=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdSJpq6d/inputs/hmmer_3.4+dfsg-2+b2_armhf.buildinfo Source: hmmer Version: 3.4+dfsg-2 rebuilderd-worker node: codethink01-arm64 +------------------------------------------------------------------------------+ | Downloading sources Sat, 26 Jul 2025 01:47:43 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [168 kB] Get:2 https://deb.debian.org/debian sid InRelease [213 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 2s (10.5 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-2.dsc' hmmer_3.4+dfsg-2.dsc 2119 SHA256:28fa8e20c62b6fba8fcfd70c25bcc7d647fe47b871b10b132784660d61b2c413 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg.orig.tar.xz' hmmer_3.4+dfsg.orig.tar.xz 13297988 SHA256:87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-2.debian.tar.xz' hmmer_3.4+dfsg-2.debian.tar.xz 12792 SHA256:5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 hmmer_3.4+dfsg.orig.tar.xz 5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 hmmer_3.4+dfsg-2.debian.tar.xz 28fa8e20c62b6fba8fcfd70c25bcc7d647fe47b871b10b132784660d61b2c413 hmmer_3.4+dfsg-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sat, 26 Jul 2025 01:47:46 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdSJpq6d/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdSJpq6d/inputs/hmmer_3.4+dfsg-2+b2_armhf.buildinfo Rebuilding hmmer=3.4+dfsg-2 in /srv/rebuilderd/tmp/rebuilderdSJpq6d/inputs now. /srv/rebuilderd/tmp/rebuilderdSJpq6d/inputs/hmmer_3.4+dfsg-2+b2_armhf.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/hmmer-3.4+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid InRelease [205 kB] Get:2 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf Packages [9645 kB] Fetched 9850 kB in 1s (9329 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250406T210903Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libctf0 armhf 2.44-3 [61.6 kB] Fetched 61.6 kB in 0s (3563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplsdrvx5e/libctf0_2.44-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpython3-stdlib armhf 3.13.2-2 [10.1 kB] Fetched 10.1 kB in 0s (589 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplr9md_y_/libpython3-stdlib_3.13.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf mawk armhf 1.3.4.20250131-1 [131 kB] Fetched 131 kB in 0s (6986 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37bp1fyy/mawk_1.3.4.20250131-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf gettext armhf 0.23.1-1 [1560 kB] Fetched 1560 kB in 0s (52.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw6g131uu/gettext_0.23.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libzstd1 armhf 1.5.7+dfsg-1 [264 kB] Fetched 264 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_9bhdrh_/libzstd1_1.5.7+dfsg-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf python3 armhf 3.13.2-2 [28.1 kB] Fetched 28.1 kB in 0s (1698 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfeaxahgl/python3_3.13.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (33.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr0xozrst/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libmagic-mgc armhf 1:5.46-4 [337 kB] Fetched 337 kB in 0s (17.3 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-4_armhf.deb' to '/srv/rebuilderd/tmp/tmp7_zoygfs/libmagic-mgc_5.46-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpam0g armhf 1.7.0-3 [64.3 kB] Fetched 64.3 kB in 0s (3775 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt1vfjnkb/libpam0g_1.7.0-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libc-dev-bin armhf 2.41-6 [55.6 kB] Fetched 55.6 kB in 0s (3259 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp019ea34q/libc-dev-bin_2.41-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libcap2 armhf 1:2.75-4 [24.0 kB] Fetched 24.0 kB in 0s (1429 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpkcy2tl5y/libcap2_2.75-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1 [1440 B] Fetched 1440 B in 0s (115 kB/s) dpkg-name: info: moved 'gcc-arm-linux-gnueabihf_4%3a14.2.0-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpt5bql173/gcc-arm-linux-gnueabihf_14.2.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (3926 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5myxeq5w/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libc-bin armhf 2.41-6 [522 kB] Fetched 522 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi0zydjcz/libc-bin_2.41-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libacl1 armhf 2.3.2-2+b1 [30.0 kB] Fetched 30.0 kB in 0s (1779 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyi_a6jsc/libacl1_2.3.2-2+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf bsdutils armhf 1:2.41-3 [101 kB] Fetched 101 kB in 0s (5669 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.41-3_armhf.deb' to '/srv/rebuilderd/tmp/tmp5jpardv2/bsdutils_2.41-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf g++-14 armhf 14.2.0-19 [22.5 kB] Fetched 22.5 kB in 0s (1077 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz3rr5tk0/g++-14_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpython3.13-minimal armhf 3.13.2-3 [847 kB] Fetched 847 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp49tkfilo/libpython3.13-minimal_3.13.2-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf perl armhf 5.40.1-2 [267 kB] Fetched 267 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmv0h44ch/perl_5.40.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf xz-utils armhf 5.8.1-1 [657 kB] Fetched 657 kB in 0s (42.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0notbj9k/xz-utils_5.8.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-19 [9063 kB] Fetched 9063 kB in 0s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeci7wtzg/g++-14-arm-linux-gnueabihf_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libisl23 armhf 0.27-1 [517 kB] Fetched 517 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23ndta1q/libisl23_0.27-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libcrypt-dev armhf 1:4.4.38-1 [125 kB] Fetched 125 kB in 0s (6800 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_armhf.deb' to '/srv/rebuilderd/tmp/tmptwga8ba7/libcrypt-dev_4.4.38-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libgdbm6t64 armhf 1.24-2 [71.1 kB] Fetched 71.1 kB in 0s (4080 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwsso7ph8/libgdbm6t64_1.24-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf rpcsvc-proto armhf 1.4.3-1 [58.7 kB] Fetched 58.7 kB in 0s (3433 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqjb7ebk8/rpcsvc-proto_1.4.3-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libattr1 armhf 1:2.5.2-3 [22.0 kB] Fetched 22.0 kB in 0s (1228 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_armhf.deb' to '/srv/rebuilderd/tmp/tmpc9ow6ikc/libattr1_2.5.2-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf bzip2 armhf 1.0.8-6 [39.4 kB] Fetched 39.4 kB in 0s (2408 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmhjlwgiw/bzip2_1.0.8-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libc6 armhf 2.41-6 [2250 kB] Fetched 2250 kB in 0s (48.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwhkkl6m0/libc6_2.41-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libstdc++-14-dev armhf 14.2.0-19 [2380 kB] Fetched 2380 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0b40yet/libstdc++-14-dev_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf linux-libc-dev all 6.12.21-1 [2542 kB] Fetched 2542 kB in 0s (67.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5_l86hls/linux-libc-dev_6.12.21-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (1918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0le5eup6/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-19 [8238 kB] Fetched 8238 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90kr3oe3/cpp-14-arm-linux-gnueabihf_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libgcc-14-dev armhf 14.2.0-19 [768 kB] Fetched 768 kB in 0s (33.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn0e41yot/libgcc-14-dev_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf debhelper all 13.24.2 [919 kB] Fetched 919 kB in 0s (38.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpepqioq3a/debhelper_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf perl-base armhf 5.40.1-2 [1516 kB] Fetched 1516 kB in 0s (52.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6zhdwe8e/perl-base_5.40.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf m4 armhf 1.4.19-7 [272 kB] Fetched 272 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp81qq0wdz/m4_1.4.19-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf gcc armhf 4:14.2.0-1 [5140 B] Fetched 5140 B in 0s (317 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpg4xyby7h/gcc_14.2.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf gcc-14 armhf 14.2.0-19 [509 kB] Fetched 509 kB in 0s (24.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3kgkoug_/gcc-14_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (24.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6q9cr0lj/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libgcc-s1 armhf 14.2.0-19 [37.0 kB] Fetched 37.0 kB in 0s (1834 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7ss8jmc/libgcc-s1_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf man-db armhf 2.13.0-1 [1382 kB] Fetched 1382 kB in 0s (50.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgcxsbaj/man-db_2.13.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf sysvinit-utils armhf 3.14-4 [32.8 kB] Fetched 32.8 kB in 0s (2297 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxjmt284r/sysvinit-utils_3.14-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (2982 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm0e88zgq/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libuuid1 armhf 2.41-3 [36.2 kB] Fetched 36.2 kB in 0s (2082 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvfzbze59/libuuid1_2.41-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libsqlite3-0 armhf 3.46.1-2 [802 kB] Fetched 802 kB in 0s (34.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxysz7qap/libsqlite3-0_3.46.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf cpp armhf 4:14.2.0-1 [1572 B] Fetched 1572 B in 0s (95.1 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_armhf.deb' to '/srv/rebuilderd/tmp/tmplre8a13k/cpp_14.2.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libasan8 armhf 14.2.0-19 [2583 kB] Fetched 2583 kB in 0s (69.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkk0h_f_g/libasan8_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf gcc-14-base armhf 14.2.0-19 [49.4 kB] Fetched 49.4 kB in 0s (2945 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ndlx91p/gcc-14-base_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf findutils armhf 4.10.0-3 [687 kB] Fetched 687 kB in 0s (46.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp65nf7z3u/findutils_4.10.0-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf file armhf 1:5.46-4 [42.7 kB] Fetched 42.7 kB in 0s (2477 kB/s) dpkg-name: info: moved 'file_1%3a5.46-4_armhf.deb' to '/srv/rebuilderd/tmp/tmp4um7zmau/file_5.46-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libdebhelper-perl all 13.24.2 [90.9 kB] Fetched 90.9 kB in 0s (5138 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp416kqgyk/libdebhelper-perl_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpcre2-8-0 armhf 10.45-1 [259 kB] Fetched 259 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyrngozgp/libpcre2-8-0_10.45-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf tzdata all 2025b-1 [259 kB] Fetched 259 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7y60n7b_/tzdata_2025b-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf binutils armhf 2.44-3 [69.1 kB] Fetched 69.1 kB in 0s (4063 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp06tb7mxo/binutils_2.44-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (5852 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw6v9u6mw/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libubsan1 armhf 14.2.0-19 [1040 kB] Fetched 1040 kB in 0s (39.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjn199ov/libubsan1_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libsystemd0 armhf 257.4-9 [417 kB] Fetched 417 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdqsl6vla/libsystemd0_257.4-9_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq0qj9_xe/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libdebconfclient0 armhf 0.278 [10.2 kB] Fetched 10.2 kB in 0s (604 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzdmbs5ts/libdebconfclient0_0.278_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libbz2-1.0 armhf 1.0.8-6 [35.0 kB] Fetched 35.0 kB in 0s (2148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpii23xhis/libbz2-1.0_1.0.8-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf base-passwd armhf 3.6.7 [52.5 kB] Fetched 52.5 kB in 0s (3141 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwl5qeu6n/base-passwd_3.6.7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf liblastlog2-2 armhf 2.41-3 [27.6 kB] Fetched 27.6 kB in 0s (1689 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxurt41q/liblastlog2-2_2.41-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf ncurses-bin armhf 6.5+20250216-2 [429 kB] Fetched 429 kB in 0s (24.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph9mlil0t/ncurses-bin_6.5+20250216-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libmpc3 armhf 1.3.1-1+b3 [43.7 kB] Fetched 43.7 kB in 0s (2619 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1rl5z_63/libmpc3_1.3.1-1+b3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libsframe1 armhf 2.44-3 [75.8 kB] Fetched 75.8 kB in 0s (4469 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwvmb1_ds/libsframe1_2.44-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf python3-minimal armhf 3.13.2-2 [27.1 kB] Fetched 27.1 kB in 0s (1642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph91x7nm7/python3-minimal_3.13.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libunistring5 armhf 1.3-2 [441 kB] Fetched 441 kB in 0s (22.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzm6_zyt/libunistring5_1.3-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf tar armhf 1.35+dfsg-3.1 [794 kB] Fetched 794 kB in 0s (32.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3v3oewf6/tar_1.35+dfsg-3.1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libdpkg-perl all 1.22.18 [649 kB] Fetched 649 kB in 0s (29.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu4uxtsmh/libdpkg-perl_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpython3.13-stdlib armhf 3.13.2-3 [1827 kB] Fetched 1827 kB in 0s (57.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7oafuj9x/libpython3.13-stdlib_3.13.2-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf hostname armhf 3.25 [10.0 kB] Fetched 10.0 kB in 0s (590 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7f07218l/hostname_3.25_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx8fit38p/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf dpkg-dev all 1.22.18 [1338 kB] Fetched 1338 kB in 0s (48.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqnd0pna1/dpkg-dev_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (524 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_nan76p/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libcap-ng0 armhf 0.8.5-4+b1 [16.1 kB] Fetched 16.1 kB in 0s (936 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqqx17a3u/libcap-ng0_0.8.5-4+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libstdc++6 armhf 14.2.0-19 [607 kB] Fetched 607 kB in 0s (29.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnuwv933e/libstdc++6_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf perl-modules-5.40 all 5.40.1-2 [3017 kB] Fetched 3017 kB in 0s (72.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpydroi_l2/perl-modules-5.40_5.40.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libmagic1t64 armhf 1:5.46-4 [100 kB] Fetched 100 kB in 0s (5680 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-4_armhf.deb' to '/srv/rebuilderd/tmp/tmp2dpvm_qj/libmagic1t64_5.46-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf cpp-14 armhf 14.2.0-19 [1280 B] Fetched 1280 B in 0s (77.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoq4wapes/cpp-14_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libc6-dev armhf 2.41-6 [1327 kB] Fetched 1327 kB in 0s (48.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23kfq9ak/libc6-dev_2.41-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libmount1 armhf 2.41-3 [188 kB] Fetched 188 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp74nw42kc/libmount1_2.41-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libffi8 armhf 3.4.7-1 [20.3 kB] Fetched 20.3 kB in 0s (1204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmc5xcg2e/libffi8_3.4.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libssl3t64 armhf 3.4.1-1 [1886 kB] Fetched 1886 kB in 0s (87.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpauq2tmzf/libssl3t64_3.4.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (764 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmp0efet3vq/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libncursesw6 armhf 6.5+20250216-2 [110 kB] Fetched 110 kB in 0s (6018 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprv8ysg6t/libncursesw6_6.5+20250216-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libtinfo6 armhf 6.5+20250216-2 [333 kB] Fetched 333 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl21lmcw5/libtinfo6_6.5+20250216-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (36.0 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpb7j5d7e8/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libmpfr6 armhf 4.2.2-1 [605 kB] Fetched 605 kB in 0s (27.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ptdxh09/libmpfr6_4.2.2-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libcrypt1 armhf 1:4.4.38-1 [95.6 kB] Fetched 95.6 kB in 0s (5472 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpyeys6_lc/libcrypt1_4.4.38-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libmd0 armhf 1.1.0-2+b1 [31.9 kB] Fetched 31.9 kB in 0s (1600 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi1x3l3v2/libmd0_1.1.0-2+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf dpkg armhf 1.22.18 [1494 kB] Fetched 1494 kB in 0s (51.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3mobdlg/dpkg_1.22.18_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libsmartcols1 armhf 2.41-3 [126 kB] Fetched 126 kB in 0s (7339 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1xyce0va/libsmartcols1_2.41-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libexpat1 armhf 2.7.1-1 [85.6 kB] Fetched 85.6 kB in 0s (4985 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp34sn5scw/libexpat1_2.7.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf binutils-common armhf 2.44-3 [2509 kB] Fetched 2509 kB in 0s (68.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6yn7_3q9/binutils-common_2.44-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-19 [15.8 MB] Fetched 15.8 MB in 0s (147 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf7yqvpcf/gcc-14-arm-linux-gnueabihf_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1391 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn8ixtk1f/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf dwz armhf 0.15-1+b2 [106 kB] Fetched 106 kB in 0s (6016 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8es0lgg4/dwz_0.15-1+b2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf gettext-base armhf 0.23.1-1 [238 kB] Fetched 238 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6878589h/gettext-base_0.23.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libreadline8t64 armhf 8.2-6 [146 kB] Fetched 146 kB in 0s (8059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3oti7wok/libreadline8t64_8.2-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf diffutils armhf 1:3.10-3 [370 kB] Fetched 370 kB in 0s (14.1 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-3_armhf.deb' to '/srv/rebuilderd/tmp/tmpkg7ffmxc/diffutils_3.10-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf liblzma5 armhf 5.8.1-1 [296 kB] Fetched 296 kB in 0s (14.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkwmczgdu/liblzma5_5.8.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf base-files armhf 13.7 [72.9 kB] Fetched 72.9 kB in 0s (4349 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprimqzcr3/base-files_13.7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf grep armhf 3.11-4 [420 kB] Fetched 420 kB in 0s (20.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8vjjovri/grep_3.11-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (6860 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ysb6beu/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf debianutils armhf 5.21 [90.8 kB] Fetched 90.8 kB in 0s (4826 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpziqzs91t/debianutils_5.21_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf patch armhf 2.7.6-7 [125 kB] Fetched 125 kB in 0s (6530 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx1zbt12e/patch_2.7.6-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1 [1204 B] Fetched 1204 B in 0s (70.2 kB/s) dpkg-name: info: moved 'g++-arm-linux-gnueabihf_4%3a14.2.0-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpicmkib_n/g++-arm-linux-gnueabihf_14.2.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libdivsufsort-dev armhf 2.0.1-6+b1 [19.1 kB] Fetched 19.1 kB in 0s (1105 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplbpta12h/libdivsufsort-dev_2.0.1-6+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libselinux1 armhf 3.8.1-1 [74.8 kB] Fetched 74.8 kB in 0s (4121 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpezt3bqud/libselinux1_3.8.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpam-modules-bin armhf 1.7.0-3 [44.9 kB] Fetched 44.9 kB in 0s (2566 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppyn9yalq/libpam-modules-bin_1.7.0-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Fetched 65.6 kB in 0s (3727 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp08rp4r2_/libuchardet0_0.0.8-1+b2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libgdbm-compat4t64 armhf 1.24-2 [50.0 kB] Fetched 50.0 kB in 0s (2898 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmh6jsxda/libgdbm-compat4t64_1.24-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf util-linux armhf 2.41-3 [1131 kB] Fetched 1131 kB in 0s (43.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxubgx3zr/util-linux_2.41-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libatomic1 armhf 14.2.0-19 [7200 B] Fetched 7200 B in 0s (432 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4l6y3010/libatomic1_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (1152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1kmfxh4/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libctf-nobfd0 armhf 2.44-3 [128 kB] Fetched 128 kB in 0s (7331 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglihvppn/libctf-nobfd0_2.44-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [602 kB] Fetched 602 kB in 0s (28.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk5rgizkp/libdb5.3t64_5.3.28+dfsg2-9_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (3282 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd5_oqzzw/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1 [4844 B] Fetched 4844 B in 0s (463 kB/s) dpkg-name: info: moved 'cpp-arm-linux-gnueabihf_4%3a14.2.0-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpwbiv2c3a/cpp-arm-linux-gnueabihf_14.2.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf dash armhf 0.5.12-12 [90.4 kB] Fetched 90.4 kB in 0s (5278 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4r6h9sdb/dash_0.5.12-12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmjwx15_n/libpam-runtime_1.7.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf bash armhf 5.2.37-1.1+b2 [1433 kB] Fetched 1433 kB in 0s (74.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_arswh_q/bash_5.2.37-1.1+b2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf make armhf 4.4.1-2 [449 kB] Fetched 449 kB in 0s (13.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplwhrlooz/make_4.4.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf coreutils armhf 9.6-2 [2847 kB] Fetched 2847 kB in 0s (71.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpra4__ih7/coreutils_9.6-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libgmp10 armhf 2:6.3.0+dfsg-3 [512 kB] Fetched 512 kB in 0s (24.9 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_armhf.deb' to '/srv/rebuilderd/tmp/tmpgwo7hqwa/libgmp10_6.3.0+dfsg-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Fetched 35.0 kB in 0s (2104 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg_4id2a6/libpipeline1_1.5.8-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libaudit1 armhf 1:4.0.2-2+b2 [49.2 kB] Fetched 49.2 kB in 0s (4512 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b2_armhf.deb' to '/srv/rebuilderd/tmp/tmp65xspjbt/libaudit1_4.0.2-2+b2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (1481 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpll168dr7/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libblkid1 armhf 2.41-3 [155 kB] Fetched 155 kB in 0s (8679 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbkdj1kt/libblkid1_2.41-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libelf1t64 armhf 0.192-4 [184 kB] Fetched 184 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx4nuqin2/libelf1t64_0.192-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.4 [604 kB] Fetched 604 kB in 0s (28.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdbabx3wq/libxml2_2.12.7+dfsg+really2.9.14-0.4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf sed armhf 4.9-2 [321 kB] Fetched 321 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptch7p3p5/sed_4.9-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf build-essential armhf 12.12 [4624 B] Fetched 4624 B in 0s (227 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn62u1xfb/build-essential_12.12_armhf.deb' Downloading dependency 1 of 154: libctf0:armhf=2.44-3 Downloading dependency 2 of 154: libpython3-stdlib:armhf=3.13.2-2 Downloading dependency 3 of 154: mawk:armhf=1.3.4.20250131-1 Downloading dependency 4 of 154: gettext:armhf=0.23.1-1 Downloading dependency 5 of 154: libzstd1:armhf=1.5.7+dfsg-1 Downloading dependency 6 of 154: python3:armhf=3.13.2-2 Downloading dependency 7 of 154: autopoint:armhf=0.23.1-1 Downloading dependency 8 of 154: libmagic-mgc:armhf=1:5.46-4 Downloading dependency 9 of 154: libpam0g:armhf=1.7.0-3 Downloading dependency 10 of 154: libc-dev-bin:armhf=2.41-6 Downloading dependency 11 of 154: libcap2:armhf=1:2.75-4 Downloading dependency 12 of 154: gcc-arm-linux-gnueabihf:armhf=4:14.2.0-1 Downloading dependency 13 of 154: readline-common:armhf=8.2-6 Downloading dependency 14 of 154: libc-bin:armhf=2.41-6 Downloading dependency 15 of 154: libacl1:armhf=2.3.2-2+b1 Downloading dependency 16 of 154: bsdutils:armhf=1:2.41-3 Downloading dependency 17 of 154: g++-14:armhf=14.2.0-19 Downloading dependency 18 of 154: libpython3.13-minimal:armhf=3.13.2-3 Downloading dependency 19 of 154: perl:armhf=5.40.1-2 Downloading dependency 20 of 154: xz-utils:armhf=5.8.1-1 Downloading dependency 21 of 154: g++-14-arm-linux-gnueabihf:armhf=14.2.0-19 Downloading dependency 22 of 154: libisl23:armhf=0.27-1 Downloading dependency 23 of 154: libcrypt-dev:armhf=1:4.4.38-1 Downloading dependency 24 of 154: libgdbm6t64:armhf=1.24-2 Downloading dependency 25 of 154: rpcsvc-proto:armhf=1.4.3-1 Downloading dependency 26 of 154: libattr1:armhf=1:2.5.2-3 Downloading dependency 27 of 154: bzip2:armhf=1.0.8-6 Downloading dependency 28 of 154: libc6:armhf=2.41-6 Downloading dependency 29 of 154: libstdc++-14-dev:armhf=14.2.0-19 Downloading dependency 30 of 154: linux-libc-dev:armhf=6.12.21-1 Downloading dependency 31 of 154: media-types:armhf=13.0.0 Downloading dependency 32 of 154: cpp-14-arm-linux-gnueabihf:armhf=14.2.0-19 Downloading dependency 33 of 154: libgcc-14-dev:armhf=14.2.0-19 Downloading dependency 34 of 154: debhelper:armhf=13.24.2 Downloading dependency 35 of 154: perl-base:armhf=5.40.1-2 Downloading dependency 36 of 154: m4:armhf=1.4.19-7 Downloading dependency 37 of 154: gcc:armhf=4:14.2.0-1 Downloading dependency 38 of 154: gcc-14:armhf=14.2.0-19 Downloading dependency 39 of 154: autoconf:armhf=2.72-3 Downloading dependency 40 of 154: libgcc-s1:armhf=14.2.0-19 Downloading dependency 41 of 154: man-db:armhf=2.13.0-1 Downloading dependency 42 of 154: sysvinit-utils:armhf=3.14-4 Downloading dependency 43 of 154: init-system-helpers:armhf=1.68 Downloading dependency 44 of 154: libuuid1:armhf=2.41-3 Downloading dependency 45 of 154: libsqlite3-0:armhf=3.46.1-2 Downloading dependency 46 of 154: cpp:armhf=4:14.2.0-1 Downloading dependency 47 of 154: libasan8:armhf=14.2.0-19 Downloading dependency 48 of 154: gcc-14-base:armhf=14.2.0-19 Downloading dependency 49 of 154: findutils:armhf=4.10.0-3 Downloading dependency 50 of 154: file:armhf=1:5.46-4 Downloading dependency 51 of 154: libdebhelper-perl:armhf=13.24.2 Downloading dependency 52 of 154: libpcre2-8-0:armhf=10.45-1 Downloading dependency 53 of 154: tzdata:armhf=2025b-1 Downloading dependency 54 of 154: binutils:armhf=2.44-3 Downloading dependency 55 of 154: libarchive-zip-perl:armhf=1.68-1 Downloading dependency 56 of 154: libubsan1:armhf=14.2.0-19 Downloading dependency 57 of 154: libsystemd0:armhf=257.4-9 Downloading dependency 58 of 154: po-debconf:armhf=1.0.21+nmu1 Downloading dependency 59 of 154: libdebconfclient0:armhf=0.278 Downloading dependency 60 of 154: libbz2-1.0:armhf=1.0.8-6 Downloading dependency 61 of 154: base-passwd:armhf=3.6.7 Downloading dependency 62 of 154: liblastlog2-2:armhf=2.41-3 Downloading dependency 63 of 154: ncurses-bin:armhf=6.5+20250216-2 Downloading dependency 64 of 154: libmpc3:armhf=1.3.1-1+b3 Downloading dependency 65 of 154: libsframe1:armhf=2.44-3 Downloading dependency 66 of 154: python3-minimal:armhf=3.13.2-2 Downloading dependency 67 of 154: libunistring5:armhf=1.3-2 Downloading dependency 68 of 154: tar:armhf=1.35+dfsg-3.1 Downloading dependency 69 of 154: libdpkg-perl:armhf=1.22.18 Downloading dependency 70 of 154: libpython3.13-stdlib:armhf=3.13.2-3 Downloading dependency 71 of 154: hostname:armhf=3.25 Downloading dependency 72 of 154: ncurses-base:armhf=6.5+20250216-2 Downloading dependency 73 of 154: dpkg-dev:armhf=1.22.18 Downloading dependency 74 of 154: dh-strip-nondeterminism:armhf=1.14.1-2 Downloading dependency 75 of 154: libcap-ng0:armhf=0.8.5-4+b1 Downloading dependency 76 of 154: libstdc++6:armhf=14.2.0-19 Downloading dependency 77 of 154: perl-modules-5.40:armhf=5.40.1-2 Downloading dependency 78 of 154: libmagic1t64:armhf=1:5.46-4 Downloading dependency 79 of 154: cpp-14:armhf=14.2.0-19 Downloading dependency 80 of 154: libc6-dev:armhf=2.41-6 Downloading dependency 81 of 154: libmount1:armhf=2.41-3 Downloading dependency 82 of 154: libffi8:armhf=3.4.7-1 Downloading dependency 83 of 154: libssl3t64:armhf=3.4.1-1 Downloading dependency 84 of 154: libaudit-common:armhf=1:4.0.2-2 Downloading dependency 85 of 154: libncursesw6:armhf=6.5+20250216-2 Downloading dependency 86 of 154: libtinfo6:armhf=6.5+20250216-2 Downloading dependency 87 of 154: automake:armhf=1:1.17-4 Downloading dependency 88 of 154: libmpfr6:armhf=4.2.2-1 Downloading dependency 89 of 154: libcrypt1:armhf=1:4.4.38-1 Downloading dependency 90 of 154: libmd0:armhf=1.1.0-2+b1 Downloading dependency 91 of 154: dpkg:armhf=1.22.18 Downloading dependency 92 of 154: libsmartcols1:armhf=2.41-3 Downloading dependency 93 of 154: libexpat1:armhf=2.7.1-1 Downloading dependency 94 of 154: binutils-common:armhf=2.44-3 Downloading dependency 95 of 154: gcc-14-arm-linux-gnueabihf:armhf=14.2.0-19 Downloading dependency 96 of 154: intltool-debian:armhf=0.35.0+20060710.6 Downloading dependency 97 of 154: dwz:armhf=0.15-1+b2 Downloading dependency 98 of 154: gettext-base:armhf=0.23.1-1 Downloading dependency 99 of 154: libreadline8t64:armhf=8.2-6 Downloading dependency 100 of 154: diffutils:armhf=1:3.10-3 Downloading dependency 101 of 154: liblzma5:armhf=5.8.1-1 Downloading dependency 102 of 154: base-files:armhf=13.7 Downloading dependency 103 of 154: grep:armhf=3.11-4 Downloading dependency 104 of 154: debconf:armhf=1.5.91 Downloading dependency 105 of 154: debianutils:armhf=5.21 Downloading dependency 106 of 154: patch:armhf=2.7.6-7 Downloading dependency 107 of 154: g++-arm-linux-gnueabihf:armhf=4:14.2.0-1 Downloading dependency 108 of 154: libdivsufsort-dev:armhf=2.0.1-6+b1 Downloading dependency 109 of 154: libselinux1:armhf=3.8.1-1 Downloading dependency 110 of 154: libpam-modules-bin:armhf=1.7.0-3 Downloading dependency 111 of 154: libuchardet0:armhf=0.0.8-1+b2 Downloading dependency 112 of 154: libgdbm-compat4t64:armhf=1.24-2 Downloading dependency 113 of 154: util-linux:armhf=2.41-3 Downloading dependency 114 of 154: libatomic1:armhf=14.2.0-19 Downloading dependency 115 of 154: libfile-stripnondeterminism-perl:armhf=1.14.1-2 Downloading dependency 116 of 154: libctf-nobfd0:armhf=2.44-3 Downloading dependency 117 of 154: libdb5.3t64:armhf=5.3.28+dfsg2-9 Downloading dependency 118 of 154: autotools-dev:armhf=20240727.1 Downloading dependency 119 of 154: cpp-arm-linux-gnueabihf:armhf=4:14.2.0-1 Downloading dependency 120 of 154: dash:armhf=0.5.12-12 Downloading dependency 121 of 154: libpam-runtime:armhf=1.7.0-3 Downloading dependency 122 of 154: bash:armhf=5.2.37-1.1+b2 Downloading dependency 123 of 154: make:armhf=4.4.1-2 Downloading dependency 124 of 154: coreutils:armhf=9.6-2 Downloading dependency 125 of 154: libgmp10:armhf=2:6.3.0+dfsg-3 Downloading dependency 126 of 154: libpipeline1:armhf=1.5.8-1 Downloading dependency 127 of 154: libaudit1:armhf=1:4.0.2-2+b2 Downloading dependency 128 of 154: sensible-utils:armhf=0.0.24 Downloading dependency 129 of 154: libblkid1:armhf=2.41-3 Downloading dependency 130 of 154: libelf1t64:armhf=0.192-4 Downloading dependency 131 of 154: libxml2:armhf=2.12.7+dfsg+really2.9.14-0.4 Downloading dependency 132 of 154: sed:armhf=4.9-2 Downloading dependency 133 of 154: build-essential:armhf=12.12 Downloading dependency 134 of 154: libudev1:armhf=257.4-9Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libudev1 armhf 257.4-9 [141 kB] Fetched 141 kB in 0s (7864 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vj9al6_/libudev1_257.4-9_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf bsdextrautils armhf 2.41-3 [86.3 kB] Fetched 86.3 kB in 0s (5172 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp792lli21/bsdextrautils_2.41-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libperl5.40 armhf 5.40.1-2 [3613 kB] Fetched 3613 kB in 0s (76.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpherp2r6h/libperl5.40_5.40.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf python3.13 armhf 3.13.2-3 [746 kB] Fetched 746 kB in 0s (32.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62866n9t/python3.13_3.13.2-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (25.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl9gz8dp4/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libgomp1 armhf 14.2.0-19 [111 kB] Fetched 111 kB in 0s (6340 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp76z0o9ki/libgomp1_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libcc1-0 armhf 14.2.0-19 [36.5 kB] Fetched 36.5 kB in 0s (2214 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7g343x0r/libcc1-0_14.2.0-19_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libdivsufsort3 armhf 2.0.1-6+b1 [45.0 kB] Fetched 45.0 kB in 0s (2682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf5rz5wwb/libdivsufsort3_2.0.1-6+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (714 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsnmk3liw/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf groff-base armhf 1.23.0-7 [1095 kB] Fetched 1095 kB in 0s (40.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprdku8xxv/groff-base_1.23.0-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf g++ armhf 4:14.2.0-1 [1324 B] Fetched 1324 B in 0s (81.5 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpuagh38xf/g++_14.2.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (968 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt_7y8s75/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf zlib1g armhf 1:1.3.dfsg+really1.3.1-1+b1 [75.2 kB] Fetched 75.2 kB in 0s (4412 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb' to '/srv/rebuilderd/tmp/tmp2g7ape8j/zlib1g_1.3.dfsg+really1.3.1-1+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf gzip armhf 1.13-1 [134 kB] Fetched 134 kB in 0s (7268 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgrcph9s4/gzip_1.13-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libbinutils armhf 2.44-3 [339 kB] Fetched 339 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw3dx6m67/libbinutils_2.44-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libjansson4 armhf 2.14-2+b3 [35.5 kB] Fetched 35.5 kB in 0s (2186 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2y0ly428/libjansson4_2.14-2+b3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libseccomp2 armhf 2.6.0-2 [49.3 kB] Fetched 49.3 kB in 0s (2940 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5prxusnm/libseccomp2_2.6.0-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf openssl-provider-legacy armhf 3.4.1-1 [293 kB] Fetched 293 kB in 0s (15.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_y4_txx/openssl-provider-legacy_3.4.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf libpam-modules armhf 1.7.0-3 [162 kB] Fetched 162 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptbs170gn/libpam-modules_1.7.0-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf python3.13-minimal armhf 3.13.2-3 [1845 kB] Fetched 1845 kB in 0s (57.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1h1e8fbl/python3.13-minimal_3.13.2-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250406T210903Z sid/main armhf binutils-arm-linux-gnueabihf armhf 2.44-3 [833 kB] Fetched 833 kB in 0s (56.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpse17lqis/binutils-arm-linux-gnueabihf_2.44-3_armhf.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture arm64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpjpboh9tz/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: armhf is different from arm64 but can be executed natively I: using /srv/rebuilderd/tmp/mmdebstrap.Rnayib3KRX as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.Rnayib3KRX 127.0.0.1 - - [26/Jul/2025 02:49:05] code 404, message File not found 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33747 ./ InRelease 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:33747 ./ Release [462 B] 127.0.0.1 - - [26/Jul/2025 02:49:05] code 404, message File not found 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33747 ./ Release.gpg 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:33747 ./ Packages [188 kB] Fetched 189 kB in 0s (7270 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./gcc-14-base_14.2.0-19_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libc6_2.41-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libgcc-s1_14.2.0-19_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./mawk_1.3.4.20250131-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./base-files_13.7_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libtinfo6_6.5%2b20250216-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./debianutils_5.21_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./bash_5.2.37-1.1%2bb2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libcap2_2.75-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libsystemd0_257.4-9_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./bsdutils_2.41-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libacl1_2.3.2-2%2bb1_armhf.deb HTTP/1.1" 200 - 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127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libsqlite3-0_3.46.1-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./liblastlog2-2_2.41-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libmount1_2.41-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libsmartcols1_2.41-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libudev1_257.4-9_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libuuid1_2.41-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./util-linux_2.41-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libdebconfclient0_0.278_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./base-passwd_3.6.7_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:05] "GET /./libc-bin_2.41-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - 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I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.Rnayib3KRX 127.0.0.1 - - [26/Jul/2025 02:49:08] code 404, message File not found 127.0.0.1 - - [26/Jul/2025 02:49:08] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33747 ./ InRelease 127.0.0.1 - - [26/Jul/2025 02:49:08] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:33747 ./ Release 127.0.0.1 - - [26/Jul/2025 02:49:08] code 404, message File not found 127.0.0.1 - - [26/Jul/2025 02:49:08] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33747 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libdpkg-perl_1.22.18_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./patch_2.7.6-7_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./dpkg-dev_1.22.18_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./build-essential_12.12_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libdebhelper-perl_13.24.2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libtool_2.5.4-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./dh-autoreconf_20_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libfile-stripnondeterminism-perl_1.14.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./dh-strip-nondeterminism_1.14.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libelf1t64_0.192-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./dwz_0.15-1%2bb2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libunistring5_1.3-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libxml2_2.12.7%2bdfsg%2breally2.9.14-0.4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./gettext_0.23.1-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./debhelper_13.24.2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libdivsufsort3_2.0.1-6%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./libdivsufsort-dev_2.0.1-6%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [26/Jul/2025 02:49:17] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpjpboh9tz/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.Rnayib3KRX Reading package lists... Building dependency tree... Reading state information... libctf0 is already the newest version (2.44-3). libctf0 set to manually installed. libpython3-stdlib is already the newest version (3.13.2-2). libpython3-stdlib set to manually installed. mawk is already the newest version (1.3.4.20250131-1). gettext is already the newest version (0.23.1-1). gettext set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-1). python3 is already the newest version (3.13.2-2). python3 set to manually installed. autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. libmagic-mgc is already the newest version (1:5.46-4). libmagic-mgc set to manually installed. libpam0g is already the newest version (1.7.0-3). libc-dev-bin is already the newest version (2.41-6). libc-dev-bin set to manually installed. libcap2 is already the newest version (1:2.75-4). gcc-arm-linux-gnueabihf is already the newest version (4:14.2.0-1). gcc-arm-linux-gnueabihf set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. libc-bin is already the newest version (2.41-6). libacl1 is already the newest version (2.3.2-2+b1). bsdutils is already the newest version (1:2.41-3). g++-14 is already the newest version (14.2.0-19). g++-14 set to manually installed. libpython3.13-minimal is already the newest version (3.13.2-3). libpython3.13-minimal set to manually installed. perl is already the newest version (5.40.1-2). perl set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. g++-14-arm-linux-gnueabihf is already the newest version (14.2.0-19). g++-14-arm-linux-gnueabihf set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libattr1 is already the newest version (1:2.5.2-3). bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libc6 is already the newest version (2.41-6). libstdc++-14-dev is already the newest version (14.2.0-19). libstdc++-14-dev set to manually installed. linux-libc-dev is already the newest version (6.12.21-1). linux-libc-dev set to manually installed. media-types is already the newest version (13.0.0). media-types set to manually installed. cpp-14-arm-linux-gnueabihf is already the newest version (14.2.0-19). cpp-14-arm-linux-gnueabihf set to manually installed. libgcc-14-dev is already the newest version (14.2.0-19). libgcc-14-dev set to manually installed. debhelper is already the newest version (13.24.2). debhelper set to manually installed. perl-base is already the newest version (5.40.1-2). m4 is already the newest version (1.4.19-7). m4 set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. gcc-14 is already the newest version (14.2.0-19). gcc-14 set to manually installed. autoconf is already the newest version (2.72-3). autoconf set to manually installed. libgcc-s1 is already the newest version (14.2.0-19). man-db is already the newest version (2.13.0-1). man-db set to manually installed. sysvinit-utils is already the newest version (3.14-4). init-system-helpers is already the newest version (1.68). libuuid1 is already the newest version (2.41-3). libsqlite3-0 is already the newest version (3.46.1-2). cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libasan8 is already the newest version (14.2.0-19). libasan8 set to manually installed. gcc-14-base is already the newest version (14.2.0-19). findutils is already the newest version (4.10.0-3). file is already the newest version (1:5.46-4). file set to manually installed. libdebhelper-perl is already the newest version (13.24.2). libdebhelper-perl set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). tzdata is already the newest version (2025b-1). tzdata set to manually installed. binutils is already the newest version (2.44-3). binutils set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libubsan1 is already the newest version (14.2.0-19). libubsan1 set to manually installed. libsystemd0 is already the newest version (257.4-9). po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libdebconfclient0 is already the newest version (0.278). libbz2-1.0 is already the newest version (1.0.8-6). base-passwd is already the newest version (3.6.7). liblastlog2-2 is already the newest version (2.41-3). ncurses-bin is already the newest version (6.5+20250216-2). libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. libsframe1 is already the newest version (2.44-3). libsframe1 set to manually installed. python3-minimal is already the newest version (3.13.2-2). python3-minimal set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. tar is already the newest version (1.35+dfsg-3.1). libdpkg-perl is already the newest version (1.22.18). libdpkg-perl set to manually installed. libpython3.13-stdlib is already the newest version (3.13.2-3). libpython3.13-stdlib set to manually installed. hostname is already the newest version (3.25). ncurses-base is already the newest version (6.5+20250216-2). dpkg-dev is already the newest version (1.22.18). dpkg-dev set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). libstdc++6 is already the newest version (14.2.0-19). libstdc++6 set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-2). perl-modules-5.40 set to manually installed. libmagic1t64 is already the newest version (1:5.46-4). libmagic1t64 set to manually installed. cpp-14 is already the newest version (14.2.0-19). cpp-14 set to manually installed. libc6-dev is already the newest version (2.41-6). libc6-dev set to manually installed. libmount1 is already the newest version (2.41-3). libffi8 is already the newest version (3.4.7-1). libffi8 set to manually installed. libssl3t64 is already the newest version (3.4.1-1). libaudit-common is already the newest version (1:4.0.2-2). libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). automake is already the newest version (1:1.17-4). automake set to manually installed. libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libmd0 is already the newest version (1.1.0-2+b1). dpkg is already the newest version (1.22.18). libsmartcols1 is already the newest version (2.41-3). libexpat1 is already the newest version (2.7.1-1). libexpat1 set to manually installed. binutils-common is already the newest version (2.44-3). binutils-common set to manually installed. gcc-14-arm-linux-gnueabihf is already the newest version (14.2.0-19). gcc-14-arm-linux-gnueabihf set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. dwz is already the newest version (0.15-1+b2). dwz set to manually installed. gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. diffutils is already the newest version (1:3.10-3). liblzma5 is already the newest version (5.8.1-1). base-files is already the newest version (13.7). grep is already the newest version (3.11-4). debconf is already the newest version (1.5.91). debianutils is already the newest version (5.21). patch is already the newest version (2.7.6-7). patch set to manually installed. g++-arm-linux-gnueabihf is already the newest version (4:14.2.0-1). g++-arm-linux-gnueabihf set to manually installed. libdivsufsort-dev is already the newest version (2.0.1-6+b1). libdivsufsort-dev set to manually installed. libselinux1 is already the newest version (3.8.1-1). libpam-modules-bin is already the newest version (1.7.0-3). libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. util-linux is already the newest version (2.41-3). libatomic1 is already the newest version (14.2.0-19). libatomic1 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. libctf-nobfd0 is already the newest version (2.44-3). libctf-nobfd0 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. cpp-arm-linux-gnueabihf is already the newest version (4:14.2.0-1). cpp-arm-linux-gnueabihf set to manually installed. dash is already the newest version (0.5.12-12). libpam-runtime is already the newest version (1.7.0-3). bash is already the newest version (5.2.37-1.1+b2). make is already the newest version (4.4.1-2). make set to manually installed. coreutils is already the newest version (9.6-2). libgmp10 is already the newest version (2:6.3.0+dfsg-3). libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b2). sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. libblkid1 is already the newest version (2.41-3). libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.4). libxml2 set to manually installed. sed is already the newest version (4.9-2). build-essential is already the newest version (12.12). build-essential set to manually installed. libudev1 is already the newest version (257.4-9). bsdextrautils is already the newest version (2.41-3). bsdextrautils set to manually installed. libperl5.40 is already the newest version (5.40.1-2). libperl5.40 set to manually installed. python3.13 is already the newest version (3.13.2-3). python3.13 set to manually installed. libtool is already the newest version (2.5.4-4). libtool set to manually installed. libgomp1 is already the newest version (14.2.0-19). libgomp1 set to manually installed. libcc1-0 is already the newest version (14.2.0-19). libcc1-0 set to manually installed. libdivsufsort3 is already the newest version (2.0.1-6+b1). libdivsufsort3 set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. groff-base is already the newest version (1.23.0-7). groff-base set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). gzip is already the newest version (1.13-1). libbinutils is already the newest version (2.44-3). libbinutils set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. openssl-provider-legacy is already the newest version (3.4.1-1). libpam-modules is already the newest version (1.7.0-3). python3.13-minimal is already the newest version (3.13.2-3). python3.13-minimal set to manually installed. binutils-arm-linux-gnueabihf is already the newest version (2.44-3). binutils-arm-linux-gnueabihf set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.Rnayib3KRX (Reading database ... 14539 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Rnayib3KRX I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Rnayib3KRX I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.Rnayib3KRX... I: success in 31.0099 seconds Downloading dependency 135 of 154: bsdextrautils:armhf=2.41-3 Downloading dependency 136 of 154: libperl5.40:armhf=5.40.1-2 Downloading dependency 137 of 154: python3.13:armhf=3.13.2-3 Downloading dependency 138 of 154: libtool:armhf=2.5.4-4 Downloading dependency 139 of 154: libgomp1:armhf=14.2.0-19 Downloading dependency 140 of 154: libcc1-0:armhf=14.2.0-19 Downloading dependency 141 of 154: libdivsufsort3:armhf=2.0.1-6+b1 Downloading dependency 142 of 154: netbase:armhf=6.5 Downloading dependency 143 of 154: groff-base:armhf=1.23.0-7 Downloading dependency 144 of 154: g++:armhf=4:14.2.0-1 Downloading dependency 145 of 154: dh-autoreconf:armhf=20 Downloading dependency 146 of 154: zlib1g:armhf=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 147 of 154: gzip:armhf=1.13-1 Downloading dependency 148 of 154: libbinutils:armhf=2.44-3 Downloading dependency 149 of 154: libjansson4:armhf=2.14-2+b3 Downloading dependency 150 of 154: libseccomp2:armhf=2.6.0-2 Downloading dependency 151 of 154: openssl-provider-legacy:armhf=3.4.1-1 Downloading dependency 152 of 154: libpam-modules:armhf=1.7.0-3 Downloading dependency 153 of 154: python3.13-minimal:armhf=3.13.2-3 Downloading dependency 154 of 154: binutils-arm-linux-gnueabihf:armhf=2.44-3 env --chdir=/srv/rebuilderd/tmp/rebuilderdSJpq6d/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1744076913 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuild5bnJc7/debrebuild.sbuildrc.JaI_v7PK4scl sbuild --build=armhf --host=armhf --no-source --arch-any --no-arch-all --binNMU-changelog= hmmer (3.4+dfsg-2+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for armhf; no source changes. * Rebuild with sbuild 0.88.1 to address #1089088 -- arm Build Daemon (arm-conova-01) Tue, 08 Apr 2025 01:48:33 +0000 --chroot=/srv/rebuilderd/tmp/debrebuild5bnJc7/debrebuild.tar.3q91_5SGXhmG --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=hmmer-3.4+dfsg /srv/rebuilderd/tmp/rebuilderdSJpq6d/inputs/hmmer_3.4+dfsg-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3 (07 June 2025) on codethink01-arm64 +==============================================================================+ | hmmer 3.4+dfsg-2+b2 (armhf) Sat, 26 Jul 2025 01:49:36 +0000 | +==============================================================================+ Package: hmmer Version: 3.4+dfsg-2+b2 Source Version: 3.4+dfsg-2 Distribution: unstable Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuild5bnJc7/debrebuild.tar.3q91_5SGXhmG to /srv/rebuilderd/tmp/tmp.sbuild.8X4TNfnr8C... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sat, 26 Jul 2025 01:49:43 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdSJpq6d/inputs/hmmer_3.4+dfsg-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdSJpq6d/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 26 Jul 2025 01:49:45 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential Filtered Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-qbHqN9/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sat, 26 Jul 2025 01:49:51 +0000 | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment Sat, 26 Jul 2025 01:49:52 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.35+deb13-cloud-arm64 #1 SMP Debian 6.12.35-1 (2025-07-03) arm64 (aarch64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.21-1 Package versions: autoconf_2.72-3 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-1.1+b2 binutils_2.44-3 binutils-arm-linux-gnueabihf_2.44-3 binutils-common_2.44-3 bsdextrautils_2.41-3 bsdutils_1:2.41-3 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.6-2 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-arm-linux-gnueabihf_14.2.0-19 cpp-arm-linux-gnueabihf_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-3 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b2 file_1:5.46-4 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-arm-linux-gnueabihf_14.2.0-19 g++-arm-linux-gnueabihf_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-arm-linux-gnueabihf_14.2.0-19 gcc-14-base_14.2.0-19 gcc-arm-linux-gnueabihf_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-3 libbz2-1.0_1.0.8-6 libc-bin_2.41-6 libc-dev-bin_2.41-6 libc6_2.41-6 libc6-dev_2.41-6 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-4 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdivsufsort-dev_2.0.1-6+b1 libdivsufsort3_2.0.1-6+b1 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libexpat1_2.7.1-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgomp1_14.2.0-19 libisl23_0.27-1 libjansson4_2.14-2+b3 liblastlog2-2_2.41-3 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-4 libmagic1t64_1:5.46-4 libmd0_1.1.0-2+b1 libmount1_2.41-3 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpython3-stdlib_3.13.2-2 libpython3.13-minimal_3.13.2-3 libpython3.13-stdlib_3.13.2-3 libreadline8t64_8.2-6 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-3 libsqlite3-0_3.46.1-2 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.4-9 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.4-9 libunistring5_1.3-2 libuuid1_2.41-3 libxml2_2.12.7+dfsg+really2.9.14-0.4 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.21-1 m4_1.4.19-7 make_4.4.1-2 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_13.0.0 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl-provider-legacy_3.4.1-1 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 po-debconf_1.0.21+nmu1 python3_3.13.2-2 python3-minimal_3.13.2-2 python3.13_3.13.2-3 python3.13-minimal_3.13.2-3 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-1 util-linux_2.41-3 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Sat, 26 Jul 2025 01:49:52 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hmmer Binary: hmmer, hmmer-doc, hmmer-examples Architecture: any all Version: 3.4+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://hmmer.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/hmmer Vcs-Git: https://salsa.debian.org/med-team/hmmer.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3 Package-List: hmmer deb science optional arch=any-amd64,any-i386,arm64,powerpc,ppc64,x32 hmmer-doc deb doc optional arch=all hmmer-examples deb doc optional arch=any Checksums-Sha1: 69590adb499ca8e4eea9d2ed10fb66ae42e82ea8 13297988 hmmer_3.4+dfsg.orig.tar.xz 0fdc1387c061446ae90aa1bad78311b91d9613be 12792 hmmer_3.4+dfsg-2.debian.tar.xz Checksums-Sha256: 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 13297988 hmmer_3.4+dfsg.orig.tar.xz 5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 12792 hmmer_3.4+dfsg-2.debian.tar.xz Files: ac66418b48c613d96d43770f971a22d3 13297988 hmmer_3.4+dfsg.orig.tar.xz 052bc782e23681c65ad490638bc541c4 12792 hmmer_3.4+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmUEEYcACgkQPCZ2P2xn 5uJeeA//QPIKXLp1rvwSccWCMJj318Vrd0delJgACzsfhnxnNyUsZ5aBUWwefLvY 1EfijVSrLpR55GC+4QsLVxwgDEEPbR2pHh0ZoVFhPDisRf7SQe2wCQBDrdmLYdPR KKcQC19wj+yb+fEcemulJ9EXiFMknEpdZeYS9ijtedU7hWJCNtU/2Bf5oSAhEuJC 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use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying verbose-easel dpkg-source: info: applying skip_threads_check dpkg-source: info: applying sub_make_parallel dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 3.4+dfsg-2+b2 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1744076913 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.4+dfsg-2+b2 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by arm Build Daemon (arm-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? rm -f config.log config.status configure find . -name Makefile -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' AUTOHEADER=true dh_autoreconf make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' CPPFLAGS="-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" dh_auto_configure -- --enable-threads ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads configure: Configuring HMMER3 for your system. checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for egrep -e... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our NEON code... yes, armv7 flavor, with -mfpu=neon checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... no checking whether gcc can compile our NEON code... yes, armv7 flavor, with -mfpu=neon configure: Activating ARM Neon vector DP implementation checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for netinet/in.h... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for arm_neon.h... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking whether C compiler accepts -mlittle-endian... yes checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for declarations of fseeko and ftello... yes checking for gcc option to enable large file support... none needed configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_neon/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_neon to src/impl HMMER configuration: compiler: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -mfpu=neon -mlittle-endian -pthread host: arm-unknown-linux-gnueabihf linker: -Wl,-z,relro -Wl,-z,now -flto libraries: -lpthread DP implementation: neon Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' export V=VERBOSE ; dh_auto_build make -j8 make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c easel.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_alloc.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_alphabet.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_arr2.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_arr3.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_bitfield.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_buffer.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_cluster.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_composition.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_cpu.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_dirichlet.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_distance.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_dmatrix.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_dsqdata.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_exponential.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_fileparser.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_gamma.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_gencode.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_getopts.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_gev.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_graph.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_gumbel.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_heap.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_histogram.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_hmm.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_huffman.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_hyperexp.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_iset.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_json.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_keyhash.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_lognormal.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_matrixops.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_mem.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_minimizer.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_mixdchlet.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_mixgev.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_mpi.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msa.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msacluster.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile2.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_a2m.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_afa.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_clustal.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_phylip.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_psiblast.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_selex.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_stockholm.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msashuffle.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msaweight.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_normal.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_paml.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_quicksort.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_random.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_rand64.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_randomseq.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_ratematrix.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_recorder.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_red_black.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_regexp.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_rootfinder.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_scorematrix.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sq.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sqio.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sqio_ascii.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sqio_ncbi.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_ssi.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_stack.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_stats.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_stopwatch.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_stretchexp.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_subcmd.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_threads.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_tree.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_varint.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_vectorops.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_weibull.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_workqueue.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_wuss.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sse.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_avx.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_avx512.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -c esl_neon.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_iset.o esl_json.o esl_keyhash.o esl_lognormal.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lpthread -lm gcc -I. -I.. -I. -I./.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_filter.c gcc -I. -I.. -I. -I./.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lpthread -lm make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domain.o -c p7_domain.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hit.o -c p7_hit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_ssv.o -c fm_ssv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_neon libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o io.o -c io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C profmark all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' gcc -I../easel -I../easel -I../src -I../src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -I../easel -I../easel -I../src -I../src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' export V=VERBOSE ; make check -j12 | tee debian/test_log make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alloc_utest -I. -I. -L. -DeslALLOC_TESTDRIVE ./esl_alloc.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_bitfield_utest -I. -I. -L. -DeslBITFIELD_TESTDRIVE ./esl_bitfield.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cpu_utest -I. -I. -L. -DeslCPU_TESTDRIVE ./esl_cpu.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_graph_utest -I. -I. -L. -DeslGRAPH_TESTDRIVE ./esl_graph.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_huffman_utest -I. -I. -L. -DeslHUFFMAN_TESTDRIVE ./esl_huffman.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_iset_utest -I. -I. -L. -DeslISET_TESTDRIVE ./esl_iset.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_json_utest -I. -I. -L. -DeslJSON_TESTDRIVE ./esl_json.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_lognormal_utest -I. -I. -L. -DeslLOGNORMAL_TESTDRIVE ./esl_lognormal.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_matrixops_utest -I. -I. -L. -DeslMATRIXOPS_TESTDRIVE ./esl_matrixops.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_minimizer_utest -I. -I. -L. -DeslMINIMIZER_TESTDRIVE ./esl_minimizer.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mixdchlet_utest -I. -I. -L. -DeslMIXDCHLET_TESTDRIVE ./esl_mixdchlet.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_quicksort_utest -I. -I. -L. -DeslQUICKSORT_TESTDRIVE ./esl_quicksort.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rand64_utest -I. -I. -L. -DeslRAND64_TESTDRIVE ./esl_rand64.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_red_black_utest -I. -I. -L. -DeslRED_BLACK_TESTDRIVE ./esl_red_black.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_varint_utest -I. -I. -L. -DeslVARINT_TESTDRIVE ./esl_varint.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx_utest -I. -I. -L. -DeslAVX_TESTDRIVE ./esl_avx.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_neon_utest -I. -I. -L. -DeslNEON_TESTDRIVE ./esl_neon.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx512_utest -I. -I. -L. -DeslAVX512_TESTDRIVE ./esl_avx512.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vmx_utest -I. -I. -L. -DeslVMX_TESTDRIVE ./esl_vmx.c -leasel -lm -lpthread make -C miniapps tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C impl_neon libhmmer-impl.stamp gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7DOMAIN_TESTDRIVE -o p7_domain_utest ./p7_domain.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HIT_TESTDRIVE -o p7_hit_utest ./p7_hit.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATS_TESTDRIVE -o p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATUS_TESTDRIVE -o hmmd_search_status_utest ./hmmd_search_status.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lpthread -lm make -C impl_neon tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C easel check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C miniapps check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make -C testsuite check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ iset-utest] ... ok. exercise 26 [ json-utest] ... ok. exercise 27 [ keyhash-utest] ... ok. exercise 28 [ lognormal-utest] ... ok. exercise 29 [ matrixops-utest] ... ok. exercise 30 [ mem-utest] ... ok. exercise 31 [ minimizer-utest] ... ok. exercise 32 [ mixdchlet-utest] ... ok. exercise 33 [ msa-utest] ... ok. exercise 34 [ msacluster-utest] ... ok. exercise 35 [ msafile] ... ok. exercise 36 [ msafile2] ... ok. exercise 37 [ msafile-a2m] ... ok. exercise 38 [ msafile-afa] ... ok. exercise 39 [ msafile-clustal] ... ok. exercise 40 [ msafile-phylip] ... ok. exercise 41 [ msafile-psiblast] ... ok. exercise 42 [ msafile-selex] ... ok. exercise 43 [ msafile-stockholm] ... ok. exercise 44 [ msaweight-utest] ... ok. exercise 45 [ neon-utest] ... ok. exercise 46 [ normal-utest] ... ok. exercise 47 [ quicksort-utest] ... ok. exercise 48 [ random-utest] ... ok. exercise 49 [ rand64-utest] ... ok. exercise 50 [ randomseq-utest] ... ok. exercise 51 [ ratematrix-utest] ... ok. exercise 52 [ recorder-utest] ... ok. exercise 53 [ red_black-utest] ... ok. exercise 54 [ regexp-utest] ... ok. exercise 55 [ rootfinder-utest] ... ok. exercise 56 [ scorematrix-utest] ... ok. exercise 57 [ sq-utest] ... ok. exercise 58 [ sqio-utest] ... ok. exercise 59 [ sse-utest] ... ok. exercise 60 [ ssi-utest] ... ok. exercise 61 [ stack-utest] ... ok. exercise 62 [ stats-utest] ... ok. exercise 63 [ stretchexp-utest] ... ok. exercise 64 [ tree-utest] ... ok. exercise 65 [ varint-utest] ... ok. exercise 66 [ vectorops-utest] ... ok. exercise 67 [ vmx-utest] ... ok. exercise 68 [ weibull-utest] ... ok. exercise 69 [ wuss-utest] ... ok. exercise 70 [ e2] ... ok. exercise 71 [ degen-residues] ... ok. exercise 72 [ ncbi-indices] ... ok. exercise 73 [ blank-gf] ... ok. exercise 74 [ sindi] ... ok. exercise 75 [ esl-translate] ... ok. exercise 76 [ esl-afetch] ... ok. exercise 77 [ esl-alimanip] ... ok. exercise 78 [ esl-alimap] ... ok. exercise 79 [ esl-alimask] ... ok. exercise 80 [ esl-alimerge] ... ok. exercise 81 [ esl-alistat] ... ok. exercise 82 [ esl-compalign] ... ok. exercise 83 [ esl-construct] ... ok. exercise 84 [ esl-mask] ... ok. exercise 85 [ esl-seqrange] ... ok. exercise 86 [ esl-shuffle] ... ok. exercise 87 [ esl-ssdraw] ... ok. All 87 exercises at level <= 2 passed. System information: Sat Jul 26 01:52:45 UTC 2025 Linux sbuild 6.12.35+deb13-cloud-arm64 #1 SMP Debian 6.12.35-1 (2025-07-03) armv8l GNU/Linux make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C testsuite check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Sat Jul 26 01:53:07 UTC 2025 Linux sbuild 6.12.35+deb13-cloud-arm64 #1 SMP Debian 6.12.35-1 (2025-07-03) armv8l GNU/Linux make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/testsuite' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_install make -j8 install DESTDIR=/build/reproducible-path/hmmer-3.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' SUBDIR easel SUBDIR miniapps SUBDIR src SUBDIR impl_neon SUBDIR profmark if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin; fi if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1 ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1; fi make -C src install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin/ ;\ done make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C documentation install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make -C man install make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/arm-linux-gnueabihf/hmmer/ cp src/hmmc2 /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/arm-linux-gnueabihf/hmmer/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_installexamples mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \; find src/impl_sse -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \; cp src/itest_brute /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp src/hmmpress.itest.pl /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp -aR testsuite /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find easel -name "*.o" -delete cp -aR easel /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples cp -aR tutorial /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/build/reproducible-path/hmmer-3.4+dfsg^.^g" find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_compress -Xtutorial/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_fixperms find debian -name .dropbox.attr -delete find debian -name "*.fa" -executable -exec chmod -x \{\} \; find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.4+dfsg-2+b2_armhf.deb'. dpkg-genbuildinfo --build=any -O../hmmer_3.4+dfsg-2+b2_armhf.buildinfo dpkg-genchanges --build=any -O../hmmer_3.4+dfsg-2+b2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-07-26T01:53:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 26 Jul 2025 01:53:49 +0000 | +------------------------------------------------------------------------------+ hmmer_3.4+dfsg-2+b2_armhf.changes: ---------------------------------- Format: 1.8 Date: Tue, 08 Apr 2025 01:48:33 +0000 Source: hmmer (3.4+dfsg-2) Binary: hmmer-examples Binary-Only: yes Architecture: armhf Version: 3.4+dfsg-2+b2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: arm Build Daemon (arm-conova-01) Description: hmmer-examples - profile hidden Markov models for protein sequence analysis (examp Changes: hmmer (3.4+dfsg-2+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for armhf; no source changes. * Rebuild with sbuild 0.88.1 to address #1089088 Checksums-Sha1: ae4b417ae63b1e852b56596060212a0f63690daa 31325840 hmmer-examples_3.4+dfsg-2+b2_armhf.deb 814dc51927891513b82c15b8d90a3380faff64ce 5241 hmmer_3.4+dfsg-2+b2_armhf.buildinfo Checksums-Sha256: 3ae33409526faa8db01fc269e8d6fce45894805c33b1d458983e6cd893f92a8f 31325840 hmmer-examples_3.4+dfsg-2+b2_armhf.deb 4f9c80a5dcb458bed86290491afa01e0b355135655a9e9d2ca4513724210c37d 5241 hmmer_3.4+dfsg-2+b2_armhf.buildinfo Files: 9ce1b7c7d289d6de8a7d4ad0dc95f82a 31325840 doc optional hmmer-examples_3.4+dfsg-2+b2_armhf.deb 2fa1f5edb0915dc3bce340c2501e790d 5241 science optional hmmer_3.4+dfsg-2+b2_armhf.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Sat, 26 Jul 2025 01:53:50 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer (3.4+dfsg-2) Binary: hmmer-examples Architecture: armhf Version: 3.4+dfsg-2+b2 Binary-Only-Changes: hmmer (3.4+dfsg-2+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for armhf; no source changes. * Rebuild with sbuild 0.88.1 to address #1089088 . -- arm Build Daemon (arm-conova-01) Tue, 08 Apr 2025 01:48:33 +0000 Checksums-Md5: 9ce1b7c7d289d6de8a7d4ad0dc95f82a 31325840 hmmer-examples_3.4+dfsg-2+b2_armhf.deb Checksums-Sha1: ae4b417ae63b1e852b56596060212a0f63690daa 31325840 hmmer-examples_3.4+dfsg-2+b2_armhf.deb Checksums-Sha256: 3ae33409526faa8db01fc269e8d6fce45894805c33b1d458983e6cd893f92a8f 31325840 hmmer-examples_3.4+dfsg-2+b2_armhf.deb Build-Origin: Debian Build-Architecture: armhf Build-Date: Sat, 26 Jul 2025 01:53:47 +0000 Build-Path: /build/reproducible-path/hmmer-3.4+dfsg Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-4), autopoint (= 0.23.1-1), autotools-dev (= 20240727.1), base-files (= 13.7), base-passwd (= 3.6.7), bash (= 5.2.37-1.1+b2), binutils (= 2.44-3), binutils-arm-linux-gnueabihf (= 2.44-3), binutils-common (= 2.44-3), bsdextrautils (= 2.41-3), bsdutils (= 1:2.41-3), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.6-2), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-arm-linux-gnueabihf (= 14.2.0-19), cpp-arm-linux-gnueabihf (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 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(= 2.41-6), libc6-dev (= 2.41-6), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-4), libcc1-0 (= 14.2.0-19), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.278), libdebhelper-perl (= 13.24.2), libdivsufsort-dev (= 2.0.1-6+b1), libdivsufsort3 (= 2.0.1-6+b1), libdpkg-perl (= 1.22.18), libelf1t64 (= 0.192-4), libexpat1 (= 2.7.1-1), libffi8 (= 3.4.7-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-19), libisl23 (= 0.27-1), libjansson4 (= 2.14-2+b3), liblastlog2-2 (= 2.41-3), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-4), libmagic1t64 (= 1:5.46-4), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-3), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 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patch (= 2.7.6-7), perl (= 5.40.1-2), perl-base (= 5.40.1-2), perl-modules-5.40 (= 5.40.1-2), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.2-2), python3-minimal (= 3.13.2-2), python3.13 (= 3.13.2-3), python3.13-minimal (= 3.13.2-3), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-1), util-linux (= 2.41-3), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1744076913" +------------------------------------------------------------------------------+ | Package contents Sat, 26 Jul 2025 01:53:50 +0000 | +------------------------------------------------------------------------------+ hmmer-examples_3.4+dfsg-2+b2_armhf.deb -------------------------------------- new Debian package, version 2.0. size 31325840 bytes: control archive=18168 bytes. 880 bytes, 22 lines control 68270 bytes, 742 lines md5sums Package: hmmer-examples Source: hmmer (3.4+dfsg-2) Version: 3.4+dfsg-2+b2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 32319 Depends: libperl4-corelibs-perl Section: doc Priority: optional Multi-Arch: foreign Homepage: http://hmmer.org/ Description: profile hidden Markov models for protein sequence analysis (examples) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains example files to test the hmmer package. drwxr-xr-x root/root 0 2025-04-08 01:48 ./ drwxr-xr-x root/root 0 2025-04-08 01:48 ./usr/ drwxr-xr-x root/root 0 2025-04-08 01:48 ./usr/share/ drwxr-xr-x root/root 0 2025-04-08 01:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-04-08 01:48 ./usr/share/doc/hmmer-examples/ -rw-r--r-- root/root 235 2025-04-08 01:48 ./usr/share/doc/hmmer-examples/changelog.Debian.armhf.gz -rw-r--r-- root/root 1165 2025-04-08 01:48 ./usr/share/doc/hmmer-examples/changelog.Debian.gz -rw-r--r-- root/root 5159 2023-09-14 16:33 ./usr/share/doc/hmmer-examples/copyright drwxr-xr-x root/root 0 2025-04-08 01:48 ./usr/share/doc/hmmer/ drwxr-xr-x root/root 0 2025-04-08 01:48 ./usr/share/doc/hmmer/examples/ drwxr-xr-x root/root 0 2025-04-08 01:48 ./usr/share/doc/hmmer/examples/easel/ -rw-r--r-- root/root 117 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/.travis.yml -rw-r--r-- root/root 3642 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/LICENSE -rw-r--r-- root/root 4689 2025-04-08 01:48 ./usr/share/doc/hmmer/examples/easel/Makefile.gz -rw-r--r-- root/root 4427 2025-04-08 01:48 ./usr/share/doc/hmmer/examples/easel/Makefile.in.gz -rw-r--r-- root/root 1697 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/README.md -rw-r--r-- root/root 14946 2025-04-08 01:48 ./usr/share/doc/hmmer/examples/easel/config.guess.gz -rw-r--r-- root/root 11857 2025-04-08 01:48 ./usr/share/doc/hmmer/examples/easel/config.sub.gz -rw-r--r-- root/root 7049 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/configure.ac.gz -rw-r--r-- root/root 571 2025-04-08 01:48 ./usr/share/doc/hmmer/examples/easel/decoy_config.h -rw-r--r-- root/root 494 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/decoy_config.h.in drwxr-xr-x root/root 0 2025-04-08 01:48 ./usr/share/doc/hmmer/examples/easel/demotic/ -rw-r--r-- root/root 1434 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/00README.gz -rwxr-xr-x 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./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.asnt.gz -rw-r--r-- root/root 32076 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.gz -rw-r--r-- root/root 2924 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.phr.gz -rw-r--r-- root/root 1344 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.pin -rw-r--r-- root/root 28195 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.psq.gz -rw-r--r-- root/root 40593 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.pbl.gz -rw-r--r-- root/root 39592 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.sto.gz -rw-r--r-- root/root 737 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.fa -rw-r--r-- root/root 69751 2023-08-13 08:10 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./usr/share/doc/hmmer/examples/tutorial/globins45.fa +------------------------------------------------------------------------------+ | Post Build Sat, 26 Jul 2025 01:53:52 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 26 Jul 2025 01:53:52 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 26 Jul 2025 01:53:54 +0000 | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 322792 Build-Time: 233 Distribution: unstable Host Architecture: armhf Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdSJpq6d/inputs/hmmer_3.4+dfsg-2.dsc Machine Architecture: arm64 Package: hmmer Package-Time: 252 Source-Version: 3.4+dfsg-2 Space: 322792 Status: successful Version: 3.4+dfsg-2+b2 -------------------------------------------------------------------------------- Finished at 2025-07-26T01:53:48Z Build needed 00:04:12, 322792k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdSJpq6d/out size differs for hmmer-examples_3.4+dfsg-2+b2_armhf.deb checking hmmer-examples_3.4+dfsg-2+b2_armhf.deb: