 kB in 0s (21.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplzhte6jr/libsystemd0_257.3-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel dwz armel 0.15-1+b3 [104 kB]
Fetched 104 kB in 0s (5614 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgm3sl1am/dwz_0.15-1+b3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Fetched 12.0 kB in 0s (680 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxxuvgxlp/python3-jaraco.functools_4.1.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libdebconfclient0 armel 0.277 [10.1 kB]
Fetched 10.1 kB in 0s (627 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpluv_daxq/libdebconfclient0_0.277_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libldap-dev armel 2.6.9+dfsg-1 [285 kB]
Fetched 285 kB in 0s (14.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplszjgeif/libldap-dev_2.6.9+dfsg-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libmagic-mgc armel 1:5.45-3+b1 [314 kB]
Fetched 314 kB in 0s (16.8 MB/s)
dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3+b1_armel.deb' to '/srv/rebuilderd/tmp/tmptaom8om_/libmagic-mgc_5.45-3+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Fetched 8620 B in 0s (543 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpypa6ryx0/dh-strip-nondeterminism_1.14.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel cpp-14 armel 14.2.0-17 [1276 B]
Fetched 1276 B in 0s (80.2 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp18pg5c_r/cpp-14_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libmd0 armel 1.1.0-2+b1 [32.5 kB]
Fetched 32.5 kB in 0s (1958 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5t5lhcmf/libmd0_1.1.0-2+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel m4 armel 1.4.19-5 [272 kB]
Fetched 272 kB in 0s (14.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9or_v262/m4_1.4.19-5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libc6 armel 2.40-7 [2239 kB]
Fetched 2239 kB in 0s (62.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4gv2u44t/libc6_2.40-7_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libexpat1 armel 2.6.4-1 [83.8 kB]
Fetched 83.8 kB in 0s (6772 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz7bn7l3o/libexpat1_2.6.4-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel gcc-14-arm-linux-gnueabi armel 14.2.0-17 [16.1 MB]
Fetched 16.1 MB in 0s (141 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8wzl0gp2/gcc-14-arm-linux-gnueabi_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libreadline8t64 armel 8.2-6 [145 kB]
Fetched 145 kB in 0s (8302 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph0uemvsl/libreadline8t64_8.2-6_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel krb5-multidev armel 1.21.3-4 [126 kB]
Fetched 126 kB in 0s (7505 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp355ejnlr/krb5-multidev_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgcc-s1 armel 14.2.0-17 [38.8 kB]
Fetched 38.8 kB in 0s (2403 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx_ymw4y8/libgcc-s1_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libevent-2.1-7t64 armel 2.1.12-stable-10+b1 [165 kB]
Fetched 165 kB in 0s (9504 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzkf97zuc/libevent-2.1-7t64_2.1.12-stable-10+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libbrotli1 armel 1.1.0-2+b6 [290 kB]
Fetched 290 kB in 0s (16.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz6v0c6a1/libbrotli1_1.1.0-2+b6_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpkgconf3 armel 1.8.1-4 [31.5 kB]
Fetched 31.5 kB in 0s (1909 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppdfq19mb/libpkgconf3_1.8.1-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel bash armel 5.2.37-1.1 [1423 kB]
Fetched 1423 kB in 0s (34.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcszangm0/bash_5.2.37-1.1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel base-files armel 13.6 [72.9 kB]
Fetched 72.9 kB in 0s (4383 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwinu23wy/base-files_13.6_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libc-bin armel 2.40-7 [514 kB]
Fetched 514 kB in 0s (25.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5g6i1qs/libc-bin_2.40-7_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgnutls-openssl27t64 armel 3.8.9-2 [447 kB]
Fetched 447 kB in 0s (22.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqr8e1bh/libgnutls-openssl27t64_3.8.9-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libcom-err2 armel 1.47.2-1 [23.5 kB]
Fetched 23.5 kB in 0s (2314 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphvhovuur/libcom-err2_1.47.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpython3.13-stdlib armel 3.13.2-1 [1841 kB]
Fetched 1841 kB in 0s (54.6 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmcqmxew9/libpython3.13-stdlib_3.13.2-1_armel.deb'
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Downloading dependency 132 of 250: autoconf:armel=2.72-3Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel autoconf all 2.72-3 [493 kB]
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpcre2-8-0 armel 10.45-1 [180 kB]
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libisl23 armel 0.27-1 [497 kB]
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-zipp all 3.21.0-1 [10.6 kB]
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel sysvinit-utils armel 3.14-3 [32.7 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7vhfd4n1/sysvinit-utils_3.14-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel zlib1g-dev armel 1:1.3.dfsg+really1.3.1-1+b1 [905 kB]
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dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armel.deb' to '/srv/rebuilderd/tmp/tmpdcao59dz/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel cpp-14-arm-linux-gnueabi armel 14.2.0-17 [8533 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphz7isb2p/cpp-14-arm-linux-gnueabi_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libicu72 armel 72.1-6 [9056 kB]
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-jaraco.text all 4.0.0-1 [11.4 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5osg9vw9/python3-jaraco.text_4.0.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel rpcsvc-proto armel 1.4.3-1 [58.4 kB]
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel cpp-arm-linux-gnueabi armel 4:14.2.0-1 [4832 B]
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dpkg-name: info: moved 'cpp-arm-linux-gnueabi_4%3a14.2.0-1_armel.deb' to '/srv/rebuilderd/tmp/tmp86tgq8kw/cpp-arm-linux-gnueabi_14.2.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libhts3t64 armel 1.21+ds-1 [404 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppubft6gq/libhts3t64_1.21+ds-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel gcc-arm-linux-gnueabi armel 4:14.2.0-1 [1436 B]
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dpkg-name: info: moved 'gcc-arm-linux-gnueabi_4%3a14.2.0-1_armel.deb' to '/srv/rebuilderd/tmp/tmpohnebbb7/gcc-arm-linux-gnueabi_14.2.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libk5crypto3 armel 1.21.3-4 [75.6 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprm9uuwm1/libk5crypto3_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel cpp armel 4:14.2.0-1 [1568 B]
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dpkg-name: info: moved 'cpp_4%3a14.2.0-1_armel.deb' to '/srv/rebuilderd/tmp/tmp78ax_ng4/cpp_14.2.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgmpxx4ldbl armel 2:6.3.0+dfsg-3 [328 kB]
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dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-3_armel.deb' to '/srv/rebuilderd/tmp/tmp1nofrw1s/libgmpxx4ldbl_6.3.0+dfsg-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel xz-utils armel 5.6.3-1+b1 [541 kB]
Fetched 541 kB in 0s (25.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9rzx_ylq/xz-utils_5.6.3-1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libbz2-dev armel 1.0.8-6 [28.4 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6bqnkrdg/libbz2-dev_1.0.8-6_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-inflect all 7.3.1-2 [32.4 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpai043xta/python3-inflect_7.3.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel gzip armel 1.13-1 [135 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3dg1pv9g/gzip_1.13-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libssh2-1-dev armel 1.11.1-1 [377 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmti8cyu2/libssh2-1-dev_1.11.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgmp10 armel 2:6.3.0+dfsg-3 [508 kB]
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dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_armel.deb' to '/srv/rebuilderd/tmp/tmpp36ordxr/libgmp10_6.3.0+dfsg-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-pytest all 8.3.4-1 [250 kB]
Fetched 250 kB in 0s (12.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2zhx95k9/python3-pytest_8.3.4-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel debianutils armel 5.21 [90.7 kB]
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel comerr-dev armel 2.1-1.47.2-1 [55.3 kB]
Fetched 55.3 kB in 0s (3422 kB/s)
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libkadm5srv-mit12 armel 1.21.3-4 [47.2 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7qlohy4d/libkadm5srv-mit12_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-iniconfig all 1.1.1-2 [6396 B]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbo8m9dzd/python3-iniconfig_1.1.1-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libaudit-common all 1:4.0.2-2 [12.7 kB]
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dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmp4ggolkb3/libaudit-common_4.0.2-2_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libnettle8t64 armel 3.10.1-1 [311 kB]
Fetched 311 kB in 0s (17.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm0hrkdvp/libnettle8t64_3.10.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel sed armel 4.9-2 [321 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpph8jpbx_/sed_4.9-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libp11-kit-dev armel 0.25.5-3 [208 kB]
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Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libssl3t64 armel 3.4.1-1 [1847 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppiwpsejj/libssl3t64_3.4.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libnghttp2-14 armel 1.64.0-1 [62.8 kB]
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dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ewup8gz/libnghttp2-14_1.64.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel zlib1g armel 1:1.3.dfsg+really1.3.1-1+b1 [75.3 kB]
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dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_armel.deb' to '/srv/rebuilderd/tmp/tmpkisw4yz4/zlib1g_1.3.dfsg+really1.3.1-1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libarchive-zip-perl all 1.68-1 [104 kB]
Fetched 104 kB in 0s (0 B/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_4g2mub/libarchive-zip-perl_1.68-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libacl1 armel 2.3.2-2+b1 [30.1 kB]
Fetched 30.1 kB in 0s (1734 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpffvte5jj/libacl1_2.3.2-2+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2+b5 [53.4 kB]
Fetched 53.4 kB in 0s (4922 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp72v2z_hi/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libtasn1-6 armel 4.20.0-2 [43.8 kB]
Fetched 43.8 kB in 0s (2574 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3nmx_2vx/libtasn1-6_4.20.0-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libngtcp2-dev armel 1.9.1-1 [166 kB]
Fetched 166 kB in 0s (9511 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5cocuvje/libngtcp2-dev_1.9.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel binutils-arm-linux-gnueabi armel 2.44-2 [833 kB]
Fetched 833 kB in 0s (34.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi69iqagb/binutils-arm-linux-gnueabi_2.44-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libzstd-dev armel 1.5.6+dfsg-2 [330 kB]
Fetched 330 kB in 0s (18.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0wbwdf8w/libzstd-dev_1.5.6+dfsg-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel mawk armel 1.3.4.20250131-1 [131 kB]
Fetched 131 kB in 0s (6118 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpso15orpt/mawk_1.3.4.20250131-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgdbm-compat4t64 armel 1.24-2 [50.0 kB]
Fetched 50.0 kB in 0s (3050 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl72c2orl/libgdbm-compat4t64_1.24-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel autotools-dev all 20220109.1 [51.6 kB]
Fetched 51.6 kB in 0s (2852 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbs5arzfi/autotools-dev_20220109.1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libatomic1 armel 14.2.0-17 [9572 B]
Fetched 9572 B in 0s (566 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzvuo14rt/libatomic1_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libperl5.40 armel 5.40.1-2 [3581 kB]
Fetched 3581 kB in 0s (71.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9oudh5gs/libperl5.40_5.40.1-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel init-system-helpers all 1.68 [38.7 kB]
Fetched 38.7 kB in 0s (2310 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpns3rupzg/init-system-helpers_1.68_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpam0g armel 1.7.0-3 [65.5 kB]
Fetched 65.5 kB in 0s (4573 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpno50cptt/libpam0g_1.7.0-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel gettext-base armel 0.23.1-1 [238 kB]
Fetched 238 kB in 0s (16.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_3xf2hb/gettext-base_0.23.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel file armel 1:5.45-3+b1 [42.5 kB]
Fetched 42.5 kB in 0s (2376 kB/s)
dpkg-name: info: moved 'file_1%3a5.45-3+b1_armel.deb' to '/srv/rebuilderd/tmp/tmp92vdi_bt/file_5.45-3+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel hostname armel 3.25 [10.1 kB]
Fetched 10.1 kB in 0s (641 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmporqmbcrb/hostname_3.25_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpython3-stdlib armel 3.13.2-1 [10.0 kB]
Fetched 10.0 kB in 0s (629 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgodsht22/libpython3-stdlib_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libcrypt-dev armel 1:4.4.38-1 [127 kB]
Fetched 127 kB in 0s (7404 kB/s)
dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_armel.deb' to '/srv/rebuilderd/tmp/tmp91ewck9v/libcrypt-dev_4.4.38-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libsasl2-modules-db armel 2.1.28+dfsg1-8+b1 [18.7 kB]
Fetched 18.7 kB in 0s (1057 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2dfyo6v2/libsasl2-modules-db_2.1.28+dfsg1-8+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-pkg-resources all 75.8.0-1 [222 kB]
Fetched 222 kB in 0s (12.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgxyj_y1z/python3-pkg-resources_75.8.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgdbm6t64 armel 1.24-2 [70.9 kB]
Fetched 70.9 kB in 0s (4094 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2skndi2x/libgdbm6t64_1.24-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel bsdutils armel 1:2.40.4-5 [97.9 kB]
Fetched 97.9 kB in 0s (0 B/s)
dpkg-name: info: moved 'bsdutils_1%3a2.40.4-5_armel.deb' to '/srv/rebuilderd/tmp/tmp4f9u9owc/bsdutils_2.40.4-5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-typeguard all 4.4.2-1 [37.3 kB]
Fetched 37.3 kB in 0s (2596 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdfx2n68r/python3-typeguard_4.4.2-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpam-modules-bin armel 1.7.0-3 [44.5 kB]
Fetched 44.5 kB in 0s (2696 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxa8dlq84/libpam-modules-bin_1.7.0-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libmpc3 armel 1.3.1-1+b3 [43.0 kB]
Fetched 43.0 kB in 0s (2603 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxfh0p9wj/libmpc3_1.3.1-1+b3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libngtcp2-crypto-gnutls-dev armel 1.9.1-1 [21.3 kB]
Fetched 21.3 kB in 0s (1304 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptcni9m0j/libngtcp2-crypto-gnutls-dev_1.9.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel dh-python all 6.20250108 [113 kB]
Fetched 113 kB in 0s (6791 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgu22lerc/dh-python_6.20250108_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel automake all 1:1.17-3 [862 kB]
Fetched 862 kB in 0s (27.8 MB/s)
dpkg-name: info: moved 'automake_1%3a1.17-3_all.deb' to '/srv/rebuilderd/tmp/tmp02m20112/automake_1.17-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libssh2-1t64 armel 1.11.1-1 [226 kB]
Fetched 226 kB in 0s (10.7 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_f5bmu2s/libssh2-1t64_1.11.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel perl-base armel 5.40.1-2 [1489 kB]
Fetched 1489 kB in 0s (52.0 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq8t8bdxi/perl-base_5.40.1-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libdb5.3t64 armel 5.3.28+dfsg2-9 [584 kB]
Fetched 584 kB in 0s (26.8 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6_5jrd5u/libdb5.3t64_5.3.28+dfsg2-9_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgnutls30t64 armel 3.8.9-2 [1369 kB]
Fetched 1369 kB in 0s (48.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe634pq6n/libgnutls30t64_3.8.9-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-setuptools all 75.8.0-1 [724 kB]
Fetched 724 kB in 0s (32.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq6zzttzh/python3-setuptools_75.8.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel readline-common all 8.2-6 [69.4 kB]
Fetched 69.4 kB in 0s (4079 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0n112e4/readline-common_8.2-6_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel make armel 4.4.1-1 [451 kB]
Fetched 451 kB in 0s (23.5 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_a601ux8/make_4.4.1-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel gcc-14-base armel 14.2.0-17 [49.1 kB]
Fetched 49.1 kB in 0s (2941 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk3nzct65/gcc-14-base_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-autocommand all 2.2.2-3 [13.6 kB]
Fetched 13.6 kB in 0s (842 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6_k767tw/python3-autocommand_2.2.2-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3.13-dev armel 3.13.2-1 [499 kB]
Fetched 499 kB in 0s (24.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn92igbba/python3.13-dev_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel base-passwd armel 3.6.6 [52.1 kB]
Fetched 52.1 kB in 0s (0 B/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2kowv6m8/base-passwd_3.6.6_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel util-linux armel 2.40.4-5 [1099 kB]
Fetched 1099 kB in 0s (77.4 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxdcke2o/util-linux_2.40.4-5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libaudit1 armel 1:4.0.2-2+b1 [49.4 kB]
Fetched 49.4 kB in 0s (3094 kB/s)
dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b1_armel.deb' to '/srv/rebuilderd/tmp/tmpjsw0c4zt/libaudit1_4.0.2-2+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgmp-dev armel 2:6.3.0+dfsg-3 [590 kB]
Fetched 590 kB in 0s (28.0 MB/s)
dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-3_armel.deb' to '/srv/rebuilderd/tmp/tmp511abb1b/libgmp-dev_6.3.0+dfsg-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libxml2 armel 2.12.7+dfsg+really2.9.14-0.2+b1 [587 kB]
Fetched 587 kB in 0s (27.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphc76abpb/libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libkadm5clnt-mit12 armel 1.21.3-4 [37.5 kB]
Fetched 37.5 kB in 0s (2162 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpurfrw1si/libkadm5clnt-mit12_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel g++-14-arm-linux-gnueabi armel 14.2.0-17 [9296 kB]
Fetched 9296 kB in 0s (109 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpekn7ttx7/g++-14-arm-linux-gnueabi_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libdeflate0 armel 1.23-1+b1 [33.9 kB]
Fetched 33.9 kB in 0s (2078 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkundgds1/libdeflate0_1.23-1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel pkgconf-bin armel 1.8.1-4 [29.3 kB]
Fetched 29.3 kB in 0s (0 B/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9hehyd_/pkgconf-bin_1.8.1-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel bsdextrautils armel 2.40.4-5 [84.9 kB]
Fetched 84.9 kB in 0s (5219 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbjfhaseu/bsdextrautils_2.40.4-5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-minimal armel 3.13.2-1 [27.1 kB]
Fetched 27.1 kB in 0s (1739 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps_tj3els/python3-minimal_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel dpkg-dev all 1.22.15 [1337 kB]
Fetched 1337 kB in 0s (49.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_1okdo3/dpkg-dev_1.22.15_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libjs-sphinxdoc all 8.1.3-5 [30.5 kB]
Fetched 30.5 kB in 0s (1797 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx1xfx3ik/libjs-sphinxdoc_8.1.3-5_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libattr1 armel 1:2.5.2-3 [22.0 kB]
Fetched 22.0 kB in 0s (1374 kB/s)
dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_armel.deb' to '/srv/rebuilderd/tmp/tmpg2l9fuba/libattr1_2.5.2-3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3-jaraco.context all 6.0.0-1 [7984 B]
Fetched 7984 B in 0s (501 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6amikd1l/python3-jaraco.context_6.0.0-1_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel librtmp-dev armel 2.4+20151223.gitfa8646d.1-2+b5 [63.8 kB]
Fetched 63.8 kB in 0s (3762 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmi5nakxf/librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libpam-runtime all 1.7.0-3 [248 kB]
Fetched 248 kB in 0s (13.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9teenif0/libpam-runtime_1.7.0-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libbz2-1.0 armel 1.0.8-6 [36.3 kB]
Fetched 36.3 kB in 0s (2055 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8jff_cx6/libbz2-1.0_1.0.8-6_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libtasn1-6-dev armel 4.20.0-2 [93.4 kB]
Fetched 93.4 kB in 0s (5063 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpib_14oon/libtasn1-6-dev_4.20.0-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libldap2 armel 2.6.9+dfsg-1 [165 kB]
Fetched 165 kB in 0s (9475 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq_71a2zl/libldap2_2.6.9+dfsg-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libsasl2-2 armel 2.1.28+dfsg1-8+b1 [50.3 kB]
Fetched 50.3 kB in 0s (2878 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpurkmd7qd/libsasl2-2_2.1.28+dfsg1-8+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libkrb5-3 armel 1.21.3-4 [283 kB]
Fetched 283 kB in 0s (14.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4yu6dm91/libkrb5-3_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libidn2-dev armel 2.3.7-2+b1 [119 kB]
Fetched 119 kB in 0s (6975 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy24bwdpb/libidn2-dev_2.3.7-2+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Fetched 116 kB in 0s (6692 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjk3aec0r/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel python3.13-minimal armel 3.13.2-1 [1807 kB]
Fetched 1807 kB in 0s (114 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprmwi51pv/python3.13-minimal_3.13.2-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel g++-arm-linux-gnueabi armel 4:14.2.0-1 [1196 B]
Fetched 1196 B in 0s (76.0 kB/s)
dpkg-name: info: moved 'g++-arm-linux-gnueabi_4%3a14.2.0-1_armel.deb' to '/srv/rebuilderd/tmp/tmpmv3fsn_z/g++-arm-linux-gnueabi_14.2.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libjansson4 armel 2.14-2+b3 [35.8 kB]
Fetched 35.8 kB in 0s (2196 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplya8_je6/libjansson4_2.14-2+b3_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel diffutils armel 1:3.10-2 [370 kB]
Fetched 370 kB in 0s (19.4 MB/s)
dpkg-name: info: moved 'diffutils_1%3a3.10-2_armel.deb' to '/srv/rebuilderd/tmp/tmp2rf66ubp/diffutils_3.10-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libc6-dev armel 2.40-7 [1335 kB]
Fetched 1335 kB in 0s (49.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5257flyi/libc6-dev_2.40-7_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libkrb5-dev armel 1.21.3-4 [15.9 kB]
Fetched 15.9 kB in 0s (977 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmparggcrqm/libkrb5-dev_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libtool all 2.5.4-3 [539 kB]
Fetched 539 kB in 0s (25.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9rj8ci7g/libtool_2.5.4-3_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libubsan1 armel 14.2.0-17 [1037 kB]
Fetched 1037 kB in 0s (42.2 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4b84b3ij/libubsan1_14.2.0-17_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libgssrpc4t64 armel 1.21.3-4 [52.6 kB]
Fetched 52.6 kB in 0s (2830 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5bynxrc6/libgssrpc4t64_1.21.3-4_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel bzip2 armel 1.0.8-6 [40.7 kB]
Fetched 40.7 kB in 0s (2486 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsoekqva6/bzip2_1.0.8-6_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libdpkg-perl all 1.22.15 [648 kB]
Fetched 648 kB in 0s (28.3 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp508ob_oy/libdpkg-perl_1.22.15_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libudev1 armel 257.3-1 [139 kB]
Fetched 139 kB in 0s (3217 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_vuhp6ru/libudev1_257.3-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel binutils armel 2.44-2 [69.0 kB]
Fetched 69.0 kB in 0s (4124 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsf0lqy1j/binutils_2.44-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel perl armel 5.40.1-2 [267 kB]
Fetched 267 kB in 0s (13.9 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvsvsi5dy/perl_5.40.1-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel netbase all 6.4 [12.8 kB]
Fetched 12.8 kB in 0s (528 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr5vx8xmh/netbase_6.4_all.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libexpat1-dev armel 2.6.4-1 [138 kB]
Fetched 138 kB in 0s (8214 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph2rus6lq/libexpat1-dev_2.6.4-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libctf0 armel 2.44-2 [63.1 kB]
Fetched 63.1 kB in 0s (3804 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp73uvoh9w/libctf0_2.44-2_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libsmartcols1 armel 2.40.4-5 [125 kB]
Fetched 125 kB in 0s (7171 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5bl5a3gw/libsmartcols1_2.40.4-5_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel liblzma-dev armel 5.6.3-1+b1 [305 kB]
Fetched 305 kB in 0s (16.1 MB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp578a5sad/liblzma-dev_5.6.3-1+b1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel gcc armel 4:14.2.0-1 [5136 B]
Fetched 5136 B in 0s (303 kB/s)
dpkg-name: info: moved 'gcc_4%3a14.2.0-1_armel.deb' to '/srv/rebuilderd/tmp/tmplrqb39lq/gcc_14.2.0-1_armel.deb'
Get:1 http://snapshot.debian.org/archive/debian/20250227T025207Z sid/main armel libnghttp3-9 armel 1.6.0-2 [57.1 kB]
Fetched 57.1 kB in 0s (3507 kB/s)
dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplc15zbl2/libnghttp3-9_1.6.0-2_armel.deb'
dpkg-buildpackage: info: source package debootsnap-dummy
dpkg-buildpackage: info: source version 1.0
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator <rebuilderd@codethink05-arm64.debian.net>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/debootsnap-dummy/
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'.
 dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo
 dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)

The package has been created.
Attention, the package has been created in the /srv/rebuilderd/tmp/tmpwtdbbjki/cache directory,
not in ".." as indicated by the message above!
I: automatically chosen mode: unshare
I: armel is different from arm64 but can be executed natively
I: using /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR as tempdir
I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR
127.0.0.1 - - [24/Jul/2025 05:16:57] code 404, message File not found
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./InRelease HTTP/1.1" 404 -
Ign:1 http://localhost:38895 ./ InRelease
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./Release HTTP/1.1" 200 -
Get:2 http://localhost:38895 ./ Release [462 B]
127.0.0.1 - - [24/Jul/2025 05:16:57] code 404, message File not found
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./Release.gpg HTTP/1.1" 404 -
Ign:3 http://localhost:38895 ./ Release.gpg
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./Packages HTTP/1.1" 200 -
Get:4 http://localhost:38895 ./ Packages [305 kB]
Fetched 305 kB in 0s (8715 kB/s)
Reading package lists...
usr-is-merged found but not real -- not running merged-usr setup hook
I: skipping apt-get update because it was already run
I: downloading packages with apt...
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./gcc-14-base_14.2.0-17_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libc6_2.40-7_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libgcc-s1_14.2.0-17_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./mawk_1.3.4.20250131-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./base-files_13.6_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libtinfo6_6.5%2b20250216-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./debianutils_5.21_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./bash_5.2.37-1.1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libcap2_2.73-4_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libsystemd0_257.3-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./bsdutils_2.40.4-5_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libacl1_2.3.2-2%2bb1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libattr1_2.5.2-3_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libgmp10_6.3.0%2bdfsg-3_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libpcre2-8-0_10.45-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libselinux1_3.8-4_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libatomic1_14.2.0-17_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libzstd1_1.5.6%2bdfsg-2_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:57] "GET /./libssl3t64_3.4.1-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./openssl-provider-legacy_3.4.1-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./coreutils_9.5-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./dash_0.5.12-12_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./diffutils_3.10-2_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libbz2-1.0_1.0.8-6_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./liblzma5_5.6.3-1%2bb1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libmd0_1.1.0-2%2bb1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./tar_1.35%2bdfsg-3.1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./dpkg_1.22.15_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./findutils_4.10.0-3_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./grep_3.11-4_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./gzip_1.13-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./hostname_3.25_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./ncurses-bin_6.5%2b20250216-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libcrypt1_4.4.38-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./perl-base_5.40.1-2_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./sed_4.9-2_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libaudit-common_4.0.2-2_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libcap-ng0_0.8.5-4_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libaudit1_4.0.2-2%2bb1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./debconf_1.5.89_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libpam0g_1.7.0-3_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libpam-modules-bin_1.7.0-3_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libpam-modules_1.7.0-3_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libpam-runtime_1.7.0-3_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libblkid1_2.40.4-5_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libmount1_2.40.4-5_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libsmartcols1_2.40.4-5_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libudev1_257.3-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libuuid1_2.40.4-5_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./util-linux_2.40.4-5_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libdebconfclient0_0.277_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./base-passwd_3.6.6_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./libc-bin_2.40-7_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./ncurses-base_6.5%2b20250216-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:16:58] "GET /./sysvinit-utils_3.14-3_armel.deb HTTP/1.1" 200 -
I: extracting archives...
I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR
127.0.0.1 - - [24/Jul/2025 05:17:01] code 404, message File not found
127.0.0.1 - - [24/Jul/2025 05:17:01] "GET /./InRelease HTTP/1.1" 404 -
Ign:1 http://localhost:38895 ./ InRelease
127.0.0.1 - - [24/Jul/2025 05:17:01] "GET /./Release HTTP/1.1" 304 -
Hit:2 http://localhost:38895 ./ Release
127.0.0.1 - - [24/Jul/2025 05:17:01] code 404, message File not found
127.0.0.1 - - [24/Jul/2025 05:17:01] "GET /./Release.gpg HTTP/1.1" 404 -
Ign:3 http://localhost:38895 ./ Release.gpg
Reading package lists...
usr-is-merged found but not real -- not running merged-usr extract hook
I: installing essential packages...
I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR
usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook
I: installing remaining packages inside the chroot...
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libpython3.13-minimal_3.13.2-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libexpat1_2.6.4-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./python3.13-minimal_3.13.2-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./python3-minimal_3.13.2-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./media-types_12.0.0_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./netbase_6.4_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./tzdata_2025a-2_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libffi8_3.4.7-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libncursesw6_6.5%2b20250216-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./readline-common_8.2-6_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libreadline8t64_8.2-6_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libsqlite3-0_3.46.1-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libpython3.13-stdlib_3.13.2-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./python3.13_3.13.2-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libpython3-stdlib_3.13.2-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./python3_3.13.2-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./sensible-utils_0.0.24_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libstdc%2b%2b6_14.2.0-17_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libuchardet0_0.0.8-1%2bb2_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./groff-base_1.23.0-7_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./bsdextrautils_2.40.4-5_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libgdbm6t64_1.24-2_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libpipeline1_1.5.8-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libseccomp2_2.5.5-2_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./man-db_2.13.0-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./bzip2_1.0.8-6_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libmagic-mgc_5.45-3%2bb1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./libmagic1t64_5.45-3%2bb1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:09] "GET /./file_5.45-3%2bb1_armel.deb HTTP/1.1" 200 -
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127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./liblzma-dev_5.6.3-1%2bb1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./libhts-dev_1.21%2bds-1_armel.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-pluggy_1.5.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-jaraco.functools_4.1.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-typing-extensions_4.12.2-2_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-zipp_3.21.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-autocommand_2.2.2-3_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-jaraco.context_6.0.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-typeguard_4.4.2-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-inflect_7.3.1-2_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-jaraco.text_4.0.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-iniconfig_1.1.1-2_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-pytest_8.3.4-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-pkg-resources_75.8.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./python3-setuptools_75.8.0-1_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./dh-python_6.20250108_all.deb HTTP/1.1" 200 -
127.0.0.1 - - [24/Jul/2025 05:17:10] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 -
I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpwtdbbjki/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR
Reading package lists...
Building dependency tree...
Reading state information...
libcc1-0 is already the newest version (14.2.0-17).
libcc1-0 set to manually installed.
dpkg is already the newest version (1.22.15).
python3 is already the newest version (3.13.2-1).
python3 set to manually installed.
libcurl4-gnutls-dev is already the newest version (8.12.1-3).
libcurl4-gnutls-dev set to manually installed.
libstdc++6 is already the newest version (14.2.0-17).
libstdc++6 set to manually installed.
debconf is already the newest version (1.5.89).
libselinux1 is already the newest version (3.8-4).
libffi8 is already the newest version (3.4.7-1).
libffi8 set to manually installed.
findutils is already the newest version (4.10.0-3).
libssl-dev is already the newest version (3.4.1-1).
libssl-dev set to manually installed.
libunistring5 is already the newest version (1.3-1).
libunistring5 set to manually installed.
libunbound8 is already the newest version (1.22.0-1+b1).
libunbound8 set to manually installed.
libpython3.13-minimal is already the newest version (3.13.2-1).
libpython3.13-minimal set to manually installed.
man-db is already the newest version (2.13.0-1).
man-db set to manually installed.
sensible-utils is already the newest version (0.0.24).
sensible-utils set to manually installed.
libdebhelper-perl is already the newest version (13.24.1).
libdebhelper-perl set to manually installed.
liblzma5 is already the newest version (5.6.3-1+b1).
libdeflate-dev is already the newest version (1.23-1+b1).
libdeflate-dev set to manually installed.
libgcc-14-dev is already the newest version (14.2.0-17).
libgcc-14-dev set to manually installed.
libhogweed6t64 is already the newest version (3.10.1-1).
libhogweed6t64 set to manually installed.
libtinfo6 is already the newest version (6.5+20250216-1).
tar is already the newest version (1.35+dfsg-3.1).
build-essential is already the newest version (12.12).
build-essential set to manually installed.
intltool-debian is already the newest version (0.35.0+20060710.6).
intltool-debian set to manually installed.
libcap2 is already the newest version (1:2.73-4).
libpython3-dev is already the newest version (3.13.2-1).
libpython3-dev set to manually installed.
python3-packaging is already the newest version (24.2-1).
python3-packaging set to manually installed.
libngtcp2-16 is already the newest version (1.9.1-1).
libngtcp2-16 set to manually installed.
tzdata is already the newest version (2025a-2).
tzdata set to manually installed.
libhtscodecs2 is already the newest version (1.6.1-2).
libhtscodecs2 set to manually installed.
libkeyutils1 is already the newest version (1.6.3-4).
libkeyutils1 set to manually installed.
binutils-common is already the newest version (2.44-2).
binutils-common set to manually installed.
ncurses-bin is already the newest version (6.5+20250216-1).
libgnutls-dane0t64 is already the newest version (3.8.9-2).
libgnutls-dane0t64 set to manually installed.
libgomp1 is already the newest version (14.2.0-17).
libgomp1 set to manually installed.
bcftools is already the newest version (1.21-1).
bcftools set to manually installed.
libseccomp2 is already the newest version (2.5.5-2).
libseccomp2 set to manually installed.
libuuid1 is already the newest version (2.40.4-5).
libstdc++-14-dev is already the newest version (14.2.0-17).
libstdc++-14-dev set to manually installed.
libzstd1 is already the newest version (1.5.6+dfsg-2).
libasan8 is already the newest version (14.2.0-17).
libasan8 set to manually installed.
gettext is already the newest version (0.23.1-1).
gettext set to manually installed.
libpsl5t64 is already the newest version (0.21.2-1.1+b1).
libpsl5t64 set to manually installed.
linux-libc-dev is already the newest version (6.12.16-1).
linux-libc-dev set to manually installed.
libngtcp2-crypto-gnutls8 is already the newest version (1.9.1-1).
libngtcp2-crypto-gnutls8 set to manually installed.
libpython3.13-dev is already the newest version (3.13.2-1).
libpython3.13-dev set to manually installed.
autopoint is already the newest version (0.23.1-1).
autopoint set to manually installed.
libcrypt1 is already the newest version (1:4.4.38-1).
libsframe1 is already the newest version (2.44-2).
libsframe1 set to manually installed.
po-debconf is already the newest version (1.0.21+nmu1).
po-debconf set to manually installed.
libgnutls28-dev is already the newest version (3.8.9-2).
libgnutls28-dev set to manually installed.
debhelper is already the newest version (13.24.1).
debhelper set to manually installed.
libsqlite3-0 is already the newest version (3.46.1-1).
libsqlite3-0 set to manually installed.
libncurses6 is already the newest version (6.5+20250216-1).
libncurses6 set to manually installed.
nettle-dev is already the newest version (3.10.1-1).
nettle-dev set to manually installed.
libblkid1 is already the newest version (2.40.4-5).
libc-dev-bin is already the newest version (2.40-7).
libc-dev-bin set to manually installed.
libcap-ng0 is already the newest version (0.8.5-4).
libpsl-dev is already the newest version (0.21.2-1.1+b1).
libpsl-dev set to manually installed.
ncurses-base is already the newest version (6.5+20250216-1).
libnghttp3-dev is already the newest version (1.6.0-2).
libnghttp3-dev set to manually installed.
python3.13 is already the newest version (3.13.2-1).
python3.13 set to manually installed.
g++ is already the newest version (4:14.2.0-1).
g++ set to manually installed.
libfile-stripnondeterminism-perl is already the newest version (1.14.1-2).
libfile-stripnondeterminism-perl set to manually installed.
tabix is already the newest version (1.21+ds-1).
tabix set to manually installed.
dh-autoreconf is already the newest version (20).
dh-autoreconf set to manually installed.
libp11-kit0 is already the newest version (0.25.5-3).
libp11-kit0 set to manually installed.
perl-modules-5.40 is already the newest version (5.40.1-2).
perl-modules-5.40 set to manually installed.
libelf1t64 is already the newest version (0.192-4).
libelf1t64 set to manually installed.
python3-more-itertools is already the newest version (10.6.0-1).
python3-more-itertools set to manually installed.
samtools is already the newest version (1.21-1).
samtools set to manually installed.
libkrb5support0 is already the newest version (1.21.3-4).
libkrb5support0 set to manually installed.
libpython3-all-dev is already the newest version (3.13.2-1).
libpython3-all-dev set to manually installed.
groff-base is already the newest version (1.23.0-7).
groff-base set to manually installed.
python3-all-dev is already the newest version (3.13.2-1).
python3-all-dev set to manually installed.
libidn2-0 is already the newest version (2.3.7-2+b1).
libidn2-0 set to manually installed.
libgssapi-krb5-2 is already the newest version (1.21.3-4).
libgssapi-krb5-2 set to manually installed.
libcurl3t64-gnutls is already the newest version (8.12.1-3).
libcurl3t64-gnutls set to manually installed.
python3-all is already the newest version (3.13.2-1).
python3-all set to manually installed.
grep is already the newest version (3.11-4).
libmpfr6 is already the newest version (4.2.1-1+b2).
libmpfr6 set to manually installed.
dash is already the newest version (0.5.12-12).
libnghttp2-dev is already the newest version (1.64.0-1).
libnghttp2-dev set to manually installed.
libpipeline1 is already the newest version (1.5.8-1).
libpipeline1 set to manually installed.
libuchardet0 is already the newest version (0.0.8-1+b2).
libuchardet0 set to manually installed.
libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1).
libjs-jquery set to manually installed.
python3-dev is already the newest version (3.13.2-1).
python3-dev set to manually installed.
media-types is already the newest version (12.0.0).
media-types set to manually installed.
libbrotli-dev is already the newest version (1.1.0-2+b6).
libbrotli-dev set to manually installed.
patch is already the newest version (2.7.6-7).
patch set to manually installed.
libmount1 is already the newest version (2.40.4-5).
pkgconf is already the newest version (1.8.1-4).
pkgconf set to manually installed.
libmagic1t64 is already the newest version (1:5.45-3+b1).
libmagic1t64 set to manually installed.
libpam-modules is already the newest version (1.7.0-3).
libctf-nobfd0 is already the newest version (2.44-2).
libctf-nobfd0 set to manually installed.
coreutils is already the newest version (9.5-1).
libhts-dev is already the newest version (1.21+ds-1).
libhts-dev set to manually installed.
libkdb5-10t64 is already the newest version (1.21.3-4).
libkdb5-10t64 set to manually installed.
libpython3.13 is already the newest version (3.13.2-1).
libpython3.13 set to manually installed.
openssl-provider-legacy is already the newest version (3.4.1-1).
libbinutils is already the newest version (2.44-2).
libbinutils set to manually installed.
python3-pluggy is already the newest version (1.5.0-1).
python3-pluggy set to manually installed.
g++-14 is already the newest version (14.2.0-17).
g++-14 set to manually installed.
libsystemd0 is already the newest version (257.3-1).
dwz is already the newest version (0.15-1+b3).
dwz set to manually installed.
python3-jaraco.functools is already the newest version (4.1.0-1).
python3-jaraco.functools set to manually installed.
libdebconfclient0 is already the newest version (0.277).
libldap-dev is already the newest version (2.6.9+dfsg-1).
libldap-dev set to manually installed.
libmagic-mgc is already the newest version (1:5.45-3+b1).
libmagic-mgc set to manually installed.
dh-strip-nondeterminism is already the newest version (1.14.1-2).
dh-strip-nondeterminism set to manually installed.
cpp-14 is already the newest version (14.2.0-17).
cpp-14 set to manually installed.
libmd0 is already the newest version (1.1.0-2+b1).
m4 is already the newest version (1.4.19-5).
m4 set to manually installed.
libc6 is already the newest version (2.40-7).
libexpat1 is already the newest version (2.6.4-1).
libexpat1 set to manually installed.
gcc-14-arm-linux-gnueabi is already the newest version (14.2.0-17).
gcc-14-arm-linux-gnueabi set to manually installed.
libreadline8t64 is already the newest version (8.2-6).
libreadline8t64 set to manually installed.
krb5-multidev is already the newest version (1.21.3-4).
krb5-multidev set to manually installed.
libgcc-s1 is already the newest version (14.2.0-17).
libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1).
libevent-2.1-7t64 set to manually installed.
libbrotli1 is already the newest version (1.1.0-2+b6).
libbrotli1 set to manually installed.
libpkgconf3 is already the newest version (1.8.1-4).
libpkgconf3 set to manually installed.
bash is already the newest version (5.2.37-1.1).
base-files is already the newest version (13.6).
libc-bin is already the newest version (2.40-7).
libgnutls-openssl27t64 is already the newest version (3.8.9-2).
libgnutls-openssl27t64 set to manually installed.
libcom-err2 is already the newest version (1.47.2-1).
libcom-err2 set to manually installed.
libpython3.13-stdlib is already the newest version (3.13.2-1).
libpython3.13-stdlib set to manually installed.
python3-typing-extensions is already the newest version (4.12.2-2).
python3-typing-extensions set to manually installed.
gcc-14 is already the newest version (14.2.0-17).
gcc-14 set to manually installed.
cython3 is already the newest version (3.0.11+dfsg-2).
cython3 set to manually installed.
autoconf is already the newest version (2.72-3).
autoconf set to manually installed.
libncursesw6 is already the newest version (6.5+20250216-1).
libncursesw6 set to manually installed.
libpcre2-8-0 is already the newest version (10.45-1).
libisl23 is already the newest version (0.27-1).
libisl23 set to manually installed.
python3-zipp is already the newest version (3.21.0-1).
python3-zipp set to manually installed.
sysvinit-utils is already the newest version (3.14-3).
zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1).
zlib1g-dev set to manually installed.
cpp-14-arm-linux-gnueabi is already the newest version (14.2.0-17).
cpp-14-arm-linux-gnueabi set to manually installed.
libicu72 is already the newest version (72.1-6).
libicu72 set to manually installed.
python3-jaraco.text is already the newest version (4.0.0-1).
python3-jaraco.text set to manually installed.
rpcsvc-proto is already the newest version (1.4.3-1).
rpcsvc-proto set to manually installed.
cpp-arm-linux-gnueabi is already the newest version (4:14.2.0-1).
cpp-arm-linux-gnueabi set to manually installed.
libhts3t64 is already the newest version (1.21+ds-1).
libhts3t64 set to manually installed.
gcc-arm-linux-gnueabi is already the newest version (4:14.2.0-1).
gcc-arm-linux-gnueabi set to manually installed.
libk5crypto3 is already the newest version (1.21.3-4).
libk5crypto3 set to manually installed.
cpp is already the newest version (4:14.2.0-1).
cpp set to manually installed.
libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-3).
libgmpxx4ldbl set to manually installed.
xz-utils is already the newest version (5.6.3-1+b1).
xz-utils set to manually installed.
libbz2-dev is already the newest version (1.0.8-6).
libbz2-dev set to manually installed.
python3-inflect is already the newest version (7.3.1-2).
python3-inflect set to manually installed.
gzip is already the newest version (1.13-1).
libssh2-1-dev is already the newest version (1.11.1-1).
libssh2-1-dev set to manually installed.
libgmp10 is already the newest version (2:6.3.0+dfsg-3).
python3-pytest is already the newest version (8.3.4-1).
python3-pytest set to manually installed.
debianutils is already the newest version (5.21).
comerr-dev is already the newest version (2.1-1.47.2-1).
comerr-dev set to manually installed.
libkadm5srv-mit12 is already the newest version (1.21.3-4).
libkadm5srv-mit12 set to manually installed.
python3-iniconfig is already the newest version (1.1.1-2).
python3-iniconfig set to manually installed.
libaudit-common is already the newest version (1:4.0.2-2).
libnettle8t64 is already the newest version (3.10.1-1).
libnettle8t64 set to manually installed.
sed is already the newest version (4.9-2).
libp11-kit-dev is already the newest version (0.25.5-3).
libp11-kit-dev set to manually installed.
libssl3t64 is already the newest version (3.4.1-1).
libnghttp2-14 is already the newest version (1.64.0-1).
libnghttp2-14 set to manually installed.
zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1).
libarchive-zip-perl is already the newest version (1.68-1).
libarchive-zip-perl set to manually installed.
libacl1 is already the newest version (2.3.2-2+b1).
librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5).
librtmp1 set to manually installed.
libtasn1-6 is already the newest version (4.20.0-2).
libtasn1-6 set to manually installed.
libngtcp2-dev is already the newest version (1.9.1-1).
libngtcp2-dev set to manually installed.
binutils-arm-linux-gnueabi is already the newest version (2.44-2).
binutils-arm-linux-gnueabi set to manually installed.
libzstd-dev is already the newest version (1.5.6+dfsg-2).
libzstd-dev set to manually installed.
mawk is already the newest version (1.3.4.20250131-1).
libgdbm-compat4t64 is already the newest version (1.24-2).
libgdbm-compat4t64 set to manually installed.
autotools-dev is already the newest version (20220109.1).
autotools-dev set to manually installed.
libatomic1 is already the newest version (14.2.0-17).
libperl5.40 is already the newest version (5.40.1-2).
libperl5.40 set to manually installed.
init-system-helpers is already the newest version (1.68).
libpam0g is already the newest version (1.7.0-3).
gettext-base is already the newest version (0.23.1-1).
gettext-base set to manually installed.
file is already the newest version (1:5.45-3+b1).
file set to manually installed.
hostname is already the newest version (3.25).
libpython3-stdlib is already the newest version (3.13.2-1).
libpython3-stdlib set to manually installed.
libcrypt-dev is already the newest version (1:4.4.38-1).
libcrypt-dev set to manually installed.
libsasl2-modules-db is already the newest version (2.1.28+dfsg1-8+b1).
libsasl2-modules-db set to manually installed.
python3-pkg-resources is already the newest version (75.8.0-1).
python3-pkg-resources set to manually installed.
libgdbm6t64 is already the newest version (1.24-2).
libgdbm6t64 set to manually installed.
bsdutils is already the newest version (1:2.40.4-5).
python3-typeguard is already the newest version (4.4.2-1).
python3-typeguard set to manually installed.
libpam-modules-bin is already the newest version (1.7.0-3).
libmpc3 is already the newest version (1.3.1-1+b3).
libmpc3 set to manually installed.
libngtcp2-crypto-gnutls-dev is already the newest version (1.9.1-1).
libngtcp2-crypto-gnutls-dev set to manually installed.
dh-python is already the newest version (6.20250108).
dh-python set to manually installed.
automake is already the newest version (1:1.17-3).
automake set to manually installed.
libssh2-1t64 is already the newest version (1.11.1-1).
libssh2-1t64 set to manually installed.
perl-base is already the newest version (5.40.1-2).
libdb5.3t64 is already the newest version (5.3.28+dfsg2-9).
libgnutls30t64 is already the newest version (3.8.9-2).
libgnutls30t64 set to manually installed.
python3-setuptools is already the newest version (75.8.0-1).
python3-setuptools set to manually installed.
readline-common is already the newest version (8.2-6).
readline-common set to manually installed.
make is already the newest version (4.4.1-1).
make set to manually installed.
gcc-14-base is already the newest version (14.2.0-17).
python3-autocommand is already the newest version (2.2.2-3).
python3-autocommand set to manually installed.
python3.13-dev is already the newest version (3.13.2-1).
python3.13-dev set to manually installed.
base-passwd is already the newest version (3.6.6).
util-linux is already the newest version (2.40.4-5).
libaudit1 is already the newest version (1:4.0.2-2+b1).
libgmp-dev is already the newest version (2:6.3.0+dfsg-3).
libgmp-dev set to manually installed.
libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.2+b1).
libxml2 set to manually installed.
libkadm5clnt-mit12 is already the newest version (1.21.3-4).
libkadm5clnt-mit12 set to manually installed.
g++-14-arm-linux-gnueabi is already the newest version (14.2.0-17).
g++-14-arm-linux-gnueabi set to manually installed.
libdeflate0 is already the newest version (1.23-1+b1).
libdeflate0 set to manually installed.
pkgconf-bin is already the newest version (1.8.1-4).
pkgconf-bin set to manually installed.
bsdextrautils is already the newest version (2.40.4-5).
bsdextrautils set to manually installed.
python3-minimal is already the newest version (3.13.2-1).
python3-minimal set to manually installed.
dpkg-dev is already the newest version (1.22.15).
dpkg-dev set to manually installed.
libjs-sphinxdoc is already the newest version (8.1.3-5).
libjs-sphinxdoc set to manually installed.
libattr1 is already the newest version (1:2.5.2-3).
python3-jaraco.context is already the newest version (6.0.0-1).
python3-jaraco.context set to manually installed.
librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-2+b5).
librtmp-dev set to manually installed.
libpam-runtime is already the newest version (1.7.0-3).
libbz2-1.0 is already the newest version (1.0.8-6).
libtasn1-6-dev is already the newest version (4.20.0-2).
libtasn1-6-dev set to manually installed.
libldap2 is already the newest version (2.6.9+dfsg-1).
libldap2 set to manually installed.
libsasl2-2 is already the newest version (2.1.28+dfsg1-8+b1).
libsasl2-2 set to manually installed.
libkrb5-3 is already the newest version (1.21.3-4).
libkrb5-3 set to manually installed.
libidn2-dev is already the newest version (2.3.7-2+b1).
libidn2-dev set to manually installed.
libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3).
libjs-underscore set to manually installed.
python3.13-minimal is already the newest version (3.13.2-1).
python3.13-minimal set to manually installed.
g++-arm-linux-gnueabi is already the newest version (4:14.2.0-1).
g++-arm-linux-gnueabi set to manually installed.
libjansson4 is already the newest version (2.14-2+b3).
libjansson4 set to manually installed.
diffutils is already the newest version (1:3.10-2).
libc6-dev is already the newest version (2.40-7).
libc6-dev set to manually installed.
libkrb5-dev is already the newest version (1.21.3-4).
libkrb5-dev set to manually installed.
libtool is already the newest version (2.5.4-3).
libtool set to manually installed.
libubsan1 is already the newest version (14.2.0-17).
libubsan1 set to manually installed.
libgssrpc4t64 is already the newest version (1.21.3-4).
libgssrpc4t64 set to manually installed.
bzip2 is already the newest version (1.0.8-6).
bzip2 set to manually installed.
libdpkg-perl is already the newest version (1.22.15).
libdpkg-perl set to manually installed.
libudev1 is already the newest version (257.3-1).
binutils is already the newest version (2.44-2).
binutils set to manually installed.
perl is already the newest version (5.40.1-2).
perl set to manually installed.
netbase is already the newest version (6.4).
netbase set to manually installed.
libexpat1-dev is already the newest version (2.6.4-1).
libexpat1-dev set to manually installed.
libctf0 is already the newest version (2.44-2).
libctf0 set to manually installed.
libsmartcols1 is already the newest version (2.40.4-5).
liblzma-dev is already the newest version (5.6.3-1+b1).
liblzma-dev set to manually installed.
gcc is already the newest version (4:14.2.0-1).
gcc set to manually installed.
libnghttp3-9 is already the newest version (1.6.0-2).
libnghttp3-9 set to manually installed.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR
(Reading database ... 18018 files and directories currently installed.)
Removing debootsnap-dummy (1.0) ...
I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR
I: running special hook: download /pkglist ./pkglist
I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR
I: running special hook: upload sources.list /etc/apt/sources.list
I: waiting for background processes to finish...
I: cleaning package lists and apt cache...
I: skipping cleanup/reproducible as requested
I: creating tarball...
I: done
I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.uKjzdamjwR...
I: success in 52.0837 seconds

Downloading dependency 133 of 250: libncursesw6:armel=6.5+20250216-1
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Downloading dependency 135 of 250: libisl23:armel=0.27-1
Downloading dependency 136 of 250: python3-zipp:armel=3.21.0-1
Downloading dependency 137 of 250: sysvinit-utils:armel=3.14-3
Downloading dependency 138 of 250: zlib1g-dev:armel=1:1.3.dfsg+really1.3.1-1+b1
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Downloading dependency 142 of 250: rpcsvc-proto:armel=1.4.3-1
Downloading dependency 143 of 250: cpp-arm-linux-gnueabi:armel=4:14.2.0-1
Downloading dependency 144 of 250: libhts3t64:armel=1.21+ds-1
Downloading dependency 145 of 250: gcc-arm-linux-gnueabi:armel=4:14.2.0-1
Downloading dependency 146 of 250: libk5crypto3:armel=1.21.3-4
Downloading dependency 147 of 250: cpp:armel=4:14.2.0-1
Downloading dependency 148 of 250: libgmpxx4ldbl:armel=2:6.3.0+dfsg-3
Downloading dependency 149 of 250: xz-utils:armel=5.6.3-1+b1
Downloading dependency 150 of 250: libbz2-dev:armel=1.0.8-6
Downloading dependency 151 of 250: python3-inflect:armel=7.3.1-2
Downloading dependency 152 of 250: gzip:armel=1.13-1
Downloading dependency 153 of 250: libssh2-1-dev:armel=1.11.1-1
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Downloading dependency 155 of 250: python3-pytest:armel=8.3.4-1
Downloading dependency 156 of 250: debianutils:armel=5.21
Downloading dependency 157 of 250: comerr-dev:armel=2.1-1.47.2-1
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Downloading dependency 159 of 250: python3-iniconfig:armel=1.1.1-2
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Downloading dependency 162 of 250: sed:armel=4.9-2
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Downloading dependency 168 of 250: libacl1:armel=2.3.2-2+b1
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Downloading dependency 174 of 250: mawk:armel=1.3.4.20250131-1
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Downloading dependency 181 of 250: gettext-base:armel=0.23.1-1
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Downloading dependency 187 of 250: python3-pkg-resources:armel=75.8.0-1
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Downloading dependency 194 of 250: dh-python:armel=6.20250108
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Downloading dependency 206 of 250: base-passwd:armel=3.6.6
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Downloading dependency 213 of 250: libdeflate0:armel=1.23-1+b1
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Downloading dependency 244 of 250: netbase:armel=6.4
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Downloading dependency 246 of 250: libctf0:armel=2.44-2
Downloading dependency 247 of 250: libsmartcols1:armel=2.40.4-5
Downloading dependency 248 of 250: liblzma-dev:armel=5.6.3-1+b1
Downloading dependency 249 of 250: gcc:armel=4:14.2.0-1
Downloading dependency 250 of 250: libnghttp3-9:armel=1.6.0-2
env --chdir=/srv/rebuilderd/tmp/rebuilderdaRUinG/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1740630623 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildR8siJ3/debrebuild.sbuildrc.KgEaWy0Bc8en sbuild --build=armel --host=armel --no-source --arch-any --no-arch-all --binNMU-changelog=
python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes

  * Binary-only non-maintainer upload for armel; no source changes.
  * Rebuild with Python 3.13 only

 -- arm Build Daemon (arm-conova-02) <buildd_arm64-arm-conova-02@buildd.debian.org>  Thu, 27 Feb 2025 04:30:23 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildR8siJ3/debrebuild.tar._UTz23S7kwud --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=python-pysam-0.23.0+ds /srv/rebuilderd/tmp/rebuilderdaRUinG/inputs/python-pysam_0.23.0+ds-1.dsc
I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl
The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future.
To start using "unshare" add this to your `~/.config/sbuild/config.pl`:
	$chroot_mode = "unshare";
If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`:
	$chroot_mode = "schroot";
	$schroot = "schroot";
sbuild: warning:                descr(l1): found blank line where expected first heading
sbuild (Debian sbuild) 0.89.3 (07 June 2025) on codethink05-arm64

+==============================================================================+
| python-pysam 0.23.0+ds-1+b1 (armel)          Thu, 24 Jul 2025 04:17:50 +0000 |
+==============================================================================+

Package: python-pysam
Version: 0.23.0+ds-1+b1
Source Version: 0.23.0+ds-1
Distribution: unstable
Machine Architecture: arm64
Host Architecture: armel
Build Architecture: armel
Build Type: any

I: No tarballs found in /srv/rebuilderd/.cache/sbuild
I: Unpacking /srv/rebuilderd/tmp/debrebuildR8siJ3/debrebuild.tar._UTz23S7kwud to /srv/rebuilderd/tmp/tmp.sbuild.mAeS2aZYBX...
I: Setting up the chroot...
I: Creating chroot session...
I: Setting up log color...
I: Setting up apt archive...

+------------------------------------------------------------------------------+
| Fetch source files                           Thu, 24 Jul 2025 04:17:57 +0000 |
+------------------------------------------------------------------------------+


Local sources
-------------

/srv/rebuilderd/tmp/rebuilderdaRUinG/inputs/python-pysam_0.23.0+ds-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdaRUinG/inputs; copying to chroot
sbuild: warning:                descr(l1): found blank line where expected first heading

+------------------------------------------------------------------------------+
| Install package build dependencies           Thu, 24 Jul 2025 04:18:00 +0000 |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-Oe4HIC/apt_archive/sbuild-build-depends-main-dummy.deb'.

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies

+------------------------------------------------------------------------------+
| Check architectures                          Thu, 24 Jul 2025 04:18:06 +0000 |
+------------------------------------------------------------------------------+

Arch check ok (armel included in any all)

+------------------------------------------------------------------------------+
| Build environment                            Thu, 24 Jul 2025 04:18:06 +0000 |
+------------------------------------------------------------------------------+

Kernel: Linux 6.12.35+deb13-cloud-arm64 #1 SMP Debian 6.12.35-1 (2025-07-03) arm64 (aarch64)
Toolchain package versions: binutils_2.44-2 dpkg-dev_1.22.15 g++-14_14.2.0-17 gcc-14_14.2.0-17 libc6-dev_2.40-7 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 linux-libc-dev_6.12.16-1
Package versions: autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1.1 bcftools_1.21-1 binutils_2.44-2 binutils-arm-linux-gnueabi_2.44-2 binutils-common_2.44-2 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-17 cpp-14-arm-linux-gnueabi_14.2.0-17 cpp-arm-linux-gnueabi_4:14.2.0-1 cython3_3.0.11+dfsg-2 dash_0.5.12-12 debconf_1.5.89 debhelper_13.24.1 debianutils_5.21 dh-autoreconf_20 dh-python_6.20250108 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 dpkg_1.22.15 dpkg-dev_1.22.15 dwz_0.15-1+b3 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-17 g++-14-arm-linux-gnueabi_14.2.0-17 g++-arm-linux-gnueabi_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-17 gcc-14-arm-linux-gnueabi_14.2.0-17 gcc-14-base_14.2.0-17 gcc-arm-linux-gnueabi_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-4 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-17 libatomic1_14.2.0-17 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libbinutils_2.44-2 libblkid1_2.40.4-5 libbrotli-dev_1.1.0-2+b6 libbrotli1_1.1.0-2+b6 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-7 libc-dev-bin_2.40-7 libc6_2.40-7 libc6-dev_2.40-7 libcap-ng0_0.8.5-4 libcap2_1:2.73-4 libcc1-0_14.2.0-17 libcom-err2_1.47.2-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-2 libctf0_2.44-2 libcurl3t64-gnutls_8.12.1-3 libcurl4-gnutls-dev_8.12.1-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdeflate-dev_1.23-1+b1 libdeflate0_1.23-1+b1 libdpkg-perl_1.22.15 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.6.4-1 libexpat1-dev_2.6.4-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-17 libgcc-s1_14.2.0-17 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-17 libgssapi-krb5-2_1.21.3-4 libgssrpc4t64_1.21.3-4 libhogweed6t64_3.10.1-1 libhts-dev_1.21+ds-1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-2 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libidn2-dev_2.3.7-2+b1 libisl23_0.27-1 libjansson4_2.14-2+b3 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_8.1.3-5 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.21.3-4 libkadm5clnt-mit12_1.21.3-4 libkadm5srv-mit12_1.21.3-4 libkdb5-10t64_1.21.3-4 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-4 libkrb5-dev_1.21.3-4 libkrb5support0_1.21.3-4 libldap-dev_2.6.9+dfsg-1 libldap2_2.6.9+dfsg-1 liblzma-dev_5.6.3-1+b1 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncurses6_6.5+20250216-1 libncursesw6_6.5+20250216-1 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libnghttp3-9_1.6.0-2 libnghttp3-dev_1.6.0-2 libngtcp2-16_1.9.1-1 libngtcp2-crypto-gnutls-dev_1.9.1-1 libngtcp2-crypto-gnutls8_1.9.1-1 libngtcp2-dev_1.9.1-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-all-dev_3.13.2-1 libpython3-dev_3.13.2-1 libpython3-stdlib_3.13.2-1 libpython3.13_3.13.2-1 libpython3.13-dev_3.13.2-1 libpython3.13-minimal_3.13.2-1 libpython3.13-stdlib_3.13.2-1 libreadline8t64_8.2-6 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-8+b1 libsasl2-modules-db_2.1.28+dfsg1-8+b1 libseccomp2_2.5.5-2 libselinux1_3.8-4 libsframe1_2.44-2 libsmartcols1_2.40.4-5 libsqlite3-0_3.46.1-1 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.4.1-1 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 libsystemd0_257.3-1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-1 libtool_2.5.4-3 libubsan1_14.2.0-17 libuchardet0_0.0.8-1+b2 libudev1_257.3-1 libunbound8_1.22.0-1+b1 libunistring5_1.3-1 libuuid1_2.40.4-5 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libzstd-dev_1.5.6+dfsg-2 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.16-1 m4_1.4.19-5 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_12.0.0 ncurses-base_6.5+20250216-1 ncurses-bin_6.5+20250216-1 netbase_6.4 nettle-dev_3.10.1-1 openssl-provider-legacy_3.4.1-1 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.2-1 python3-all_3.13.2-1 python3-all-dev_3.13.2-1 python3-autocommand_2.2.2-3 python3-dev_3.13.2-1 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.2-1 python3-more-itertools_10.6.0-1 python3-packaging_24.2-1 python3-pkg-resources_75.8.0-1 python3-pluggy_1.5.0-1 python3-pytest_8.3.4-1 python3-setuptools_75.8.0-1 python3-typeguard_4.4.2-1 python3-typing-extensions_4.12.2-2 python3-zipp_3.21.0-1 python3.13_3.13.2-1 python3.13-dev_3.13.2-1 python3.13-minimal_3.13.2-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 samtools_1.21-1 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.14-3 tabix_1.21+ds-1 tar_1.35+dfsg-3.1 tzdata_2025a-2 util-linux_2.40.4-5 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                        Thu, 24 Jul 2025 04:18:06 +0000 |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: python-pysam
Binary: python3-pysam, python-pysam-tests
Architecture: any all
Version: 0.23.0+ds-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://pysam.readthedocs.org/en/latest
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-pysam
Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: @builddeps@
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix <!nocheck>, samtools <!nocheck>, bcftools <!nocheck>, python3-pytest <!nocheck>
Package-List:
 python-pysam-tests deb python optional arch=all
 python3-pysam deb python optional arch=any
Checksums-Sha1:
 d6643c33e0ed4b826b9fe1697c7e4b9a3fe07276 1519052 python-pysam_0.23.0+ds.orig.tar.xz
 8d5169d2640519f5b5d265b7988a8a5bb66593ef 10632 python-pysam_0.23.0+ds-1.debian.tar.xz
Checksums-Sha256:
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 9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440 10632 python-pysam_0.23.0+ds-1.debian.tar.xz
Files:
 13b8d89edd6fcb0dd9e1316d392a56bc 1519052 python-pysam_0.23.0+ds.orig.tar.xz
 0d2415af082e79088a530fe11a211864 10632 python-pysam_0.23.0+ds-1.debian.tar.xz

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dpkg-source: warning: cannot verify inline signature for ./python-pysam_0.23.0+ds-1.dsc: unsupported subcommand
dpkg-source: info: extracting python-pysam in /build/reproducible-path/python-pysam-0.23.0+ds
dpkg-source: info: unpacking python-pysam_0.23.0+ds.orig.tar.xz
dpkg-source: info: unpacking python-pysam_0.23.0+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_remote.patch
dpkg-source: info: applying clean_less
dpkg-source: info: applying skip-test-on-32-bit.patch

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 0.23.0+ds-1+b1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=8
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LC_COLLATE=C.UTF-8
LC_CTYPE=C.UTF-8
LOGNAME=sbuild
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
SOURCE_DATE_EPOCH=1740630623
USER=sbuild

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -B
dpkg-buildpackage: info: source package python-pysam
dpkg-buildpackage: info: source version 0.23.0+ds-1+b1
dpkg-buildpackage: info: source distribution sid
dpkg-buildpackage: info: source changed by arm Build Daemon (arm-conova-02) <buildd_arm64-arm-conova-02@buildd.debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armel
 debian/rules clean
cd tests/pysam_data && /usr/bin/make clean
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \
all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \
ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \
with_md.sam.gz \
*.fq.gz
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
cd tests/cbcf_data && /usr/bin/make clean
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
find . -name "*.pyc" -delete
find . -name "*.pyxbldc" -delete
find . -name "tmp_*.bam" -delete
find . -name "*.bai*" -delete
find . -name "*.cram*" -delete
find . -name "pysam_uncompressed.bam" -delete
rm -rf	tests/pysam_test_work \
	tests/example_htslib.gtf.gz.tbi \
	tests/log.txt \
	tests/test.bam \
	tests/_compile_test.c \
	tests/pysam_ex2.sam \
	tests/__pycache__ \
	pysam/calignmentfile.c \
	pysam/cbcf.c \
	tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \
	tests/pysam_data/ex1.fa.gz \
	tests/pysam_data/ex1.fa.gz.gzi \
	tests/pysam_data/ex1_csi.bam.csi
rm -rf .pytest_cache/
dh clean --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds'
dh_auto_clean
I: pybuild base:311: python3.13 setup.py clean 
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is external
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
running clean
removing '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build' (and everything under it)
'build/bdist.linux-arm' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
rm -f \
	pysam/config.py \
	pysam/config.h \
	pysam/lib*.c \
	samtools/config.h \
	bcftools/config.h
rm -rf pysam.egg-info
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config 
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is external
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build 
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is external
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
running build
running build_py
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include
copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include
running egg_info
creating pysam.egg-info
writing pysam.egg-info/PKG-INFO
writing dependency_links to pysam.egg-info/dependency_links.txt
writing top-level names to pysam.egg-info/top_level.txt
writing manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'KNOWN_BUGS'
warning: no files found matching 'THANKS'
warning: no files found matching 'pysam/libc*.c'
warning: no files found matching 'win32/*.[ch]'
warning: no files found matching 'htslib/LICENSE'
warning: no files found matching 'htslib/README'
warning: no files found matching '*.[ch]' under directory 'htslib'
warning: no previously-included files found matching 'htslib/*config*.h'
warning: no files found matching 'htslib/configure.ac'
warning: no files found matching 'htslib/m4/*.m4'
warning: no files found matching 'htslib/*.in'
warning: no files found matching 'htslib/configure'
warning: no files found matching 'htslib/config.guess'
warning: no files found matching 'htslib/config.sub'
warning: no files found matching 'htslib/version.sh'
warning: no files found matching 'htslib/Makefile'
warning: no files found matching 'htslib/*.mk'
warning: no previously-included files found matching 'htslib/config.mk'
warning: no previously-included files found matching 'htslib/htscodecs.mk'
adding license file 'COPYING'
adding license file 'AUTHORS'
writing manifest file 'pysam.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'pysam.include.samtools.lz4' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'pysam.include.samtools.lz4' to be distributed and are
        already explicitly excluding 'pysam.include.samtools.lz4' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4
copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
running build_ext
Compiling pysam/libchtslib.pyx because it changed.
[1/1] Cythonizing pysam/libchtslib.pyx
building 'pysam.libchtslib' extension
creating build/temp.linux-arm-cpython-313/pysam
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/htslib_util.c -o build/temp.linux-arm-cpython-313/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libchtslib.c -o build/temp.linux-arm-cpython-313/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libchtslib.c:2924:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 2924 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/htslib_util.o build/temp.linux-arm-cpython-313/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension
Compiling pysam/libcsamtools.pyx because it changed.
[1/1] Cythonizing pysam/libcsamtools.pyx
building 'pysam.libcsamtools' extension
creating build/temp.linux-arm-cpython-313/samtools
creating build/temp.linux-arm-cpython-313/samtools/lz4
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcsamtools.c -o build/temp.linux-arm-cpython-313/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_color.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_import.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_index.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_md.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_split.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bamtk.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bedcov.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bedidx.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/coverage.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/cram_size.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/cut_target.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/dict.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/faidx.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/lz4/lz4.c -o build/temp.linux-arm-cpython-313/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/padding.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/phase.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/reference.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/reset.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_view.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sample.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/samtools.pysam.c -o build/temp.linux-arm-cpython-313/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/stats.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-arm-cpython-313/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcsamtools.o build/temp.linux-arm-cpython-313/samtools/amplicon_stats.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam2depth.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_addrprg.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_aux.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_cat.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_color.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_consensus.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_fastq.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_flags.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_import.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_index.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_lpileup.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_markdup.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_mate.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_md.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_plbuf.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_plcmd.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_quickcheck.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_reheader.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_rmdup.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_rmdupse.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_samples.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_sort.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_split.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bam_stat.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bamshuf.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bamtk.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bedcov.c.pysam.o build/temp.linux-arm-cpython-313/samtools/bedidx.c.pysam.o build/temp.linux-arm-cpython-313/samtools/consensus_pileup.c.pysam.o build/temp.linux-arm-cpython-313/samtools/coverage.c.pysam.o build/temp.linux-arm-cpython-313/samtools/cram_size.c.pysam.o build/temp.linux-arm-cpython-313/samtools/cut_target.c.pysam.o build/temp.linux-arm-cpython-313/samtools/dict.c.pysam.o build/temp.linux-arm-cpython-313/samtools/faidx.c.pysam.o build/temp.linux-arm-cpython-313/samtools/lz4/lz4.o build/temp.linux-arm-cpython-313/samtools/padding.c.pysam.o build/temp.linux-arm-cpython-313/samtools/phase.c.pysam.o build/temp.linux-arm-cpython-313/samtools/reference.c.pysam.o build/temp.linux-arm-cpython-313/samtools/reset.c.pysam.o build/temp.linux-arm-cpython-313/samtools/sam_opts.c.pysam.o build/temp.linux-arm-cpython-313/samtools/sam_utils.c.pysam.o build/temp.linux-arm-cpython-313/samtools/sam_view.c.pysam.o build/temp.linux-arm-cpython-313/samtools/sample.c.pysam.o build/temp.linux-arm-cpython-313/samtools/samtools.pysam.o build/temp.linux-arm-cpython-313/samtools/stats.c.pysam.o build/temp.linux-arm-cpython-313/samtools/stats_isize.c.pysam.o build/temp.linux-arm-cpython-313/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcbcftools.pyx because it changed.
[1/1] Cythonizing pysam/libcbcftools.pyx
building 'pysam.libcbcftools' extension
creating build/temp.linux-arm-cpython-313/bcftools
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/HMM.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/abuf.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bcftools.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bin.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/ccall.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/cols.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/consensus.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/convert.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/csq.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/dist.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/edlib.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/em.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/extsort.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/filter.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/gff.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/hclust.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/kmin.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/main.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/mcall.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/prob1.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/regidx.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/reheader.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/tabix.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/version.c.pysam.c -o build/temp.linux-arm-cpython-313/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbcftools.c -o build/temp.linux-arm-cpython-313/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/bcftools/HMM.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/abuf.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/bam2bcf.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/bam_sample.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/bcftools.pysam.o build/temp.linux-arm-cpython-313/bcftools/bin.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/ccall.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/cols.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/consensus.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/convert.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/csq.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/dist.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/edlib.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/em.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/extsort.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/filter.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/gff.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/gvcf.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/hclust.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/kmin.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/main.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/mcall.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/mpileup.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/ploidy.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/prob1.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/read_consensus.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/regidx.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/reheader.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/smpl_ilist.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/str_finder.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/tabix.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/tsv2vcf.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfannotate.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfbuf.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfcall.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfcnv.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfconcat.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfconvert.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcffilter.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfhead.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfindex.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfisec.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfmerge.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfnorm.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfplugin.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfquery.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfroh.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfsom.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfsort.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfstats.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcfview.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/vcmp.c.pysam.o build/temp.linux-arm-cpython-313/bcftools/version.c.pysam.o build/temp.linux-arm-cpython-313/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcutils.pyx because it changed.
[1/1] Cythonizing pysam/libcutils.pyx
building 'pysam.libcutils' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcutils.c -o build/temp.linux-arm-cpython-313/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcutils.c:2473:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 2473 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/pysam_util.c -o build/temp.linux-arm-cpython-313/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcutils.o build/temp.linux-arm-cpython-313/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcsamtools.cpython-313-arm-linux-gnueabi -lcbcftools.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
warning: pysam/libcalignmentfile.pyx:2567:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2572:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2577:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2616:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2621:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2626:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
Compiling pysam/libcalignmentfile.pyx because it changed.
[1/1] Cythonizing pysam/libcalignmentfile.pyx
building 'pysam.libcalignmentfile' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcalignmentfile.c -o build/temp.linux-arm-cpython-313/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcalignmentfile.c:3785:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3785 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’:
pysam/libcalignmentfile.c:20533:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
20533 |             (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’:
pysam/libcalignmentfile.c:37169:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
37169 |         (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0));
      |               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcsamfile.pyx because it changed.
[1/1] Cythonizing pysam/libcsamfile.pyx
building 'pysam.libcsamfile' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcsamfile.c -o build/temp.linux-arm-cpython-313/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcsamfile.c:3296:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3296 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcalignedsegment.pyx because it changed.
[1/1] Cythonizing pysam/libcalignedsegment.pyx
building 'pysam.libcalignedsegment' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcalignedsegment.c -o build/temp.linux-arm-cpython-313/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcalignedsegment.c:4315:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 4315 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libctabix.pyx because it changed.
[1/1] Cythonizing pysam/libctabix.pyx
building 'pysam.libctabix' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libctabix.c -o build/temp.linux-arm-cpython-313/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libctabix.c:3568:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3568 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcfaidx.pyx because it changed.
[1/1] Cythonizing pysam/libcfaidx.pyx
building 'pysam.libcfaidx' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcfaidx.c -o build/temp.linux-arm-cpython-313/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcfaidx.c:3030:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3030 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcbcf.pyx because it changed.
[1/1] Cythonizing pysam/libcbcf.pyx
building 'pysam.libcbcf' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbcf.c -o build/temp.linux-arm-cpython-313/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcbcf.c:4107:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 4107 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’:
pysam/libcbcf.c:85824:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
85824 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’:
pysam/libcbcf.c:80500:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
80500 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’:
pysam/libcbcf.c:44209:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44209 |           bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18));
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c:44235:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44235 |           bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’:
pysam/libcbcf.c:80195:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
80195 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libcbgzf.pyx because it changed.
[1/1] Cythonizing pysam/libcbgzf.pyx
building 'pysam.libcbgzf' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbgzf.c -o build/temp.linux-arm-cpython-313/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcbgzf.c:2482:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 2482 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
Compiling pysam/libctabixproxies.pyx because it changed.
[1/1] Cythonizing pysam/libctabixproxies.pyx
building 'pysam.libctabixproxies' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libctabixproxies.c -o build/temp.linux-arm-cpython-313/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libctabixproxies.c:3086:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3086 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
warning: pysam/libcvcf.pyx:1083:27: Unreachable code
Compiling pysam/libcvcf.pyx because it changed.
[1/1] Cythonizing pysam/libcvcf.pyx
building 'pysam.libcvcf' extension
arm-linux-gnueabi-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcvcf.c -o build/temp.linux-arm-cpython-313/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcvcf.c:3697:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
 3697 |         Py_UNICODE *as_pyunicodes;
      |         ^~~~~~~~~~
arm-linux-gnueabi-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm-cpython-313/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/arm-linux-gnueabi -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabi -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabi -lcutils.cpython-313-arm-linux-gnueabi -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-arm-linux-gnueabi.so -Wl,-rpath,$ORIGIN
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds'
cd tests/pysam_data && /usr/bin/make all
make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
samtools faidx ex1.fa
samtools view --no-PG -bo ex1.bam -t ex1.fa.fai ex1.sam.gz
samtools mpileup -f ex1.fa ex1.bam | gzip > ex1.pileup.gz
[mpileup] 1 samples in 1 input files
gunzip < ex1.sam.gz > ex1.sam
samtools index ex1.bam
samtools view --no-PG -h ex1.bam | gzip > ex2.sam.gz
gunzip < ex2.sam.gz > ex2.sam
samtools view --no-PG -bo ex2.bam ex2.sam
samtools index ex2.bam
samtools calmd --no-PG --output-fmt BAM ex2.bam ex1.fa > with_md.sam.gz
[bam_fillmd1] different NM for read 'EAS139_11:7:46:695:738': 3 -> 8
[bam_fillmd1] different NM for read 'EAS218_4:1:48:9:409': 0 -> 5
[bam_fillmd1] different NM for read 'B7_591:7:200:192:373': 0 -> 5
[bam_fillmd1] different NM for read 'EAS56_65:1:163:846:223': 0 -> 5
[bam_fillmd1] different NM for read 'EAS114_30:7:283:799:560': 0 -> 5
[bam_fillmd1] different NM for read 'B7_595:4:84:802:737': 0 -> 4
[bam_fillmd1] different NM for read 'EAS51_66:5:308:400:602': 0 -> 3
[bam_fillmd1] different NM for read 'EAS54_81:2:285:367:932': 0 -> 3
[bam_fillmd1] different NM for read 'EAS114_39:1:70:147:84': 0 -> 3
[bam_fillmd1] different NM for read 'EAS56_53:1:124:243:35': 2 -> 5
[bam_fillmd1] different NM for read 'EAS1_103:2:226:302:758': 2 -> 3
[bam_fillmd1] different NM for read 'EAS114_28:6:175:705:982': 1 -> 0
[bam_fillmd1] different NM for read 'EAS51_64:4:179:389:585': 7 -> 8
[bam_fillmd1] different NM for read 'B7_589:1:122:337:968': 3 -> 2
[bam_fillmd1] different NM for read 'B7_610:4:15:805:420': 4 -> 5
[bam_fillmd1] different NM for read 'B7_591:2:279:124:41': 2 -> 4
[bam_fillmd1] different NM for read 'EAS112_32:8:89:254:332': 0 -> 1
[bam_fillmd1] different NM for read 'B7_597:7:103:731:697': 0 -> 2
[bam_fillmd1] different NM for read 'EAS139_11:2:71:83:58': 0 -> 2
[bam_fillmd1] different NM for read 'EAS192_3:4:63:5:870': 0 -> 2
[bam_fillmd1] different NM for read 'EAS139_19:2:29:1822:1881': 0 -> 2
[bam_fillmd1] different NM for read 'EAS188_7:3:15:568:42': 2 -> 1
[bam_fillmd1] different NM for read 'EAS1_95:4:176:971:874': 0 -> 1
[bam_fillmd1] different NM for read 'EAS1_99:1:34:649:318': 3 -> 4
[bam_fillmd1] different NM for read 'EAS54_65:4:61:346:384': 3 -> 4
[bam_fillmd1] different NM for read 'B7_597:6:20:592:496': 0 -> 1
[bam_fillmd1] different NM for read 'B7_597:4:38:999:463': 2 -> 1
[bam_fillmd1] different NM for read 'EAS114_28:5:23:944:377': 0 -> 3
[bam_fillmd1] different NM for read 'EAS219_1:3:90:219:528': 0 -> 3
[bam_fillmd1] different NM for read 'EAS1_108:5:89:942:84': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_108:6:159:493:275': 0 -> 5
[bam_fillmd1] different NM for read 'EAS139_11:1:81:1019:558': 0 -> 5
[bam_fillmd1] different NM for read 'EAS51_62:7:162:195:761': 0 -> 4
[bam_fillmd1] different NM for read 'B7_597:3:115:646:430': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_30:6:243:209:110': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_108:2:266:994:429': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_30:5:32:461:154': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_39:6:7:492:1088': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_95:6:174:650:125': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_59:6:89:457:591': 1 -> 5
[bam_fillmd1] different NM for read 'EAS114_39:2:38:670:564': 0 -> 4
[bam_fillmd1] different NM for read 'EAS188_7:4:92:693:228': 1 -> 6
[bam_fillmd1] different NM for read 'EAS218_1:4:61:1369:440': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_26:4:123:1001:580': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_39:4:10:1312:1558': 0 -> 4
[bam_fillmd1] different NM for read 'EAS220_1:8:45:178:1321': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_59:5:125:137:58': 0 -> 4
[bam_fillmd1] different NM for read 'EAS192_3:3:285:349:797': 1 -> 5
[bam_fillmd1] different NM for read 'EAS114_45:5:56:1757:1319': 0 -> 4
[bam_fillmd1] different NM for read 'B7_591:3:291:404:199': 0 -> 4
[bam_fillmd1] different NM for read 'EAS54_65:7:159:253:353': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_57:1:122:38:103': 0 -> 4
[bam_fillmd1] different NM for read 'EAS188_4:5:103:870:105': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_105:8:24:718:322': 3 -> 7
[bam_fillmd1] different NM for read 'EAS51_64:6:118:41:489': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_61:3:165:665:220': 0 -> 4
[bam_fillmd1] different NM for read 'EAS114_30:6:238:803:383': 0 -> 4
[bam_fillmd1] different NM for read 'EAS1_105:3:232:364:583': 0 -> 3
[bam_fillmd1] different NM for read 'B7_595:2:29:729:70': 3 -> 4
[bam_fillmd1] different NM for read 'EAS114_30:6:220:809:850': 4 -> 6
[bam_fillmd1] different NM for read 'EAS54_65:2:264:157:150': 3 -> 5
[bam_fillmd1] different NM for read 'B7_595:8:26:242:35': 2 -> 1
[bam_fillmd1] different NM for read 'B7_610:7:34:144:868': 4 -> 5
[bam_fillmd1] different NM for read 'B7_597:8:147:360:141': 1 -> 2
[bam_fillmd1] different NM for read 'EAS139_19:2:82:154:1333': 0 -> 4
[bam_fillmd1] different NM for read 'EAS56_63:3:41:468:459': 0 -> 3
[bam_fillmd1] different NM for read 'EAS1_97:4:274:287:423': 0 -> 1
[bam_fillmd1] different NM for read 'EAS114_30:2:303:428:326': 0 -> 1
[bam_fillmd1] different NM for read 'EAS54_71:8:105:854:975': 0 -> 3
gunzip < with_md.sam.gz > with_md.sam
samtools view --no-PG -bo with_md.bam with_md.sam
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
samtools index with_md.bam
samtools view --no-PG -bu -o uncompressed.bam ex2.sam
samtools view --no-PG -bo MM-chebi.bam MM-chebi.sam
samtools view --no-PG -bo MM-double.bam MM-double.sam
samtools view --no-PG -bo MM-explicit.bam MM-explicit.sam
samtools view --no-PG -bo MM-multi.bam MM-multi.sam
samtools view --no-PG -bo MM-orient.bam MM-orient.sam
samtools view --no-PG -bo ex10.bam ex10.sam
samtools view --no-PG -bo ex3.bam ex3.sam
samtools view --no-PG -bo ex4.bam ex4.sam
samtools view --no-PG -bo ex5.bam ex5.sam
samtools view --no-PG -bo ex6.bam ex6.sam
samtools view --no-PG -bo ex8.bam ex8.sam
samtools view --no-PG -bo ex9_fail.bam ex9_fail.sam
samtools view --no-PG -bo ex9_nofail.bam ex9_nofail.sam
samtools view --no-PG -bo ex_spliced.bam ex_spliced.sam
samtools view --no-PG -bo example_aligned_pairs.bam example_aligned_pairs.sam
samtools view --no-PG -bo example_btag.bam example_btag.sam
samtools view --no-PG -bo example_dash_in_chr.bam example_dash_in_chr.sam
samtools view --no-PG -bo example_empty_header.bam example_empty_header.sam
samtools view --no-PG -bo example_empty_with_header.bam example_empty_with_header.sam
samtools view --no-PG -bo example_reverse_complement.bam example_reverse_complement.sam
touch tmp.list
samtools view --no-PG -bo example_unmapped_reads_no_sq.bam -t tmp.list example_unmapped_reads_no_sq.sam
rm -f tmp.list
samtools view --no-PG -bo issue100.bam issue100.sam
samtools view --no-PG -bo rg_with_tab.bam rg_with_tab.sam
samtools view --no-PG -bo softclip.bam softclip.sam
samtools view --no-PG -bo tag_bug.bam tag_bug.sam
samtools view --no-PG -bo test_mapped_unmapped.bam test_mapped_unmapped.sam
samtools view --no-PG -bo test_query_position.bam test_query_position.sam
samtools view --no-PG -bo test_unaligned.bam test_unaligned.sam
samtools index MM-chebi.bam
samtools index MM-double.bam
samtools index MM-explicit.bam
samtools index MM-multi.bam
samtools index MM-orient.bam
samtools index ex10.bam
samtools index ex3.bam
samtools index ex4.bam
samtools index ex5.bam
samtools index ex6.bam
samtools index ex8.bam
samtools index ex9_fail.bam
samtools index ex9_nofail.bam
samtools index ex_spliced.bam
samtools index example_aligned_pairs.bam
samtools index example_btag.bam
samtools index example_dash_in_chr.bam
samtools index example_empty_header.bam
samtools index example_empty_with_header.bam
samtools index example_reverse_complement.bam
samtools index example_unmapped_reads_no_sq.bam
samtools index issue100.bam
samtools index rg_with_tab.bam
samtools index softclip.bam
samtools index tag_bug.bam
samtools index test_mapped_unmapped.bam
samtools index test_query_position.bam
samtools index test_unaligned.bam
samtools view --no-PG -Co ex1.cram -T ex1.fa ex1.sam
samtools view --no-PG -Co ex2.cram -T ex1.fa ex2.sam
samtools view --no-PG -Co ex3.cram -T ex1.fa ex3.sam
samtools index ex1.cram
samtools index ex2.cram
samtools index ex3.cram
cp ex1.bam example_bai.bam
samtools index example_bai.bam
mv example_bai.bam.bai example_bai.bai
dd if=ex2.bam of=ex2_truncated.bam bs=$((`wc -c < ex2.bam`-512)) count=1
1+0 records in
1+0 records out
122288 bytes (122 kB, 119 KiB) copied, 0.000339643 s, 360 MB/s
(bgzip -d < ex2.bam; printf '\37\0\0\0\1\0\0\0') | bgzip > ex2_corrupt.bam
grep "^@" ex2.sam | samtools view --no-PG -bo empty.bam -
samtools index empty.bam
cp ex1.bam explicit_index.bam
cp ex1.cram explicit_index.cram
gzip < faidx_empty_seq.fq > faidx_empty_seq.fq.gz
bgzip < ex1.fa > ex1.fa.gz
samtools faidx ex1.fa.gz
cp ex1.bam ex1_csi.bam
samtools index -c ex1_csi.bam
touch all.stamp
rm with_md.sam
make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
cd tests/cbcf_data && /usr/bin/make all
make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
bgzip < example_vcf40.vcf > example_vcf40.vcf.gz
tabix -f -p vcf example_vcf40.vcf.gz    # create tbi index
bcftools index -f example_vcf40.vcf.gz  # create csi index
bgzip < example_vcf42.vcf > example_vcf42.vcf.gz
tabix -f -p vcf example_vcf42.vcf.gz    # create tbi index
bcftools index -f example_vcf42.vcf.gz  # create csi index
bgzip < example_vcf42_only_header.vcf > example_vcf42_only_header.vcf.gz
tabix -f -p vcf example_vcf42_only_header.vcf.gz    # create tbi index
bcftools index -f example_vcf42_only_header.vcf.gz  # create csi index
bgzip < example_vcf42_withcontigs.vcf > example_vcf42_withcontigs.vcf.gz
tabix -f -p vcf example_vcf42_withcontigs.vcf.gz    # create tbi index
bcftools index -f example_vcf42_withcontigs.vcf.gz  # create csi index
bgzip < example_vcf43.vcf > example_vcf43.vcf.gz
tabix -f -p vcf example_vcf43.vcf.gz    # create tbi index
bcftools index -f example_vcf43.vcf.gz  # create csi index
bgzip < example_vcf43_with_utf8.vcf > example_vcf43_with_utf8.vcf.gz
tabix -f -p vcf example_vcf43_with_utf8.vcf.gz    # create tbi index
bcftools index -f example_vcf43_with_utf8.vcf.gz  # create csi index
bgzip < gnomad.vcf > gnomad.vcf.gz
tabix -f -p vcf gnomad.vcf.gz    # create tbi index
bcftools index -f gnomad.vcf.gz  # create csi index
bgzip < gnomad_fixed.vcf > gnomad_fixed.vcf.gz
tabix -f -p vcf gnomad_fixed.vcf.gz    # create tbi index
bcftools index -f gnomad_fixed.vcf.gz  # create csi index
bgzip < missing_genotypes.vcf > missing_genotypes.vcf.gz
tabix -f -p vcf missing_genotypes.vcf.gz    # create tbi index
bcftools index -f missing_genotypes.vcf.gz  # create csi index
bcftools view -O b example_vcf40.vcf.gz -o example_vcf40.bcf
bcftools index -f example_vcf40.bcf
bcftools view -O b example_vcf42.vcf.gz -o example_vcf42.bcf
bcftools index -f example_vcf42.bcf
bcftools view -O b example_vcf42_only_header.vcf.gz -o example_vcf42_only_header.bcf
bcftools index -f example_vcf42_only_header.bcf
bcftools view -O b example_vcf42_withcontigs.vcf.gz -o example_vcf42_withcontigs.bcf
bcftools index -f example_vcf42_withcontigs.bcf
bcftools view -O b example_vcf43.vcf.gz -o example_vcf43.bcf
bcftools index -f example_vcf43.bcf
bcftools view -O b example_vcf43_with_utf8.vcf.gz -o example_vcf43_with_utf8.bcf
bcftools index -f example_vcf43_with_utf8.bcf
bcftools view -O b gnomad.vcf.gz -o gnomad.bcf
bcftools index -f gnomad.bcf
bcftools view -O b gnomad_fixed.vcf.gz -o gnomad_fixed.bcf
[W::bcf_hdr_check_sanity] PL should be declared as Number=G
bcftools index -f gnomad_fixed.bcf
[W::bcf_hdr_check_sanity] PL should be declared as Number=G
bcftools view -O b missing_genotypes.vcf.gz -o missing_genotypes.bcf
bcftools index -f missing_genotypes.bcf
touch all.stamp
make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
dh_auto_test
I: pybuild base:311: cd /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build; python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13
cachedir: .pytest_cache
rootdir: /build/reproducible-path/python-pysam-0.23.0+ds
configfile: setup.cfg
plugins: typeguard-4.4.2
collecting ... collected 960 items / 1 skipped

tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testStrOfEmptyRead PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate2 PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQual PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateTlen PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_mapped_reads_are_updated PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_unmapped_reads_ignore_length PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_equivalence_matches_only_and_with_seq PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_1character_md PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_bad_type_md PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_hard_clipping PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_lowercase_md PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_match_mismatch PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_via_cigarstring PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_with_seq PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip_reference PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_soft_clipping PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_uppercase_md PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_with_malformed_MD_tag PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_header_accessible PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_query_length PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_read_length PASSED
tests/AlignedSegment_test.py::TestAlignedSegment::test_query_length_is_limited PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_asterisk PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_chromosome PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_none PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_not_be_set_to_unknown_chromosome PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_chromosome PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing_without_header PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_without_header PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_not_be_set_to_unknown_chromosome PASSED
tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_asterisk PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_chromosome PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_none PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_not_be_set_to_unknown_chromosome PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_chromosome PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_equal PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing_without_header PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_without_header PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_not_be_set_to_unknown_chromosome PASSED
tests/AlignedSegment_test.py::TestNextTidMapping::test_next_unmapped_tid_is_asterisk_in_output PASSED
tests/AlignedSegment_test.py::TestCigar::testCigar PASSED
tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED
tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED
tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED
tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED
tests/AlignedSegment_test.py::TestBaseModifications::testDouble PASSED
tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED
tests/AlignedSegment_test.py::TestBaseModifications::testMulti PASSED
tests/AlignedSegment_test.py::TestBaseModifications::testOrient PASSED
tests/AlignedSegment_test.py::TestTags::testAddTags PASSED
tests/AlignedSegment_test.py::TestTags::testAddTagsType PASSED
tests/AlignedSegment_test.py::TestTags::testArrayTags PASSED
tests/AlignedSegment_test.py::TestTags::testEmptyTag PASSED
tests/AlignedSegment_test.py::TestTags::testLongTags PASSED
tests/AlignedSegment_test.py::TestTags::testMDTagComplex PASSED
tests/AlignedSegment_test.py::TestTags::testMDTagDeletions PASSED
tests/AlignedSegment_test.py::TestTags::testMDTagInsertions PASSED
tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED
tests/AlignedSegment_test.py::TestTags::testMDTagRefSkipping PASSED
tests/AlignedSegment_test.py::TestTags::testMDTagSoftClipping PASSED
tests/AlignedSegment_test.py::TestTags::testMissingTag PASSED
tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED
tests/AlignedSegment_test.py::TestTags::testNegativeIntegersWrittenToFile PASSED
tests/AlignedSegment_test.py::TestTags::testSetTag PASSED
tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED
tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED
tests/AlignedSegment_test.py::TestCopy::testCopy PASSED
tests/AlignedSegment_test.py::TestCopy::testDeepCopy PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_invalid_value_type PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_A PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_C PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_H PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_I PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_S PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_a PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_automated_type_detection PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_c PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_d PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_f PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_i PASSED
tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_s PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_A PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_C PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_H PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_I PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_S PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_a PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_automated_type_detection PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_c PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_d PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_f PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED
tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_s PASSED
tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED
tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED
tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED
tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED
tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED
tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED
tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED
tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED
tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED
tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED
tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED
tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED
tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED
tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED
tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED
tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED
tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED
tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED
tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_m2fpmzsy'
PASSED
tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED
tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED
tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575
[E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_st2hd78f'
PASSED
tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED
tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED
tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED
tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED
tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED
tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED
tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testTags PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED
tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED
tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED
tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED
tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED
tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED
tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED
tests/AlignmentFile_test.py::TestIO::testCRAM2BAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIO::testCRAM2SAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED
tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED
tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED
tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED
tests/AlignmentFile_test.py::TestIO::testHead PASSED
tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED
tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED
tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED
tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED
tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED
tests/AlignmentFile_test.py::TestIO::testSAM2CRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED
tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED
tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED
tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED
tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED
tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED
tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED
tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED
tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED
tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED
tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED
tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory
PASSED
tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED
tests/AlignmentFile_test.py::TestAutoDetect::testCRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED
tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED
tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED
tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED
tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED
tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED
tests/AlignmentFile_test.py::TestClipping::testClipping PASSED
tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED
tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED
tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED
tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED
tests/AlignmentFile_test.py::TestContextManager::testManager PASSED
tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED
tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED
tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED
tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory
[E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory
[E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory
[E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory
PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED
tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED
tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED
tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED
tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED
tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED
tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED
tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED
tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED
tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED
tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED
tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED
tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED
tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED
tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED
tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094
[E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes
PASSED
tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED
tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED
tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED
tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED
tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED
tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
[W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused
PASSED
tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED
tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED
tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED
tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED
tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED
tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED
tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED
tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED
tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED
tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED
tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED
tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED
tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED
tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED
tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED
tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED
tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED
tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED
tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory
PASSED
tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory
PASSED
tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED
tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM [W::hts_idx_load3] The index file is older than the data file: /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/pysam_data/ex1.bam.bai
PASSED
tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED
tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED
tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED
tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED
tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED
tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED
tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED
tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED
tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED
tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED
tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED
tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED
tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED
tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G
PASSED
tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED
tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED
tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED
tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED
tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory
PASSED
tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory
PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED
tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED
tests/VariantFile_test.py::TestHeader::testIterator PASSED
tests/VariantFile_test.py::TestHeader::testStr PASSED
tests/VariantFile_test.py::TestParsing::testAlleles PASSED
tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED
tests/VariantFile_test.py::TestParsing::testAlt PASSED
tests/VariantFile_test.py::TestParsing::testChrom PASSED
tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED
tests/VariantFile_test.py::TestParsing::testFilter PASSED
tests/VariantFile_test.py::TestParsing::testFormat PASSED
tests/VariantFile_test.py::TestParsing::testId PASSED
tests/VariantFile_test.py::TestParsing::testInfo PASSED
tests/VariantFile_test.py::TestParsing::testPos PASSED
tests/VariantFile_test.py::TestParsing::testQual PASSED
tests/VariantFile_test.py::TestParsing::testRef PASSED
tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED
tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED
tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED
tests/VariantFile_test.py::TestParsing::testStart PASSED
tests/VariantFile_test.py::TestParsing::testStop PASSED
tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED
tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED
tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED
tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED
tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED
tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED
tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED
tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
(0, 0)
PASSED
tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED
tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_3p40yha6.bcf'
PASSED
tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED
tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED
tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED
tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED
tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED
tests/VariantRecord_test.py::test_set_sample_alleles PASSED
tests/VariantRecord_test.py::test_repeated_new_record PASSED
tests/compile_test.py::test_bam SKIPPED (no pyximport)
tests/compile_test.py::test_gtf SKIPPED (no pyximport)
tests/faidx_test.py::TestFastaFile::testFetch PASSED
tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED
tests/faidx_test.py::TestFastaFile::testLength PASSED
tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED
tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED
tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED
tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED
tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED
tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED
tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED
tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED
tests/faidx_test.py::TestFastxFileFastq::testManager PASSED
tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED
tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED
tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED
tests/faidx_test.py::TestFastqFileFastq::testManager PASSED
tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED
tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED
tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED
tests/faidx_test.py::TestFastxFileFasta::testManager PASSED
tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED
tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED
tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED
tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED
tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED
tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED
tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED
tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED
tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED
tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED
tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED
tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED
tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED
tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED
tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED
tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED
tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED
tests/samtools_test.py::SamtoolsTest::testStatements PASSED
tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...)
tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED
tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED
tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED
tests/samtools_test.py::TestReturnType::testReturnValueData PASSED
tests/samtools_test.py::TestReturnType::testReturnValueString PASSED
tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED
tests/samtools_test.py::StdoutTest::testSaveStdout PASSED
tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED
tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED
tests/samtools_test.py::PysamTest::testStatements PASSED
tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...)
tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED
tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED
tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED
tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED
tests/tabix_test.py::TestCompression::testCompression PASSED
tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED
tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED
tests/tabix_test.py::TestCompressionSam::testCompression PASSED
tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED
tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED
tests/tabix_test.py::TestCompressionBed::testCompression PASSED
tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED
tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED
tests/tabix_test.py::TestCompressionVCF::testCompression PASSED
tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED
tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED
tests/tabix_test.py::TestGZFile::testAll PASSED
tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED
tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED
tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED
tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED
tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED
tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED
tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED
tests/tabix_test.py::TestIterationWithComments::testAll PASSED
tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED
tests/tabix_test.py::TestIterationWithComments::testHeader PASSED
tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED
tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED
tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED
tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED
tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED
tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED
tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED
tests/tabix_test.py::TestIterationWithComments::testReopening PASSED
tests/tabix_test.py::TestIterators::testClosedFile PASSED
tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED
tests/tabix_test.py::TestIterators::testIteration PASSED
tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED
tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED
tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED
tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED
tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED
tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED
tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED
tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED
tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED
tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED
tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED
tests/tabix_test.py::TestBed::testRead PASSED
tests/tabix_test.py::TestBed::testWrite PASSED
tests/tabix_test.py::TestUnicode::testFromTabix PASSED
tests/tabix_test.py::TestUnicode::testFromVCF PASSED
tests/tabix_test.py::TestVCFFromTabix::testRead PASSED
tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED
tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED
tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED
tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED
tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED
tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED
tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting [W::bcf_hdr_check_sanity] GL should be declared as Number=G
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs:
	#CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO

PASSED
tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED
tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED
tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g"
[W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR"
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g"
[W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR"
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String
[W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String
[W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0
[W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.)
PASSED
tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED
tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED
tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED
tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED
tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED
tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED
tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED
tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED
tests/tabix_test.py::TestMultipleIterators::testScope PASSED
tests/tabix_test.py::TestContextManager::testManager PASSED
tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED
tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED
tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED
tests/tabixproxies_test.py::TestParser::testCopy PASSED
tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED
tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED
tests/tabixproxies_test.py::TestParser::testRead PASSED
tests/tabixproxies_test.py::TestParser::testUnset PASSED
tests/tabixproxies_test.py::TestParser::testWrite PASSED
tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED
tests/tabixproxies_test.py::TestGTF::testCopy PASSED
tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED
tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED
tests/tabixproxies_test.py::TestGTF::testRead PASSED
tests/tabixproxies_test.py::TestGTF::testUnset PASSED
tests/tabixproxies_test.py::TestGTF::testWrite PASSED
tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED
tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED
tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED
tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED
tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED
tests/tabixproxies_test.py::TestGFF3::testCopy PASSED
tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED
tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED
tests/tabixproxies_test.py::TestGFF3::testRead PASSED
tests/tabixproxies_test.py::TestGFF3::testUnset PASSED
tests/tabixproxies_test.py::TestGFF3::testWrite PASSED
tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED
tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED
tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED
tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED
tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED
tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED
tests/test_samtools_python.py::test_bedcov_split_lines PASSED
tests/test_samtools_python.py::test_idxstats_parse PASSED
tests/test_samtools_python.py::test_bedcov PASSED

======================= 947 passed, 14 skipped in 57.41s =======================
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam 
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is external
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
running egg_info
writing pysam.egg-info/PKG-INFO
writing dependency_links to pysam.egg-info/dependency_links.txt
writing top-level names to pysam.egg-info/top_level.txt
reading manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'KNOWN_BUGS'
warning: no files found matching 'THANKS'
warning: no files found matching 'win32/*.[ch]'
warning: no files found matching 'htslib/LICENSE'
warning: no files found matching 'htslib/README'
warning: no files found matching '*.[ch]' under directory 'htslib'
warning: no previously-included files found matching 'htslib/*config*.h'
warning: no files found matching 'htslib/configure.ac'
warning: no files found matching 'htslib/m4/*.m4'
warning: no files found matching 'htslib/*.in'
warning: no files found matching 'htslib/configure'
warning: no files found matching 'htslib/config.guess'
warning: no files found matching 'htslib/config.sub'
warning: no files found matching 'htslib/version.sh'
warning: no files found matching 'htslib/Makefile'
warning: no files found matching 'htslib/*.mk'
warning: no previously-included files found matching 'htslib/config.mk'
warning: no previously-included files found matching 'htslib/htscodecs.mk'
adding license file 'COPYING'
adding license file 'AUTHORS'
writing manifest file 'pysam.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'pysam.include.samtools.lz4' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'pysam.include.samtools.lz4' to be distributed and are
        already explicitly excluding 'pysam.include.samtools.lz4' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam
copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools
copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools
running build_ext
creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension
running install_lib
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/Pileup.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/bcftools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/config.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/samtools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools
creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-arm-linux-gnueabi.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/version.py to version.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/Pileup.py to Pileup.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/bcftools.py to bcftools.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/config.py to config.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/utils.py to utils.cpython-313.pyc
byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/samtools.py to samtools.cpython-313.pyc
running install_egg_info
Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam-0.23.0.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds'
cd tests/pysam_data && /usr/bin/make clean
make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \
all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \
ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \
with_md.sam.gz \
*.fq.gz
make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data'
cd tests/cbcf_data && /usr/bin/make clean
make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf
make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data'
find . -name "*.pyc" -delete
find . -name "*.pyxbldc" -delete
find . -name "tmp_*.bam" -delete
find . -name "*.bai*" -delete
find . -name "*.cram*" -delete
find . -name "pysam_uncompressed.bam" -delete
rm -rf	tests/pysam_test_work \
	tests/example_htslib.gtf.gz.tbi \
	tests/log.txt \
	tests/test.bam \
	tests/_compile_test.c \
	tests/pysam_ex2.sam \
	tests/__pycache__ \
	pysam/calignmentfile.c \
	pysam/cbcf.c \
	tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \
	tests/pysam_data/ex1.fa.gz \
	tests/pysam_data/ex1.fa.gz.gzi \
	tests/pysam_data/ex1_csi.bam.csi
rm -rf .pytest_cache/
dh_install -Xtest.gtf.gz
find debian -name log.txt -delete
find debian -name LICENSE -delete
make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_lintian -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-313-arm-linux-gnueabi.so: DWARF compression not beneficial - old size 1498319 new size 1513735
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux.so.3.usr-is-merged
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pysam' in '../python3-pysam_0.23.0+ds-1+b1_armel.deb'.
dpkg-deb: building package 'python3-pysam-dbgsym' in '../python3-pysam-dbgsym_0.23.0+ds-1+b1_armel.deb'.
 dpkg-genbuildinfo --build=any -O../python-pysam_0.23.0+ds-1+b1_armel.buildinfo
 dpkg-genchanges --build=any -O../python-pysam_0.23.0+ds-1+b1_armel.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2025-07-24T04:25:50Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                      Thu, 24 Jul 2025 04:25:51 +0000 |
+------------------------------------------------------------------------------+


python-pysam_0.23.0+ds-1+b1_armel.changes:
------------------------------------------

Format: 1.8
Date: Thu, 27 Feb 2025 04:30:23 +0000
Source: python-pysam (0.23.0+ds-1)
Binary: python3-pysam python3-pysam-dbgsym
Binary-Only: yes
Architecture: armel
Version: 0.23.0+ds-1+b1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: arm Build Daemon (arm-conova-02) <buildd_arm64-arm-conova-02@buildd.debian.org>
Description:
 python3-pysam - interface for the SAM/BAM sequence alignment and mapping format (
Changes:
 python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armel; no source changes.
   * Rebuild with Python 3.13 only
Checksums-Sha1:
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+------------------------------------------------------------------------------+
| Buildinfo                                    Thu, 24 Jul 2025 04:25:52 +0000 |
+------------------------------------------------------------------------------+

Format: 1.0
Source: python-pysam (0.23.0+ds-1)
Binary: python3-pysam python3-pysam-dbgsym
Architecture: armel
Version: 0.23.0+ds-1+b1
Binary-Only-Changes:
 python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armel; no source changes.
   * Rebuild with Python 3.13 only
 .
  -- arm Build Daemon (arm-conova-02) <buildd_arm64-arm-conova-02@buildd.debian.org>  Thu, 27 Feb 2025 04:30:23 +0000
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Build-Origin: Debian
Build-Architecture: armel
Build-Date: Thu, 24 Jul 2025 04:25:50 +0000
Build-Path: /build/reproducible-path/python-pysam-0.23.0+ds
Installed-Build-Depends:
 autoconf (= 2.72-3),
 automake (= 1:1.17-3),
 autopoint (= 0.23.1-1),
 autotools-dev (= 20220109.1),
 base-files (= 13.6),
 base-passwd (= 3.6.6),
 bash (= 5.2.37-1.1),
 bcftools (= 1.21-1),
 binutils (= 2.44-2),
 binutils-arm-linux-gnueabi (= 2.44-2),
 binutils-common (= 2.44-2),
 bsdextrautils (= 2.40.4-5),
 bsdutils (= 1:2.40.4-5),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 comerr-dev (= 2.1-1.47.2-1),
 coreutils (= 9.5-1),
 cpp (= 4:14.2.0-1),
 cpp-14 (= 14.2.0-17),
 cpp-14-arm-linux-gnueabi (= 14.2.0-17),
 cpp-arm-linux-gnueabi (= 4:14.2.0-1),
 cython3 (= 3.0.11+dfsg-2),
 dash (= 0.5.12-12),
 debconf (= 1.5.89),
 debhelper (= 13.24.1),
 debianutils (= 5.21),
 dh-autoreconf (= 20),
 dh-python (= 6.20250108),
 dh-strip-nondeterminism (= 1.14.1-2),
 diffutils (= 1:3.10-2),
 dpkg (= 1.22.15),
 dpkg-dev (= 1.22.15),
 dwz (= 0.15-1+b3),
 file (= 1:5.45-3+b1),
 findutils (= 4.10.0-3),
 g++ (= 4:14.2.0-1),
 g++-14 (= 14.2.0-17),
 g++-14-arm-linux-gnueabi (= 14.2.0-17),
 g++-arm-linux-gnueabi (= 4:14.2.0-1),
 gcc (= 4:14.2.0-1),
 gcc-14 (= 14.2.0-17),
 gcc-14-arm-linux-gnueabi (= 14.2.0-17),
 gcc-14-base (= 14.2.0-17),
 gcc-arm-linux-gnueabi (= 4:14.2.0-1),
 gettext (= 0.23.1-1),
 gettext-base (= 0.23.1-1),
 grep (= 3.11-4),
 groff-base (= 1.23.0-7),
 gzip (= 1.13-1),
 hostname (= 3.25),
 init-system-helpers (= 1.68),
 intltool-debian (= 0.35.0+20060710.6),
 krb5-multidev (= 1.21.3-4),
 libacl1 (= 2.3.2-2+b1),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.2.0-17),
 libatomic1 (= 14.2.0-17),
 libattr1 (= 1:2.5.2-3),
 libaudit-common (= 1:4.0.2-2),
 libaudit1 (= 1:4.0.2-2+b1),
 libbinutils (= 2.44-2),
 libblkid1 (= 2.40.4-5),
 libbrotli-dev (= 1.1.0-2+b6),
 libbrotli1 (= 1.1.0-2+b6),
 libbz2-1.0 (= 1.0.8-6),
 libbz2-dev (= 1.0.8-6),
 libc-bin (= 2.40-7),
 libc-dev-bin (= 2.40-7),
 libc6 (= 2.40-7),
 libc6-dev (= 2.40-7),
 libcap-ng0 (= 0.8.5-4),
 libcap2 (= 1:2.73-4),
 libcc1-0 (= 14.2.0-17),
 libcom-err2 (= 1.47.2-1),
 libcrypt-dev (= 1:4.4.38-1),
 libcrypt1 (= 1:4.4.38-1),
 libctf-nobfd0 (= 2.44-2),
 libctf0 (= 2.44-2),
 libcurl3t64-gnutls (= 8.12.1-3),
 libcurl4-gnutls-dev (= 8.12.1-3),
 libdb5.3t64 (= 5.3.28+dfsg2-9),
 libdebconfclient0 (= 0.277),
 libdebhelper-perl (= 13.24.1),
 libdeflate-dev (= 1.23-1+b1),
 libdeflate0 (= 1.23-1+b1),
 libdpkg-perl (= 1.22.15),
 libelf1t64 (= 0.192-4),
 libevent-2.1-7t64 (= 2.1.12-stable-10+b1),
 libexpat1 (= 2.6.4-1),
 libexpat1-dev (= 2.6.4-1),
 libffi8 (= 3.4.7-1),
 libfile-stripnondeterminism-perl (= 1.14.1-2),
 libgcc-14-dev (= 14.2.0-17),
 libgcc-s1 (= 14.2.0-17),
 libgdbm-compat4t64 (= 1.24-2),
 libgdbm6t64 (= 1.24-2),
 libgmp-dev (= 2:6.3.0+dfsg-3),
 libgmp10 (= 2:6.3.0+dfsg-3),
 libgmpxx4ldbl (= 2:6.3.0+dfsg-3),
 libgnutls-dane0t64 (= 3.8.9-2),
 libgnutls-openssl27t64 (= 3.8.9-2),
 libgnutls28-dev (= 3.8.9-2),
 libgnutls30t64 (= 3.8.9-2),
 libgomp1 (= 14.2.0-17),
 libgssapi-krb5-2 (= 1.21.3-4),
 libgssrpc4t64 (= 1.21.3-4),
 libhogweed6t64 (= 3.10.1-1),
 libhts-dev (= 1.21+ds-1),
 libhts3t64 (= 1.21+ds-1),
 libhtscodecs2 (= 1.6.1-2),
 libicu72 (= 72.1-6),
 libidn2-0 (= 2.3.7-2+b1),
 libidn2-dev (= 2.3.7-2+b1),
 libisl23 (= 0.27-1),
 libjansson4 (= 2.14-2+b3),
 libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
 libjs-sphinxdoc (= 8.1.3-5),
 libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
 libk5crypto3 (= 1.21.3-4),
 libkadm5clnt-mit12 (= 1.21.3-4),
 libkadm5srv-mit12 (= 1.21.3-4),
 libkdb5-10t64 (= 1.21.3-4),
 libkeyutils1 (= 1.6.3-4),
 libkrb5-3 (= 1.21.3-4),
 libkrb5-dev (= 1.21.3-4),
 libkrb5support0 (= 1.21.3-4),
 libldap-dev (= 2.6.9+dfsg-1),
 libldap2 (= 2.6.9+dfsg-1),
 liblzma-dev (= 5.6.3-1+b1),
 liblzma5 (= 5.6.3-1+b1),
 libmagic-mgc (= 1:5.45-3+b1),
 libmagic1t64 (= 1:5.45-3+b1),
 libmd0 (= 1.1.0-2+b1),
 libmount1 (= 2.40.4-5),
 libmpc3 (= 1.3.1-1+b3),
 libmpfr6 (= 4.2.1-1+b2),
 libncurses6 (= 6.5+20250216-1),
 libncursesw6 (= 6.5+20250216-1),
 libnettle8t64 (= 3.10.1-1),
 libnghttp2-14 (= 1.64.0-1),
 libnghttp2-dev (= 1.64.0-1),
 libnghttp3-9 (= 1.6.0-2),
 libnghttp3-dev (= 1.6.0-2),
 libngtcp2-16 (= 1.9.1-1),
 libngtcp2-crypto-gnutls-dev (= 1.9.1-1),
 libngtcp2-crypto-gnutls8 (= 1.9.1-1),
 libngtcp2-dev (= 1.9.1-1),
 libp11-kit-dev (= 0.25.5-3),
 libp11-kit0 (= 0.25.5-3),
 libpam-modules (= 1.7.0-3),
 libpam-modules-bin (= 1.7.0-3),
 libpam-runtime (= 1.7.0-3),
 libpam0g (= 1.7.0-3),
 libpcre2-8-0 (= 10.45-1),
 libperl5.40 (= 5.40.1-2),
 libpipeline1 (= 1.5.8-1),
 libpkgconf3 (= 1.8.1-4),
 libpsl-dev (= 0.21.2-1.1+b1),
 libpsl5t64 (= 0.21.2-1.1+b1),
 libpython3-all-dev (= 3.13.2-1),
 libpython3-dev (= 3.13.2-1),
 libpython3-stdlib (= 3.13.2-1),
 libpython3.13 (= 3.13.2-1),
 libpython3.13-dev (= 3.13.2-1),
 libpython3.13-minimal (= 3.13.2-1),
 libpython3.13-stdlib (= 3.13.2-1),
 libreadline8t64 (= 8.2-6),
 librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5),
 libsasl2-2 (= 2.1.28+dfsg1-8+b1),
 libsasl2-modules-db (= 2.1.28+dfsg1-8+b1),
 libseccomp2 (= 2.5.5-2),
 libselinux1 (= 3.8-4),
 libsframe1 (= 2.44-2),
 libsmartcols1 (= 2.40.4-5),
 libsqlite3-0 (= 3.46.1-1),
 libssh2-1-dev (= 1.11.1-1),
 libssh2-1t64 (= 1.11.1-1),
 libssl-dev (= 3.4.1-1),
 libssl3t64 (= 3.4.1-1),
 libstdc++-14-dev (= 14.2.0-17),
 libstdc++6 (= 14.2.0-17),
 libsystemd0 (= 257.3-1),
 libtasn1-6 (= 4.20.0-2),
 libtasn1-6-dev (= 4.20.0-2),
 libtinfo6 (= 6.5+20250216-1),
 libtool (= 2.5.4-3),
 libubsan1 (= 14.2.0-17),
 libuchardet0 (= 0.0.8-1+b2),
 libudev1 (= 257.3-1),
 libunbound8 (= 1.22.0-1+b1),
 libunistring5 (= 1.3-1),
 libuuid1 (= 2.40.4-5),
 libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
 libzstd-dev (= 1.5.6+dfsg-2),
 libzstd1 (= 1.5.6+dfsg-2),
 linux-libc-dev (= 6.12.16-1),
 m4 (= 1.4.19-5),
 make (= 4.4.1-1),
 man-db (= 2.13.0-1),
 mawk (= 1.3.4.20250131-1),
 media-types (= 12.0.0),
 ncurses-base (= 6.5+20250216-1),
 ncurses-bin (= 6.5+20250216-1),
 netbase (= 6.4),
 nettle-dev (= 3.10.1-1),
 openssl-provider-legacy (= 3.4.1-1),
 patch (= 2.7.6-7),
 perl (= 5.40.1-2),
 perl-base (= 5.40.1-2),
 perl-modules-5.40 (= 5.40.1-2),
 pkgconf (= 1.8.1-4),
 pkgconf-bin (= 1.8.1-4),
 po-debconf (= 1.0.21+nmu1),
 python3 (= 3.13.2-1),
 python3-all (= 3.13.2-1),
 python3-all-dev (= 3.13.2-1),
 python3-autocommand (= 2.2.2-3),
 python3-dev (= 3.13.2-1),
 python3-inflect (= 7.3.1-2),
 python3-iniconfig (= 1.1.1-2),
 python3-jaraco.context (= 6.0.0-1),
 python3-jaraco.functools (= 4.1.0-1),
 python3-jaraco.text (= 4.0.0-1),
 python3-minimal (= 3.13.2-1),
 python3-more-itertools (= 10.6.0-1),
 python3-packaging (= 24.2-1),
 python3-pkg-resources (= 75.8.0-1),
 python3-pluggy (= 1.5.0-1),
 python3-pytest (= 8.3.4-1),
 python3-setuptools (= 75.8.0-1),
 python3-typeguard (= 4.4.2-1),
 python3-typing-extensions (= 4.12.2-2),
 python3-zipp (= 3.21.0-1),
 python3.13 (= 3.13.2-1),
 python3.13-dev (= 3.13.2-1),
 python3.13-minimal (= 3.13.2-1),
 readline-common (= 8.2-6),
 rpcsvc-proto (= 1.4.3-1),
 samtools (= 1.21-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.24),
 sysvinit-utils (= 3.14-3),
 tabix (= 1.21+ds-1),
 tar (= 1.35+dfsg-3.1),
 tzdata (= 2025a-2),
 util-linux (= 2.40.4-5),
 xz-utils (= 5.6.3-1+b1),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="parallel=8"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1740630623"


+------------------------------------------------------------------------------+
| Package contents                             Thu, 24 Jul 2025 04:25:52 +0000 |
+------------------------------------------------------------------------------+


python3-pysam-dbgsym_0.23.0+ds-1+b1_armel.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 9203352 bytes: control archive=1204 bytes.
     914 bytes,    12 lines      control
    1469 bytes,    14 lines      md5sums
 Package: python3-pysam-dbgsym
 Source: python-pysam (0.23.0+ds-1)
 Version: 0.23.0+ds-1+b1
 Auto-Built-Package: debug-symbols
 Architecture: armel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 9715
 Depends: python3-pysam (= 0.23.0+ds-1+b1)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-pysam
 Build-Ids: 09a1806fb6b15f927d4cbbe4bfd2a897a5bad9fe 150d12f3c417abb370c1132083b9338ff4c0719c 360a4c948ecf59dcbf6cd607794ae2152adc4948 4265616071a79cec56130df842a19bff4b791898 5c01cd6398c9a5f183178a97fb278eff8eb072f3 5ebfe27b18454727d8650b86581640c212c8df83 69704d3dea8517458132002367652e6f5b30696e 721f214d0c746bd156c0668e2a6fdead96daa377 78b80ad47c0b7a07f0fcb23c4638c68931d65796 d6343ad97a8870d97740e92079fe788cdac43170 e723af0bca8d7089111a92dfc983bf6f53c60365 f04f93660866245dfd9b8dca18257eee8692ff91 fc5ce42b69586a0bbe77935f362240a6302017be

drwxr-xr-x root/root         0 2025-02-27 04:30 ./
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drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/
drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.build-id/09/
-rw-r--r-- root/root    395168 2025-02-27 04:30 ./usr/lib/debug/.build-id/09/a1806fb6b15f927d4cbbe4bfd2a897a5bad9fe.debug
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drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.build-id/5c/
-rw-r--r-- root/root   1110376 2025-02-27 04:30 ./usr/lib/debug/.build-id/5c/01cd6398c9a5f183178a97fb278eff8eb072f3.debug
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-rw-r--r-- root/root     83936 2025-02-27 04:30 ./usr/lib/debug/.build-id/5e/bfe27b18454727d8650b86581640c212c8df83.debug
drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.build-id/69/
-rw-r--r-- root/root   1395780 2025-02-27 04:30 ./usr/lib/debug/.build-id/69/704d3dea8517458132002367652e6f5b30696e.debug
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drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root    369132 2025-02-27 04:30 ./usr/lib/debug/.build-id/78/b80ad47c0b7a07f0fcb23c4638c68931d65796.debug
drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.build-id/d6/
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drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.build-id/e7/
-rw-r--r-- root/root    541372 2025-02-27 04:30 ./usr/lib/debug/.build-id/e7/23af0bca8d7089111a92dfc983bf6f53c60365.debug
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drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.build-id/fc/
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drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/lib/debug/.dwz/arm-linux-gnueabi/
-rw-r--r-- root/root     38280 2025-02-27 04:30 ./usr/lib/debug/.dwz/arm-linux-gnueabi/python3-pysam.debug
drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/share/
drwxr-xr-x root/root         0 2025-02-27 04:30 ./usr/share/doc/
lrwxrwxrwx root/root         0 2025-02-27 04:30 ./usr/share/doc/python3-pysam-dbgsym -> python3-pysam


python3-pysam_0.23.0+ds-1+b1_armel.deb
--------------------------------------

 new Debian package, version 2.0.
 size 3401708 bytes: control archive=9300 bytes.
     716 bytes,    16 lines      control
   35382 bytes,   361 lines      md5sums
     273 bytes,    12 lines   *  postinst             #!/bin/sh
     386 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-pysam
 Source: python-pysam (0.23.0+ds-1)
 Version: 0.23.0+ds-1+b1
 Architecture: armel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 35007
 Depends: libc6 (>= 2.38), libhts3t64 (>= 1.21), zlib1g (>= 1:1.2.3.3), python3 (<< 3.14), python3 (>= 3.13~), python3:any
 Section: python
 Priority: optional
 Homepage: https://pysam.readthedocs.org/en/latest
 Description: interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  Pysam is a Python module for reading and manipulating Samfiles. It's a
  lightweight wrapper of the samtools C-API. Pysam also includes an interface
  for tabix.
  .
  This package installs the module for Python 3.

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+------------------------------------------------------------------------------+
| Post Build                                   Thu, 24 Jul 2025 04:25:54 +0000 |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                      Thu, 24 Jul 2025 04:25:54 +0000 |
+------------------------------------------------------------------------------+

Purging /build/reproducible-path
Not cleaning session: cloned chroot in use
size differs for python3-pysam_0.23.0+ds-1+b1_armel.deb

+------------------------------------------------------------------------------+
| Summary                                      Thu, 24 Jul 2025 04:25:56 +0000 |
+------------------------------------------------------------------------------+

Build Architecture: armel
Build Type: any
Build-Space: 197200
Build-Time: 461
Distribution: unstable
Host Architecture: armel
Install-Time: 6
Job: /srv/rebuilderd/tmp/rebuilderdaRUinG/inputs/python-pysam_0.23.0+ds-1.dsc
Machine Architecture: arm64
Package: python-pysam
Package-Time: 480
Source-Version: 0.23.0+ds-1
Space: 197200
Status: successful
Version: 0.23.0+ds-1+b1
--------------------------------------------------------------------------------
Finished at 2025-07-24T04:25:50Z
Build needed 00:08:00, 197200k disk space
build artifacts stored in /srv/rebuilderd/tmp/rebuilderdaRUinG/out
checking python3-pysam-dbgsym_0.23.0+ds-1+b1_armel.deb: size... sha1... sha256... md5... all OK
checking python3-pysam_0.23.0+ds-1+b1_armel.deb: