=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdejE8Ia/inputs/hmmer_3.4+dfsg-3_armhf.buildinfo Source: hmmer Version: 3.4+dfsg-3 rebuilderd-worker node: codethink01-arm64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 24 Oct 2025 01:34:44 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [55.8 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [147 kB] Get:7 https://deb.debian.org/debian sid InRelease [207 kB] Get:8 https://deb.debian.org/debian experimental InRelease [101 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6536 B] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [86.7 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [88.8 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [1052 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [60.8 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7128 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [9088 B] Get:20 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2572 B] Get:22 https://deb.debian.org/debian experimental/main Sources [412 kB] Fetched 33.8 MB in 3s (10.1 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-3.dsc' hmmer_3.4+dfsg-3.dsc 1774 SHA256:ed6f9a78f0395e7ae7bd682a72b3b6a3553508fc5be636186dc71e1eee988278 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg.orig.tar.xz' hmmer_3.4+dfsg.orig.tar.xz 13297988 SHA256:87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-3.debian.tar.xz' hmmer_3.4+dfsg-3.debian.tar.xz 12996 SHA256:3864769123ce5f52fca65a9fad242e1930dc813e28baca4d09075d143379deda 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 hmmer_3.4+dfsg.orig.tar.xz 3864769123ce5f52fca65a9fad242e1930dc813e28baca4d09075d143379deda hmmer_3.4+dfsg-3.debian.tar.xz ed6f9a78f0395e7ae7bd682a72b3b6a3553508fc5be636186dc71e1eee988278 hmmer_3.4+dfsg-3.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 24 Oct 2025 01:34:49 +0000 | +------------------------------------------------------------------------------+ Rebuilding hmmer=3.4+dfsg-3 in /srv/rebuilderd/tmp/rebuilderdejE8Ia/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdejE8Ia/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdejE8Ia/inputs/hmmer_3.4+dfsg-3_armhf.buildinfo /srv/rebuilderd/tmp/rebuilderdejE8Ia/inputs/hmmer_3.4+dfsg-3_armhf.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/hmmer-3.4+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid InRelease [207 kB] Get:2 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf Packages [9670 kB] Fetched 9877 kB in 1s (9124 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250929T143752Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf perl-base armhf 5.40.1-6 [1515 kB] Fetched 1515 kB in 0s (51.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe8cns6aj/perl-base_5.40.1-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf g++-15-arm-linux-gnueabihf armhf 15.2.0-4 [79.8 MB] Fetched 79.8 MB in 0s (207 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsjsg_o9x/g++-15-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf rpcsvc-proto armhf 1.4.3-1 [58.7 kB] Fetched 58.7 kB in 0s (5279 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_efw7k7z/rpcsvc-proto_1.4.3-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (738 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_lkupje9/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (766 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpff2lsys_/dh-autoreconf_21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libexpat1 armhf 2.7.3-1 [91.0 kB] Fetched 91.0 kB in 0s (5255 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdzc34gbi/libexpat1_2.7.3-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libgcc-s1 armhf 15.2.0-4 [37.0 kB] Fetched 37.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprilknnjg/libgcc-s1_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf autopoint all 0.23.1-2 [770 kB] Fetched 770 kB in 0s (34.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpef3g5rks/autopoint_0.23.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libmagic1t64 armhf 1:5.46-5 [100 kB] Fetched 100 kB in 0s (5906 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_armhf.deb' to '/srv/rebuilderd/tmp/tmpde105dsz/libmagic1t64_5.46-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libuchardet0 armhf 0.0.8-2 [65.4 kB] Fetched 65.4 kB in 0s (3989 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgsmykhis/libuchardet0_0.0.8-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf gettext-base armhf 0.23.1-2+b1 [239 kB] Fetched 239 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpstxd8_t1/gettext-base_0.23.1-2+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libselinux1 armhf 3.8.1-1 [74.8 kB] Fetched 74.8 kB in 0s (4632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbh7299jk/libselinux1_3.8.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libgmp10 armhf 2:6.3.0+dfsg-5 [513 kB] Fetched 513 kB in 0s (24.9 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5_armhf.deb' to '/srv/rebuilderd/tmp/tmp9te12dhk/libgmp10_6.3.0+dfsg-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf cpp armhf 4:15.2.0-4 [1572 B] Fetched 1572 B in 0s (96.1 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpv39ejimp/cpp_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libncursesw6 armhf 6.5+20250216-2 [110 kB] Fetched 110 kB in 0s (4296 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3rlaxtfm/libncursesw6_6.5+20250216-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf openssl-provider-legacy armhf 3.5.3-1 [300 kB] Fetched 300 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc52qjfun/openssl-provider-legacy_3.5.3-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libperl5.40 armhf 5.40.1-6 [3624 kB] Fetched 3624 kB in 0s (79.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6824pe96/libperl5.40_5.40.1-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libjansson4 armhf 2.14-2+b3 [35.5 kB] Fetched 35.5 kB in 0s (1371 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmzfqxp57/libjansson4_2.14-2+b3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libdivsufsort3 armhf 2.0.1-6+b1 [45.0 kB] Fetched 45.0 kB in 0s (2734 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9468zys5/libdivsufsort3_2.0.1-6+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf xz-utils armhf 5.8.1-1.1 [657 kB] Fetched 657 kB in 0s (30.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpugejiu0g/xz-utils_5.8.1-1.1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf base-passwd armhf 3.6.7 [52.5 kB] Fetched 52.5 kB in 0s (2048 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgpavinum/base-passwd_3.6.7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf g++-15 armhf 15.2.0-4 [23.4 kB] Fetched 23.4 kB in 0s (1423 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp96l5y4sx/g++-15_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libaudit1 armhf 1:4.1.2-1 [54.2 kB] Fetched 54.2 kB in 0s (3242 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpju_kih9x/libaudit1_4.1.2-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libreadline8t64 armhf 8.3-3 [156 kB] Fetched 156 kB in 0s (5248 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp00livjky/libreadline8t64_8.3-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf liblzma5 armhf 5.8.1-1.1 [296 kB] Fetched 296 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpav0om1s2/liblzma5_5.8.1-1.1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libmpc3 armhf 1.3.1-2 [43.8 kB] Fetched 43.8 kB in 0s (2096 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9w3cuulv/libmpc3_1.3.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf binutils-arm-linux-gnueabihf armhf 2.45-7 [857 kB] Fetched 857 kB in 0s (68.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdu9xytyr/binutils-arm-linux-gnueabihf_2.45-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf python3.13-minimal armhf 3.13.7-1 [1847 kB] Fetched 1847 kB in 0s (99.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_xjtetqm/python3.13-minimal_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libsframe2 armhf 2.45-7 [77.0 kB] Fetched 77.0 kB in 0s (3799 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ne4gjah/libsframe2_2.45-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpam0g armhf 1.7.0-5 [64.5 kB] Fetched 64.5 kB in 0s (3941 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_p59fcd0/libpam0g_1.7.0-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-4 [81.4 MB] Fetched 81.4 MB in 0s (207 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9sj4fivn/gcc-15-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libcrypt1 armhf 1:4.4.38-1 [95.6 kB] Fetched 95.6 kB in 0s (5698 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpi3zh84qg/libcrypt1_4.4.38-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libuuid1 armhf 2.41.2-2 [37.2 kB] Fetched 37.2 kB in 0s (2335 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn21p1fet/libuuid1_2.41.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf build-essential armhf 12.12 [4624 B] Fetched 4624 B in 0s (288 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6mteoog8/build-essential_12.12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf linux-libc-dev all 6.16.9-1 [2543 kB] Fetched 2543 kB in 0s (68.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn8je2vhr/linux-libc-dev_6.16.9-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libgdbm-compat4t64 armhf 1.26-1 [52.6 kB] Fetched 52.6 kB in 0s (3146 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgnxne0zy/libgdbm-compat4t64_1.26-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf binutils-common armhf 2.45-7 [2558 kB] Fetched 2558 kB in 0s (70.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv329og5i/binutils-common_2.45-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf bzip2 armhf 1.0.8-6 [39.4 kB] Fetched 39.4 kB in 0s (2382 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkxwxaml9/bzip2_1.0.8-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf python3 armhf 3.13.7-1 [28.3 kB] Fetched 28.3 kB in 0s (1731 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpknblnowe/python3_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (1216 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj3ezrr5_/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libc6-dev armhf 2.41-12 [1327 kB] Fetched 1327 kB in 0s (49.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5a5llxo/libc6-dev_2.41-12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libcap-ng0 armhf 0.8.5-4+b1 [16.1 kB] Fetched 16.1 kB in 0s (990 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfdsek0no/libcap-ng0_0.8.5-4+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf gcc-15-base armhf 15.2.0-4 [52.8 kB] Fetched 52.8 kB in 0s (3233 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpta956u6p/gcc-15-base_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libtool all 2.5.4-5 [540 kB] Fetched 540 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_o4wwig/libtool_2.5.4-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpam-modules-bin armhf 1.7.0-5 [45.2 kB] Fetched 45.2 kB in 0s (2810 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp20f7rnm9/libpam-modules-bin_1.7.0-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8qp9qs2m/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf gcc armhf 4:15.2.0-4 [5152 B] Fetched 5152 B in 0s (318 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpgnzyzno4/gcc_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libattr1 armhf 1:2.5.2-3 [22.0 kB] Fetched 22.0 kB in 0s (1344 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_armhf.deb' to '/srv/rebuilderd/tmp/tmp7cta56zh/libattr1_2.5.2-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libgdbm6t64 armhf 1.26-1 [74.4 kB] Fetched 74.4 kB in 0s (4359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1zeiqv41/libgdbm6t64_1.26-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libtinfo6 armhf 6.5+20250216-2 [333 kB] Fetched 333 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyna1uf1_/libtinfo6_6.5+20250216-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libgcc-15-dev armhf 15.2.0-4 [768 kB] Fetched 768 kB in 0s (34.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptakjw37k/libgcc-15-dev_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (855 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpng34k1_v/libaudit-common_4.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4 [1444 B] Fetched 1444 B in 0s (87.5 kB/s) dpkg-name: info: moved 'gcc-arm-linux-gnueabihf_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmph8h8m7yk/gcc-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libudev1 armhf 258-1 [146 kB] Fetched 146 kB in 0s (8117 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ou0eyci/libudev1_258-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf gettext armhf 0.23.1-2+b1 [1560 kB] Fetched 1560 kB in 0s (53.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp830z3qup/gettext_0.23.1-2+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libisl23 armhf 0.27-1 [517 kB] Fetched 517 kB in 0s (24.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphoxw3_a5/libisl23_0.27-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libstdc++-15-dev armhf 15.2.0-4 [2409 kB] Fetched 2409 kB in 0s (66.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj8664oaz/libstdc++-15-dev_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libsystemd0 armhf 258-1 [429 kB] Fetched 429 kB in 0s (21.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgvdthd1/libsystemd0_258-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf sed armhf 4.9-2 [321 kB] Fetched 321 kB in 0s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfqyjqkqn/sed_4.9-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libxml2-16 armhf 2.14.5+dfsg-0.2 [553 kB] Fetched 553 kB in 0s (26.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxttra1e/libxml2-16_2.14.5+dfsg-0.2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (48.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpazdunaq2/dpkg-dev_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpython3.13-stdlib armhf 3.13.7-1 [1833 kB] Fetched 1833 kB in 0s (58.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxykw426_/libpython3.13-stdlib_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpogq649sq/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf python3.13 armhf 3.13.7-1 [761 kB] Fetched 761 kB in 0s (34.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8x8v0o59/python3.13_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf debianutils armhf 5.23.2 [91.4 kB] Fetched 91.4 kB in 0s (5438 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa5m0oywd/debianutils_5.23.2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libcap2 armhf 1:2.75-10+b1 [24.8 kB] Fetched 24.8 kB in 0s (1463 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b1_armhf.deb' to '/srv/rebuilderd/tmp/tmpoga7cu_o/libcap2_2.75-10+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf sysvinit-utils armhf 3.14-4 [32.8 kB] Fetched 32.8 kB in 0s (1930 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8a7f0xzd/sysvinit-utils_3.14-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpython3.13-minimal armhf 3.13.7-1 [850 kB] Fetched 850 kB in 0s (36.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjke7s8oz/libpython3.13-minimal_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1332 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9uvukgij/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu616q8lw/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libc-bin armhf 2.41-12 [523 kB] Fetched 523 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1fekn16x/libc-bin_2.41-12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libmagic-mgc armhf 1:5.46-5 [338 kB] Fetched 338 kB in 0s (17.3 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_armhf.deb' to '/srv/rebuilderd/tmp/tmpga89bv_n/libmagic-mgc_5.46-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf binutils armhf 2.45-7 [69.6 kB] Fetched 69.6 kB in 0s (4129 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2lfq0srw/binutils_2.45-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (540 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ivy25og/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libsmartcols1 armhf 2.41.2-2 [129 kB] Fetched 129 kB in 0s (7098 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi6y6q98q/libsmartcols1_2.41.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (7144 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkvujqp4m/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf gcc-15 armhf 15.2.0-4 [491 kB] Fetched 491 kB in 0s (24.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4i7lsuzc/gcc-15_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf tzdata all 2025b-5 [260 kB] Fetched 260 kB in 0s (13.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeibjdyhq/tzdata_2025b-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpcre2-8-0 armhf 10.46-1 [259 kB] Fetched 259 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7sugyeq/libpcre2-8-0_10.46-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (6057 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmple95iq2y/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libcc1-0 armhf 15.2.0-4 [32.5 kB] Fetched 32.5 kB in 0s (1640 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5s3d97gh/libcc1-0_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf coreutils armhf 9.7-3 [2869 kB] Fetched 2869 kB in 0s (65.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxjcsg6gn/coreutils_9.7-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libc6 armhf 2.41-12 [2249 kB] Fetched 2249 kB in 0s (61.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi6wqbb8l/libc6_2.41-12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libcrypt-dev armhf 1:4.4.38-1 [125 kB] Fetched 125 kB in 0s (7099 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_armhf.deb' to '/srv/rebuilderd/tmp/tmp6r3_adhs/libcrypt-dev_4.4.38-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (2383 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyx3b88py/init-system-helpers_1.69_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf bsdextrautils armhf 2.41.2-2 [90.3 kB] Fetched 90.3 kB in 0s (5374 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn1olazkc/bsdextrautils_2.41.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-4 [74.8 MB] Fetched 74.8 MB in 0s (233 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8aqhsik0/cpp-15-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf mawk armhf 1.3.4.20250131-1 [131 kB] Fetched 131 kB in 0s (7506 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfgwost6y/mawk_1.3.4.20250131-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf python3-minimal armhf 3.13.7-1 [27.2 kB] Fetched 27.2 kB in 0s (1710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1l_6o4hs/python3-minimal_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (37.4 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmp64tmm414/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf g++ armhf 4:15.2.0-4 [1328 B] Fetched 1328 B in 0s (83.1 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmp8zmvdxlf/g++_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf make armhf 4.4.1-2 [449 kB] Fetched 449 kB in 0s (21.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm4k2cdfe/make_4.4.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf util-linux armhf 2.41.2-2 [1075 kB] Fetched 1075 kB in 0s (42.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpywobjx7j/util-linux_2.41.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf tar armhf 1.35+dfsg-3.1 [794 kB] Fetched 794 kB in 0s (35.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpct2y3mp7/tar_1.35+dfsg-3.1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf readline-common all 8.3-3 [74.8 kB] Fetched 74.8 kB in 0s (4469 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2chn27p7/readline-common_8.3-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libacl1 armhf 2.3.2-2+b1 [30.0 kB] Fetched 30.0 kB in 0s (1886 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk8fzrjlm/libacl1_2.3.2-2+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (30.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgl9h4zw1/libdpkg-perl_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libatomic1 armhf 15.2.0-4 [7220 B] Fetched 7220 B in 0s (456 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk7b5r130/libatomic1_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libctf0 armhf 2.45-7 [62.5 kB] Fetched 62.5 kB in 0s (3815 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ma622ua/libctf0_2.45-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libstdc++6 armhf 15.2.0-4 [623 kB] Fetched 623 kB in 0s (30.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp349c_pdz/libstdc++6_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf grep armhf 3.12-1 [433 kB] Fetched 433 kB in 0s (22.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg987am62/grep_3.12-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Fetched 35.0 kB in 0s (2173 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuzuqppm3/libpipeline1_1.5.8-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf dwz armhf 0.16-2 [104 kB] Fetched 104 kB in 0s (6213 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpki47v_tq/dwz_0.16-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libasan8 armhf 15.2.0-4 [2633 kB] Fetched 2633 kB in 0s (69.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvj180owh/libasan8_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [602 kB] Fetched 602 kB in 0s (28.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgpe5swe6/libdb5.3t64_5.3.28+dfsg2-9_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libmpfr6 armhf 4.2.2-2 [605 kB] Fetched 605 kB in 0s (28.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu44a8ry2/libmpfr6_4.2.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libffi8 armhf 3.5.2-2 [20.6 kB] Fetched 20.6 kB in 0s (1259 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4kdg8b1_/libffi8_3.5.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf ncurses-bin armhf 6.5+20250216-2 [429 kB] Fetched 429 kB in 0s (21.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpixstg4xg/ncurses-bin_6.5+20250216-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libubsan1 armhf 15.2.0-4 [1075 kB] Fetched 1075 kB in 0s (43.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbq51_mzh/libubsan1_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf cpp-15 armhf 15.2.0-4 [1280 B] Fetched 1280 B in 0s (76.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9dvcbvm/cpp-15_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libseccomp2 armhf 2.6.0-2 [49.3 kB] Fetched 49.3 kB in 0s (2979 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdgvf1vza/libseccomp2_2.6.0-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libc-dev-bin armhf 2.41-12 [56.8 kB] Fetched 56.8 kB in 0s (3447 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqv336jhe/libc-dev-bin_2.41-12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf man-db armhf 2.13.1-1 [1432 kB] Fetched 1432 kB in 0s (50.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzaze95d9/man-db_2.13.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf patch armhf 2.8-2 [128 kB] Fetched 128 kB in 0s (7328 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhue98lq/patch_2.8-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libzstd1 armhf 1.5.7+dfsg-1.1 [264 kB] Fetched 264 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp05j3_glb/libzstd1_1.5.7+dfsg-1.1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libmd0 armhf 1.1.0-2+b1 [31.9 kB] Fetched 31.9 kB in 0s (1951 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphz4le_bo/libmd0_1.1.0-2+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf perl armhf 5.40.1-6 [267 kB] Fetched 267 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i4hbvbj/perl_5.40.1-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf debhelper all 13.28 [941 kB] Fetched 941 kB in 0s (40.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe12oupr9/debhelper_13.28_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libdivsufsort-dev armhf 2.0.1-6+b1 [19.1 kB] Fetched 19.1 kB in 0s (1172 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa2y5aphp/libdivsufsort-dev_2.0.1-6+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf bash armhf 5.3-1 [1485 kB] Fetched 1485 kB in 0s (53.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkie1mgkj/bash_5.3-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf zlib1g armhf 1:1.3.dfsg+really1.3.1-1+b1 [75.2 kB] Fetched 75.2 kB in 0s (4492 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb' to '/srv/rebuilderd/tmp/tmp89gjcb39/zlib1g_1.3.dfsg+really1.3.1-1+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf perl-modules-5.40 all 5.40.1-6 [3019 kB] Fetched 3019 kB in 0s (72.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw1lg8g4b/perl-modules-5.40_5.40.1-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf findutils armhf 4.10.0-3 [687 kB] Fetched 687 kB in 0s (30.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphkfkiil7/findutils_4.10.0-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4 [5304 B] Fetched 5304 B in 0s (327 kB/s) dpkg-name: info: moved 'cpp-arm-linux-gnueabihf_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpsffoonpk/cpp-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf dash armhf 0.5.12-12 [90.4 kB] Fetched 90.4 kB in 0s (5331 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcytnxj9n/dash_0.5.12-12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (3614 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr9iwnge_/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf g++-arm-linux-gnueabihf armhf 4:15.2.0-4 [1200 B] Fetched 1200 B in 0s (73.4 kB/s) dpkg-name: info: moved 'g++-arm-linux-gnueabihf_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpj2wz51v_/g++-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libelf1t64 armhf 0.193-3 [184 kB] Fetched 184 kB in 0s (9840 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpad93mis9/libelf1t64_0.193-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libsqlite3-0 armhf 3.46.1-8 [808 kB] Fetched 808 kB in 0s (35.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphcnwl84q/libsqlite3-0_3.46.1-8_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf gzip armhf 1.13-1 [134 kB] Fetched 134 kB in 0s (7581 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxcj8t_m/gzip_1.13-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf file armhf 1:5.46-5 [42.8 kB] Fetched 42.8 kB in 0s (2583 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_armhf.deb' to '/srv/rebuilderd/tmp/tmpa4mzo_yz/file_5.46-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf dpkg armhf 1.22.21 [1488 kB] Fetched 1488 kB in 0s (52.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpefrp5d0k/dpkg_1.22.21_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcuxtzrp0/autoconf_2.72-3.1_all.deb' Downloading dependency 1 of 152: perl-base:armhf=5.40.1-6 Downloading dependency 2 of 152: g++-15-arm-linux-gnueabihf:armhf=15.2.0-4 Downloading dependency 3 of 152: rpcsvc-proto:armhf=1.4.3-1 Downloading dependency 4 of 152: netbase:armhf=6.5 Downloading dependency 5 of 152: dh-autoreconf:armhf=21 Downloading dependency 6 of 152: libexpat1:armhf=2.7.3-1 Downloading dependency 7 of 152: libgcc-s1:armhf=15.2.0-4 Downloading dependency 8 of 152: autopoint:armhf=0.23.1-2 Downloading dependency 9 of 152: libmagic1t64:armhf=1:5.46-5 Downloading dependency 10 of 152: libuchardet0:armhf=0.0.8-2 Downloading dependency 11 of 152: gettext-base:armhf=0.23.1-2+b1 Downloading dependency 12 of 152: libselinux1:armhf=3.8.1-1 Downloading dependency 13 of 152: libgmp10:armhf=2:6.3.0+dfsg-5 Downloading dependency 14 of 152: cpp:armhf=4:15.2.0-4 Downloading dependency 15 of 152: libncursesw6:armhf=6.5+20250216-2 Downloading dependency 16 of 152: openssl-provider-legacy:armhf=3.5.3-1 Downloading dependency 17 of 152: libperl5.40:armhf=5.40.1-6 Downloading dependency 18 of 152: libjansson4:armhf=2.14-2+b3 Downloading dependency 19 of 152: libdivsufsort3:armhf=2.0.1-6+b1 Downloading dependency 20 of 152: xz-utils:armhf=5.8.1-1.1 Downloading dependency 21 of 152: base-passwd:armhf=3.6.7 Downloading dependency 22 of 152: g++-15:armhf=15.2.0-4 Downloading dependency 23 of 152: libaudit1:armhf=1:4.1.2-1 Downloading dependency 24 of 152: libreadline8t64:armhf=8.3-3 Downloading dependency 25 of 152: liblzma5:armhf=5.8.1-1.1 Downloading dependency 26 of 152: libmpc3:armhf=1.3.1-2 Downloading dependency 27 of 152: binutils-arm-linux-gnueabihf:armhf=2.45-7 Downloading dependency 28 of 152: python3.13-minimal:armhf=3.13.7-1 Downloading dependency 29 of 152: libsframe2:armhf=2.45-7 Downloading dependency 30 of 152: libpam0g:armhf=1.7.0-5 Downloading dependency 31 of 152: gcc-15-arm-linux-gnueabihf:armhf=15.2.0-4 Downloading dependency 32 of 152: libcrypt1:armhf=1:4.4.38-1 Downloading dependency 33 of 152: libuuid1:armhf=2.41.2-2 Downloading dependency 34 of 152: build-essential:armhf=12.12 Downloading dependency 35 of 152: linux-libc-dev:armhf=6.16.9-1 Downloading dependency 36 of 152: libgdbm-compat4t64:armhf=1.26-1 Downloading dependency 37 of 152: binutils-common:armhf=2.45-7 Downloading dependency 38 of 152: bzip2:armhf=1.0.8-6 Downloading dependency 39 of 152: python3:armhf=3.13.7-1 Downloading dependency 40 of 152: libfile-stripnondeterminism-perl:armhf=1.15.0-1 Downloading dependency 41 of 152: libc6-dev:armhf=2.41-12 Downloading dependency 42 of 152: libcap-ng0:armhf=0.8.5-4+b1 Downloading dependency 43 of 152: gcc-15-base:armhf=15.2.0-4 Downloading dependency 44 of 152: libtool:armhf=2.5.4-5 Downloading dependency 45 of 152: libpam-modules-bin:armhf=1.7.0-5 Downloading dependency 46 of 152: ncurses-base:armhf=6.5+20250216-2 Downloading dependency 47 of 152: gcc:armhf=4:15.2.0-4 Downloading dependency 48 of 152: libattr1:armhf=1:2.5.2-3 Downloading dependency 49 of 152: libgdbm6t64:armhf=1.26-1 Downloading dependency 50 of 152: libtinfo6:armhf=6.5+20250216-2 Downloading dependency 51 of 152: libgcc-15-dev:armhf=15.2.0-4 Downloading dependency 52 of 152: libaudit-common:armhf=1:4.1.2-1 Downloading dependency 53 of 152: gcc-arm-linux-gnueabihf:armhf=4:15.2.0-4 Downloading dependency 54 of 152: libudev1:armhf=258-1 Downloading dependency 55 of 152: gettext:armhf=0.23.1-2+b1 Downloading dependency 56 of 152: libisl23:armhf=0.27-1 Downloading dependency 57 of 152: libstdc++-15-dev:armhf=15.2.0-4 Downloading dependency 58 of 152: libsystemd0:armhf=258-1 Downloading dependency 59 of 152: sed:armhf=4.9-2 Downloading dependency 60 of 152: libxml2-16:armhf=2.14.5+dfsg-0.2 Downloading dependency 61 of 152: dpkg-dev:armhf=1.22.21 Downloading dependency 62 of 152: libpython3.13-stdlib:armhf=3.13.7-1 Downloading dependency 63 of 152: po-debconf:armhf=1.0.21+nmu1 Downloading dependency 64 of 152: python3.13:armhf=3.13.7-1 Downloading dependency 65 of 152: debianutils:armhf=5.23.2 Downloading dependency 66 of 152: libcap2:armhf=1:2.75-10+b1 Downloading dependency 67 of 152: sysvinit-utils:armhf=3.14-4 Downloading dependency 68 of 152: libpython3.13-minimal:armhf=3.13.7-1 Downloading dependency 69 of 152: intltool-debian:armhf=0.35.0+20060710.6 Downloading dependency 70 of 152: libpam-runtime:armhf=1.7.0-5 Downloading dependency 71 of 152: libc-bin:armhf=2.41-12 Downloading dependency 72 of 152: libmagic-mgc:armhf=1:5.46-5 Downloading dependency 73 of 152: binutils:armhf=2.45-7 Downloading dependency 74 of 152: dh-strip-nondeterminism:armhf=1.15.0-1 Downloading dependency 75 of 152: libsmartcols1:armhf=2.41.2-2 Downloading dependency 76 of 152: debconf:armhf=1.5.91 Downloading dependency 77 of 152: gcc-15:armhf=15.2.0-4 Downloading dependency 78 of 152: tzdata:armhf=2025b-5 Downloading dependency 79 of 152: libpcre2-8-0:armhf=10.46-1 Downloading dependency 80 of 152: libarchive-zip-perl:armhf=1.68-1 Downloading dependency 81 of 152: libcc1-0:armhf=15.2.0-4 Downloading dependency 82 of 152: coreutils:armhf=9.7-3 Downloading dependency 83 of 152: libc6:armhf=2.41-12 Downloading dependency 84 of 152: libcrypt-dev:armhf=1:4.4.38-1 Downloading dependency 85 of 152: init-system-helpers:armhf=1.69 Downloading dependency 86 of 152: bsdextrautils:armhf=2.41.2-2 Downloading dependency 87 of 152: cpp-15-arm-linux-gnueabihf:armhf=15.2.0-4 Downloading dependency 88 of 152: mawk:armhf=1.3.4.20250131-1 Downloading dependency 89 of 152: python3-minimal:armhf=3.13.7-1 Downloading dependency 90 of 152: automake:armhf=1:1.17-4 Downloading dependency 91 of 152: g++:armhf=4:15.2.0-4 Downloading dependency 92 of 152: make:armhf=4.4.1-2 Downloading dependency 93 of 152: util-linux:armhf=2.41.2-2 Downloading dependency 94 of 152: tar:armhf=1.35+dfsg-3.1 Downloading dependency 95 of 152: readline-common:armhf=8.3-3 Downloading dependency 96 of 152: libacl1:armhf=2.3.2-2+b1 Downloading dependency 97 of 152: libdpkg-perl:armhf=1.22.21 Downloading dependency 98 of 152: libatomic1:armhf=15.2.0-4 Downloading dependency 99 of 152: libctf0:armhf=2.45-7 Downloading dependency 100 of 152: libstdc++6:armhf=15.2.0-4 Downloading dependency 101 of 152: grep:armhf=3.12-1 Downloading dependency 102 of 152: libpipeline1:armhf=1.5.8-1 Downloading dependency 103 of 152: dwz:armhf=0.16-2 Downloading dependency 104 of 152: libasan8:armhf=15.2.0-4 Downloading dependency 105 of 152: libdb5.3t64:armhf=5.3.28+dfsg2-9 Downloading dependency 106 of 152: libmpfr6:armhf=4.2.2-2 Downloading dependency 107 of 152: libffi8:armhf=3.5.2-2 Downloading dependency 108 of 152: ncurses-bin:armhf=6.5+20250216-2 Downloading dependency 109 of 152: libubsan1:armhf=15.2.0-4 Downloading dependency 110 of 152: cpp-15:armhf=15.2.0-4 Downloading dependency 111 of 152: libseccomp2:armhf=2.6.0-2 Downloading dependency 112 of 152: libc-dev-bin:armhf=2.41-12 Downloading dependency 113 of 152: man-db:armhf=2.13.1-1 Downloading dependency 114 of 152: patch:armhf=2.8-2 Downloading dependency 115 of 152: libzstd1:armhf=1.5.7+dfsg-1.1 Downloading dependency 116 of 152: libmd0:armhf=1.1.0-2+b1 Downloading dependency 117 of 152: perl:armhf=5.40.1-6 Downloading dependency 118 of 152: debhelper:armhf=13.28 Downloading dependency 119 of 152: libdivsufsort-dev:armhf=2.0.1-6+b1 Downloading dependency 120 of 152: bash:armhf=5.3-1 Downloading dependency 121 of 152: zlib1g:armhf=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 122 of 152: perl-modules-5.40:armhf=5.40.1-6 Downloading dependency 123 of 152: findutils:armhf=4.10.0-3 Downloading dependency 124 of 152: cpp-arm-linux-gnueabihf:armhf=4:15.2.0-4 Downloading dependency 125 of 152: dash:armhf=0.5.12-12 Downloading dependency 126 of 152: autotools-dev:armhf=20240727.1 Downloading dependency 127 of 152: g++-arm-linux-gnueabihf:armhf=4:15.2.0-4 Downloading dependency 128 of 152: libelf1t64:armhf=0.193-3 Downloading dependency 129 of 152: libsqlite3-0:armhf=3.46.1-8 Downloading dependency 130 of 152: gzip:armhf=1.13-1 Downloading dependency 131 of 152: file:armhf=1:5.46-5 Downloading dependency 132 of 152: dpkg:armhf=1.22.21 Downloading dependency 133 of 152: autoconf:armhf=2.72-3.1 Downloading dependency 134 of 152: libpam-modules:armhf=1.7.0-5Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpam-modules armhf 1.7.0-5 [164 kB] Fetched 164 kB in 0s (9389 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv01f5rkq/libpam-modules_1.7.0-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libblkid1 armhf 2.41.2-2 [158 kB] Fetched 158 kB in 0s (8935 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo7sadnbv/libblkid1_2.41.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libmount1 armhf 2.41.2-2 [191 kB] Fetched 191 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ubfg1z_/libmount1_2.41.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf m4 armhf 1.4.20-1 [303 kB] Fetched 303 kB in 0s (15.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_qotzfrc/m4_1.4.20-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libbinutils armhf 2.45-7 [347 kB] Fetched 347 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiwpi45i4/libbinutils_2.45-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libbz2-1.0 armhf 1.0.8-6 [35.0 kB] Fetched 35.0 kB in 0s (2086 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4spfpg97/libbz2-1.0_1.0.8-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libpython3-stdlib armhf 3.13.7-1 [10.2 kB] Fetched 10.2 kB in 0s (622 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgyj4jy_e/libpython3-stdlib_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf base-files armhf 14 [72.9 kB] Fetched 72.9 kB in 0s (4236 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbc54zxz5/base-files_14_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libssl3t64 armhf 3.5.3-1 [1987 kB] Fetched 1987 kB in 0s (60.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0dbys8af/libssl3t64_3.5.3-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (1772 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6hj0b3x2/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf diffutils armhf 1:3.10-4 [369 kB] Fetched 369 kB in 0s (18.9 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpt3r0qy7z/diffutils_3.10-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf groff-base armhf 1.23.0-9 [1092 kB] Fetched 1092 kB in 0s (41.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3n4y_va9/groff-base_1.23.0-9_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libdebhelper-perl all 13.28 [92.4 kB] Fetched 92.4 kB in 0s (5322 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4y6u3k89/libdebhelper-perl_13.28_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libdebconfclient0 armhf 0.280 [10.3 kB] Fetched 10.3 kB in 0s (629 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7xil8cf/libdebconfclient0_0.280_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf hostname armhf 3.25 [10.0 kB] Fetched 10.0 kB in 0s (615 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmbs3xxxt/hostname_3.25_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (1603 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbesujw3/sensible-utils_0.0.26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libctf-nobfd0 armhf 2.45-7 [129 kB] Fetched 129 kB in 0s (7118 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp684m8nlj/libctf-nobfd0_2.45-7_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libunistring5 armhf 1.3-2 [441 kB] Fetched 441 kB in 0s (21.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuk4pvsg6/libunistring5_1.3-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20250929T143752Z sid/main armhf libgomp1 armhf 15.2.0-4 [115 kB] Fetched 115 kB in 0s (6598 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp56bnmqg1/libgomp1_15.2.0-4_armhf.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp2hi8k2z0/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: armhf is different from arm64 but can be executed natively I: using /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq 127.0.0.1 - - [24/Oct/2025 02:36:10] code 404, message File not found 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39099 ./ InRelease 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:39099 ./ Release [462 B] 127.0.0.1 - - [24/Oct/2025 02:36:10] code 404, message File not found 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39099 ./ Release.gpg 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:39099 ./ Packages [188 kB] Fetched 188 kB in 0s (5787 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./gcc-15-base_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libc6_2.41-12_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libgcc-s1_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./mawk_1.3.4.20250131-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./base-files_14_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libtinfo6_6.5%2b20250216-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./debianutils_5.23.2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./bash_5.3-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libacl1_2.3.2-2%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libattr1_2.5.2-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libcap2_2.75-10%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libgmp10_6.3.0%2bdfsg-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libpcre2-8-0_10.46-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libselinux1_3.8.1-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libzstd1_1.5.7%2bdfsg-1.1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libssl3t64_3.5.3-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./openssl-provider-legacy_3.5.3-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libsystemd0_258-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./coreutils_9.7-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./dash_0.5.12-12_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./diffutils_3.10-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libbz2-1.0_1.0.8-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./liblzma5_5.8.1-1.1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libmd0_1.1.0-2%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./tar_1.35%2bdfsg-3.1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./dpkg_1.22.21_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./findutils_4.10.0-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./grep_3.12-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./gzip_1.13-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./hostname_3.25_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./ncurses-bin_6.5%2b20250216-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libcrypt1_4.4.38-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./perl-base_5.40.1-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./sed_4.9-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libcap-ng0_0.8.5-4%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libaudit1_4.1.2-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libpam0g_1.7.0-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libpam-modules-bin_1.7.0-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libpam-modules_1.7.0-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libblkid1_2.41.2-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libmount1_2.41.2-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:10] "GET /./libsmartcols1_2.41.2-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./libudev1_258-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./libuuid1_2.41.2-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./util-linux_2.41.2-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./libdebconfclient0_0.280_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./base-passwd_3.6.7_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./libc-bin_2.41-12_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:11] "GET /./sysvinit-utils_3.14-4_armhf.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq 127.0.0.1 - - [24/Oct/2025 02:36:13] code 404, message File not found 127.0.0.1 - - [24/Oct/2025 02:36:13] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39099 ./ InRelease 127.0.0.1 - - [24/Oct/2025 02:36:13] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:39099 ./ Release 127.0.0.1 - - [24/Oct/2025 02:36:13] code 404, message File not found 127.0.0.1 - - [24/Oct/2025 02:36:13] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39099 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libexpat1_2.7.3-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libpython3.13-minimal_3.13.7-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./python3.13-minimal_3.13.7-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./python3-minimal_3.13.7-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./media-types_13.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./tzdata_2025b-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libffi8_3.5.2-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libncursesw6_6.5%2b20250216-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./readline-common_8.3-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libreadline8t64_8.3-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libsqlite3-0_3.46.1-8_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libpython3.13-stdlib_3.13.7-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./python3.13_3.13.7-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libpython3-stdlib_3.13.7-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./python3_3.13.7-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./sensible-utils_0.0.26_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libstdc%2b%2b6_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libuchardet0_0.0.8-2_armhf.deb HTTP/1.1" 200 - 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- [24/Oct/2025 02:36:21] "GET /./perl-modules-5.40_5.40.1-6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libgdbm-compat4t64_1.26-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libperl5.40_5.40.1-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./perl_5.40.1-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./xz-utils_5.8.1-1.1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./m4_1.4.20-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./autoconf_2.72-3.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./autotools-dev_20240727.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./automake_1.17-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./autopoint_0.23.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./binutils-common_2.45-7_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libsframe2_2.45-7_armhf.deb HTTP/1.1" 200 - 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127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libisl23_0.27-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libmpfr6_4.2.2-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libmpc3_1.3.1-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./cpp-15-arm-linux-gnueabihf_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./cpp-15_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./cpp-arm-linux-gnueabihf_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./cpp_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libcc1-0_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libgomp1_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libatomic1_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libasan8_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libubsan1_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./libgcc-15-dev_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:21] "GET /./gcc-15-arm-linux-gnueabihf_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./gcc-15_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./gcc-arm-linux-gnueabihf_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./gcc_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libstdc%2b%2b-15-dev_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./g%2b%2b-15-arm-linux-gnueabihf_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./g%2b%2b-15_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./g%2b%2b-arm-linux-gnueabihf_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./g%2b%2b_15.2.0-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./make_4.4.1-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libdpkg-perl_1.22.21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./patch_2.8-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./dpkg-dev_1.22.21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./build-essential_12.12_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libdebhelper-perl_13.28_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libtool_2.5.4-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./dh-autoreconf_21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libfile-stripnondeterminism-perl_1.15.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./dh-strip-nondeterminism_1.15.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libelf1t64_0.193-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./dwz_0.16-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libunistring5_1.3-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libxml2-16_2.14.5%2bdfsg-0.2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./gettext_0.23.1-2%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./debhelper_13.28_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libdivsufsort3_2.0.1-6%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./libdivsufsort-dev_2.0.1-6%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/Oct/2025 02:36:22] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp2hi8k2z0/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq Reading package lists... Building dependency tree... Reading state information... perl-base is already the newest version (5.40.1-6). g++-15-arm-linux-gnueabihf is already the newest version (15.2.0-4). g++-15-arm-linux-gnueabihf set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. libexpat1 is already the newest version (2.7.3-1). libexpat1 set to manually installed. libgcc-s1 is already the newest version (15.2.0-4). autopoint is already the newest version (0.23.1-2). autopoint set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. libuchardet0 is already the newest version (0.0.8-2). libuchardet0 set to manually installed. gettext-base is already the newest version (0.23.1-2+b1). gettext-base set to manually installed. libselinux1 is already the newest version (3.8.1-1). libgmp10 is already the newest version (2:6.3.0+dfsg-5). cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. openssl-provider-legacy is already the newest version (3.5.3-1). libperl5.40 is already the newest version (5.40.1-6). libperl5.40 set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libdivsufsort3 is already the newest version (2.0.1-6+b1). libdivsufsort3 set to manually installed. xz-utils is already the newest version (5.8.1-1.1). xz-utils set to manually installed. base-passwd is already the newest version (3.6.7). g++-15 is already the newest version (15.2.0-4). g++-15 set to manually installed. libaudit1 is already the newest version (1:4.1.2-1). libreadline8t64 is already the newest version (8.3-3). libreadline8t64 set to manually installed. liblzma5 is already the newest version (5.8.1-1.1). libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. binutils-arm-linux-gnueabihf is already the newest version (2.45-7). binutils-arm-linux-gnueabihf set to manually installed. python3.13-minimal is already the newest version (3.13.7-1). python3.13-minimal set to manually installed. libsframe2 is already the newest version (2.45-7). libsframe2 set to manually installed. libpam0g is already the newest version (1.7.0-5). gcc-15-arm-linux-gnueabihf is already the newest version (15.2.0-4). gcc-15-arm-linux-gnueabihf set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libuuid1 is already the newest version (2.41.2-2). build-essential is already the newest version (12.12). build-essential set to manually installed. linux-libc-dev is already the newest version (6.16.9-1). linux-libc-dev set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. binutils-common is already the newest version (2.45-7). binutils-common set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. python3 is already the newest version (3.13.7-1). python3 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). gcc-15-base is already the newest version (15.2.0-4). libtool is already the newest version (2.5.4-5). libtool set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). ncurses-base is already the newest version (6.5+20250216-2). gcc is already the newest version (4:15.2.0-4). gcc set to manually installed. libattr1 is already the newest version (1:2.5.2-3). libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). libgcc-15-dev is already the newest version (15.2.0-4). libgcc-15-dev set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). gcc-arm-linux-gnueabihf is already the newest version (4:15.2.0-4). gcc-arm-linux-gnueabihf set to manually installed. libudev1 is already the newest version (258-1). gettext is already the newest version (0.23.1-2+b1). gettext set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-4). libstdc++-15-dev set to manually installed. libsystemd0 is already the newest version (258-1). sed is already the newest version (4.9-2). libxml2-16 is already the newest version (2.14.5+dfsg-0.2). libxml2-16 set to manually installed. dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. libpython3.13-stdlib is already the newest version (3.13.7-1). libpython3.13-stdlib set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. python3.13 is already the newest version (3.13.7-1). python3.13 set to manually installed. debianutils is already the newest version (5.23.2). libcap2 is already the newest version (1:2.75-10+b1). sysvinit-utils is already the newest version (3.14-4). libpython3.13-minimal is already the newest version (3.13.7-1). libpython3.13-minimal set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libpam-runtime is already the newest version (1.7.0-5). libc-bin is already the newest version (2.41-12). libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. binutils is already the newest version (2.45-7). binutils set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. libsmartcols1 is already the newest version (2.41.2-2). debconf is already the newest version (1.5.91). gcc-15 is already the newest version (15.2.0-4). gcc-15 set to manually installed. tzdata is already the newest version (2025b-5). tzdata set to manually installed. libpcre2-8-0 is already the newest version (10.46-1). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libcc1-0 is already the newest version (15.2.0-4). libcc1-0 set to manually installed. coreutils is already the newest version (9.7-3). libc6 is already the newest version (2.41-12). libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. init-system-helpers is already the newest version (1.69). bsdextrautils is already the newest version (2.41.2-2). bsdextrautils set to manually installed. cpp-15-arm-linux-gnueabihf is already the newest version (15.2.0-4). cpp-15-arm-linux-gnueabihf set to manually installed. mawk is already the newest version (1.3.4.20250131-1). python3-minimal is already the newest version (3.13.7-1). python3-minimal set to manually installed. automake is already the newest version (1:1.17-4). automake set to manually installed. g++ is already the newest version (4:15.2.0-4). g++ set to manually installed. make is already the newest version (4.4.1-2). make set to manually installed. util-linux is already the newest version (2.41.2-2). tar is already the newest version (1.35+dfsg-3.1). readline-common is already the newest version (8.3-3). readline-common set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. libatomic1 is already the newest version (15.2.0-4). libatomic1 set to manually installed. libctf0 is already the newest version (2.45-7). libctf0 set to manually installed. libstdc++6 is already the newest version (15.2.0-4). libstdc++6 set to manually installed. grep is already the newest version (3.12-1). libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. dwz is already the newest version (0.16-2). dwz set to manually installed. libasan8 is already the newest version (15.2.0-4). libasan8 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libmpfr6 is already the newest version (4.2.2-2). libmpfr6 set to manually installed. libffi8 is already the newest version (3.5.2-2). libffi8 set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). libubsan1 is already the newest version (15.2.0-4). libubsan1 set to manually installed. cpp-15 is already the newest version (15.2.0-4). cpp-15 set to manually installed. libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-1.1). libmd0 is already the newest version (1.1.0-2+b1). perl is already the newest version (5.40.1-6). perl set to manually installed. debhelper is already the newest version (13.28). debhelper set to manually installed. libdivsufsort-dev is already the newest version (2.0.1-6+b1). libdivsufsort-dev set to manually installed. bash is already the newest version (5.3-1). zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). perl-modules-5.40 is already the newest version (5.40.1-6). perl-modules-5.40 set to manually installed. findutils is already the newest version (4.10.0-3). cpp-arm-linux-gnueabihf is already the newest version (4:15.2.0-4). cpp-arm-linux-gnueabihf set to manually installed. dash is already the newest version (0.5.12-12). autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. g++-arm-linux-gnueabihf is already the newest version (4:15.2.0-4). g++-arm-linux-gnueabihf set to manually installed. libelf1t64 is already the newest version (0.193-3). libelf1t64 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-8). libsqlite3-0 set to manually installed. gzip is already the newest version (1.13-1). file is already the newest version (1:5.46-5). file set to manually installed. dpkg is already the newest version (1.22.21). autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libpam-modules is already the newest version (1.7.0-5). libblkid1 is already the newest version (2.41.2-2). libmount1 is already the newest version (2.41.2-2). m4 is already the newest version (1.4.20-1). m4 set to manually installed. libbinutils is already the newest version (2.45-7). libbinutils set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libpython3-stdlib is already the newest version (3.13.7-1). libpython3-stdlib set to manually installed. base-files is already the newest version (14). libssl3t64 is already the newest version (3.5.3-1). media-types is already the newest version (13.0.0). media-types set to manually installed. diffutils is already the newest version (1:3.10-4). groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. libdebhelper-perl is already the newest version (13.28). libdebhelper-perl set to manually installed. libdebconfclient0 is already the newest version (0.280). hostname is already the newest version (3.25). sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libctf-nobfd0 is already the newest version (2.45-7). libctf-nobfd0 set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. libgomp1 is already the newest version (15.2.0-4). libgomp1 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq (Reading database ... 14555 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.7M2Lt6Baoq... I: success in 37.5039 seconds Downloading dependency 135 of 152: libblkid1:armhf=2.41.2-2 Downloading dependency 136 of 152: libmount1:armhf=2.41.2-2 Downloading dependency 137 of 152: m4:armhf=1.4.20-1 Downloading dependency 138 of 152: libbinutils:armhf=2.45-7 Downloading dependency 139 of 152: libbz2-1.0:armhf=1.0.8-6 Downloading dependency 140 of 152: libpython3-stdlib:armhf=3.13.7-1 Downloading dependency 141 of 152: base-files:armhf=14 Downloading dependency 142 of 152: libssl3t64:armhf=3.5.3-1 Downloading dependency 143 of 152: media-types:armhf=13.0.0 Downloading dependency 144 of 152: diffutils:armhf=1:3.10-4 Downloading dependency 145 of 152: groff-base:armhf=1.23.0-9 Downloading dependency 146 of 152: libdebhelper-perl:armhf=13.28 Downloading dependency 147 of 152: libdebconfclient0:armhf=0.280 Downloading dependency 148 of 152: hostname:armhf=3.25 Downloading dependency 149 of 152: sensible-utils:armhf=0.0.26 Downloading dependency 150 of 152: libctf-nobfd0:armhf=2.45-7 Downloading dependency 151 of 152: libunistring5:armhf=1.3-2 Downloading dependency 152 of 152: libgomp1:armhf=15.2.0-4 env --chdir=/srv/rebuilderd/tmp/rebuilderdejE8Ia/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1759149900 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildQ9eFMQ/debrebuild.sbuildrc.SK16HaNeARu2 sbuild --build=armhf --host=armhf --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildQ9eFMQ/debrebuild.tar.40K3Z0Uyjp9s --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=hmmer-3.4+dfsg /srv/rebuilderd/tmp/rebuilderdejE8Ia/inputs/hmmer_3.4+dfsg-3.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on codethink01-arm64 +==============================================================================+ | hmmer 3.4+dfsg-3 (armhf) Fri, 24 Oct 2025 01:36:48 +0000 | +==============================================================================+ Package: hmmer Version: 3.4+dfsg-3 Source Version: 3.4+dfsg-3 Distribution: unstable Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildQ9eFMQ/debrebuild.tar.40K3Z0Uyjp9s to /srv/rebuilderd/tmp/tmp.sbuild.81pijzTbBr... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 24 Oct 2025 01:36:56 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdejE8Ia/inputs/hmmer_3.4+dfsg-3.dsc exists in /srv/rebuilderd/tmp/rebuilderdejE8Ia/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 24 Oct 2025 01:36:58 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential Filtered Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-bFbaiQ/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 24 Oct 2025 01:37:04 +0000 | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment Fri, 24 Oct 2025 01:37:05 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) arm64 (aarch64) Toolchain package versions: binutils_2.45-7 dpkg-dev_1.22.21 g++-15_15.2.0-4 gcc-15_15.2.0-4 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-4 libstdc++6_15.2.0-4 linux-libc-dev_6.16.9-1 Package versions: autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-7 binutils-arm-linux-gnueabihf_2.45-7 binutils-common_2.45-7 bsdextrautils_2.41.2-2 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-4 cpp-15-arm-linux-gnueabihf_15.2.0-4 cpp-arm-linux-gnueabihf_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.10-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-4 g++-15-arm-linux-gnueabihf_15.2.0-4 g++-arm-linux-gnueabihf_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-4 gcc-15-arm-linux-gnueabihf_15.2.0-4 gcc-15-base_15.2.0-4 gcc-arm-linux-gnueabihf_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_15.2.0-4 libatomic1_15.2.0-4 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-7 libblkid1_2.41.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-4 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-7 libctf0_2.45-7 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdivsufsort-dev_2.0.1-6+b1 libdivsufsort3_2.0.1-6+b1 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libexpat1_2.7.3-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-4 libgcc-s1_15.2.0-4 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp10_2:6.3.0+dfsg-5 libgomp1_15.2.0-4 libisl23_0.27-1 libjansson4_2.14-2+b3 liblzma5_5.8.1-1.1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-2 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20250216-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libpython3-stdlib_3.13.7-1 libpython3.13-minimal_3.13.7-1 libpython3.13-stdlib_3.13.7-1 libreadline8t64_8.3-3 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsframe2_2.45-7 libsmartcols1_2.41.2-2 libsqlite3-0_3.46.1-8 libssl3t64_3.5.3-1 libstdc++-15-dev_15.2.0-4 libstdc++6_15.2.0-4 libsystemd0_258-1 libtinfo6_6.5+20250216-2 libtool_2.5.4-5 libubsan1_15.2.0-4 libuchardet0_0.0.8-2 libudev1_258-1 libunistring5_1.3-2 libuuid1_2.41.2-2 libxml2-16_2.14.5+dfsg-0.2 libzstd1_1.5.7+dfsg-1.1 linux-libc-dev_6.16.9-1 m4_1.4.20-1 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_13.0.0 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl-provider-legacy_3.5.3-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 po-debconf_1.0.21+nmu1 python3_3.13.7-1 python3-minimal_3.13.7-1 python3.13_3.13.7-1 python3.13-minimal_3.13.7-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.26 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-2 xz-utils_5.8.1-1.1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Fri, 24 Oct 2025 01:37:05 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hmmer Binary: hmmer, hmmer-doc, hmmer-examples Architecture: any all Version: 3.4+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://hmmer.org/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/hmmer Vcs-Git: https://salsa.debian.org/med-team/hmmer.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3 Package-List: hmmer deb science optional arch=any-amd64,any-i386,arm64,powerpc,ppc64,x32 hmmer-doc deb doc optional arch=all hmmer-examples deb doc optional arch=any Checksums-Sha1: 69590adb499ca8e4eea9d2ed10fb66ae42e82ea8 13297988 hmmer_3.4+dfsg.orig.tar.xz 1996bb01d664abff34eac52b5b57ef7e11d4a714 12996 hmmer_3.4+dfsg-3.debian.tar.xz Checksums-Sha256: 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 13297988 hmmer_3.4+dfsg.orig.tar.xz 3864769123ce5f52fca65a9fad242e1930dc813e28baca4d09075d143379deda 12996 hmmer_3.4+dfsg-3.debian.tar.xz Files: ac66418b48c613d96d43770f971a22d3 13297988 hmmer_3.4+dfsg.orig.tar.xz 1381e0ec563f438fa48b147b0c6b4335 12996 hmmer_3.4+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmjagNoACgkQQc5/C58b izIqwgf/aS9ZDyRa/dCnDzVTVu9pBa/OLznAAYdanFAIiePSuVO4ACAU6JjWB14d i/1ZByuuPl86dhdeqzR4NHbMJxaJH60KPXVZhKa2I5mrYlwD6upcD3HEwkGr/SyP xBdiTlxGIxoKiO3Ct8Hbz0b9T25uyfU45OOA6kVFpjg1wxiUUzxBjh5RKJFr6ZUR hBv/ctEvkE9D456Tu3o/LcyKmM4rQIhmY+UiBx5Srs/FSNYmPIq5nJCN/lTbUlIh KfWLtCB+dWHD5VERgyuQJN3m99VWW4BPZPvp1KTjBvS4SenF/bEzj83jvamAJqZs kTy9bmptwA1V+g2W8REqTnDzbmw6iQ== =qf5Q -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./hmmer_3.4+dfsg-3.dsc: unsupported subcommand dpkg-source: info: extracting hmmer in /build/reproducible-path/hmmer-3.4+dfsg dpkg-source: info: unpacking hmmer_3.4+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer_3.4+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_extension.patch dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying verbose-easel dpkg-source: info: applying skip_threads_check dpkg-source: info: applying sub_make_parallel dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1759149900 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.4+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? rm -f config.log config.status configure find . -name Makefile -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' AUTOHEADER=true dh_autoreconf make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' CPPFLAGS="-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" dh_auto_configure -- --enable-threads ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads configure: Configuring HMMER3 for your system. checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for egrep -e... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our NEON code... yes, armv7 flavor, with -mfpu=neon checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... no checking whether gcc can compile our NEON code... yes, armv7 flavor, with -mfpu=neon configure: Activating ARM Neon vector DP implementation checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for netinet/in.h... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for arm_neon.h... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking whether C compiler accepts -mlittle-endian... yes checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for declarations of fseeko and ftello... yes checking for -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 option for large files... none needed configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_neon/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_neon to src/impl HMMER configuration: compiler: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -mfpu=neon -mlittle-endian -pthread host: arm-unknown-linux-gnueabihf linker: -Wl,-z,relro -Wl,-z,now -flto libraries: -lpthread DP implementation: neon Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_build -a make -j4 make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel all make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c easel.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_alloc.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_alphabet.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_arr2.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_arr3.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_bitfield.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_buffer.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_cluster.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_composition.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_cpu.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_dirichlet.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_distance.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_dmatrix.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_dsqdata.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_exponential.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_fileparser.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_gamma.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_gencode.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_getopts.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_gev.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_graph.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_gumbel.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_heap.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_histogram.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_hmm.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_huffman.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_hyperexp.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_iset.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_json.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_keyhash.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_lognormal.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_matrixops.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_mem.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_minimizer.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_mixdchlet.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_mixgev.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_mpi.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msa.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msacluster.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile2.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_a2m.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_afa.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_clustal.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_phylip.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_psiblast.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_selex.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msafile_stockholm.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msashuffle.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_msaweight.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_normal.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_paml.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_quicksort.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_random.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_rand64.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_randomseq.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_ratematrix.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_recorder.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_red_black.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_regexp.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_rootfinder.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_scorematrix.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sq.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sqio.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sqio_ascii.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sqio_ncbi.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_ssi.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_stack.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_stats.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_stopwatch.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_stretchexp.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_subcmd.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_threads.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_tree.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_varint.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_vectorops.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_weibull.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_workqueue.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_wuss.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_sse.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_avx.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_avx512.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -c esl_neon.c gcc -I. -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_iset.o esl_json.o esl_keyhash.o esl_lognormal.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lpthread -lm gcc -I. -I.. -I. -I./.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_filter.c gcc -I. -I.. -I. -I./.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src all make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domain.o -c p7_domain.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hit.o -c p7_hit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_ssv.o -c fm_ssv.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_neon libhmmer-impl.stamp make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o io.o -c io.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lpthread -lm make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C profmark all make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' gcc -I../easel -I../easel -I../src -I../src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -I../easel -I../easel -I../src -I../src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lpthread -lm gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lpthread -lm make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' /usr/bin/make tests -j 4 make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' /usr/bin/make -C easel tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alloc_utest -I. -I. -L. -DeslALLOC_TESTDRIVE ./esl_alloc.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_bitfield_utest -I. -I. -L. -DeslBITFIELD_TESTDRIVE ./esl_bitfield.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cpu_utest -I. -I. -L. -DeslCPU_TESTDRIVE ./esl_cpu.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_graph_utest -I. -I. -L. -DeslGRAPH_TESTDRIVE ./esl_graph.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_huffman_utest -I. -I. -L. -DeslHUFFMAN_TESTDRIVE ./esl_huffman.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_iset_utest -I. -I. -L. -DeslISET_TESTDRIVE ./esl_iset.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_json_utest -I. -I. -L. -DeslJSON_TESTDRIVE ./esl_json.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_lognormal_utest -I. -I. -L. -DeslLOGNORMAL_TESTDRIVE ./esl_lognormal.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_matrixops_utest -I. -I. -L. -DeslMATRIXOPS_TESTDRIVE ./esl_matrixops.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_minimizer_utest -I. -I. -L. -DeslMINIMIZER_TESTDRIVE ./esl_minimizer.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mixdchlet_utest -I. -I. -L. -DeslMIXDCHLET_TESTDRIVE ./esl_mixdchlet.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_quicksort_utest -I. -I. -L. -DeslQUICKSORT_TESTDRIVE ./esl_quicksort.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rand64_utest -I. -I. -L. -DeslRAND64_TESTDRIVE ./esl_rand64.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_red_black_utest -I. -I. -L. -DeslRED_BLACK_TESTDRIVE ./esl_red_black.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_varint_utest -I. -I. -L. -DeslVARINT_TESTDRIVE ./esl_varint.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx_utest -I. -I. -L. -DeslAVX_TESTDRIVE ./esl_avx.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx512_utest -I. -I. -L. -DeslAVX512_TESTDRIVE ./esl_avx512.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_neon_utest -I. -I. -L. -DeslNEON_TESTDRIVE ./esl_neon.c -leasel -lm -lpthread gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vmx_utest -I. -I. -L. -DeslVMX_TESTDRIVE ./esl_vmx.c -leasel -lm -lpthread /usr/bin/make -C miniapps tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' /usr/bin/make -C src tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' /usr/bin/make -C impl_neon libhmmer-impl.stamp gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7DOMAIN_TESTDRIVE -o p7_domain_utest ./p7_domain.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HIT_TESTDRIVE -o p7_hit_utest ./p7_hit.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATS_TESTDRIVE -o p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_neon -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATUS_TESTDRIVE -o hmmd_search_status_utest ./hmmd_search_status.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -DHAVE_CONFIG_H -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_neon -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lpthread -lm /usr/bin/make -C impl_neon tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -flto -pthread -mfpu=neon -mlittle-endian -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' /usr/bin/make check -j 4 | tee debian/test_log make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' /usr/bin/make -C easel tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' /usr/bin/make -C miniapps tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' /usr/bin/make -C src tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' /usr/bin/make -C impl_neon libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' /usr/bin/make -C impl_neon tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' /usr/bin/make -C easel check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' /usr/bin/make -C miniapps check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' /usr/bin/make -C testsuite check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ iset-utest] ... ok. exercise 26 [ json-utest] ... ok. exercise 27 [ keyhash-utest] ... ok. exercise 28 [ lognormal-utest] ... ok. exercise 29 [ matrixops-utest] ... ok. exercise 30 [ mem-utest] ... ok. exercise 31 [ minimizer-utest] ... ok. exercise 32 [ mixdchlet-utest] ... ok. exercise 33 [ msa-utest] ... ok. exercise 34 [ msacluster-utest] ... ok. exercise 35 [ msafile] ... ok. exercise 36 [ msafile2] ... ok. exercise 37 [ msafile-a2m] ... ok. exercise 38 [ msafile-afa] ... ok. exercise 39 [ msafile-clustal] ... ok. exercise 40 [ msafile-phylip] ... ok. exercise 41 [ msafile-psiblast] ... ok. exercise 42 [ msafile-selex] ... ok. exercise 43 [ msafile-stockholm] ... ok. exercise 44 [ msaweight-utest] ... ok. exercise 45 [ neon-utest] ... ok. exercise 46 [ normal-utest] ... ok. exercise 47 [ quicksort-utest] ... ok. exercise 48 [ random-utest] ... ok. exercise 49 [ rand64-utest] ... ok. exercise 50 [ randomseq-utest] ... ok. exercise 51 [ ratematrix-utest] ... ok. exercise 52 [ recorder-utest] ... ok. exercise 53 [ red_black-utest] ... ok. exercise 54 [ regexp-utest] ... ok. exercise 55 [ rootfinder-utest] ... ok. exercise 56 [ scorematrix-utest] ... ok. exercise 57 [ sq-utest] ... ok. exercise 58 [ sqio-utest] ... ok. exercise 59 [ sse-utest] ... ok. exercise 60 [ ssi-utest] ... ok. exercise 61 [ stack-utest] ... ok. exercise 62 [ stats-utest] ... ok. exercise 63 [ stretchexp-utest] ... ok. exercise 64 [ tree-utest] ... ok. exercise 65 [ varint-utest] ... ok. exercise 66 [ vectorops-utest] ... ok. exercise 67 [ vmx-utest] ... ok. exercise 68 [ weibull-utest] ... ok. exercise 69 [ wuss-utest] ... ok. exercise 70 [ e2] ... ok. exercise 71 [ degen-residues] ... ok. exercise 72 [ ncbi-indices] ... ok. exercise 73 [ blank-gf] ... ok. exercise 74 [ sindi] ... ok. exercise 75 [ esl-translate] ... ok. exercise 76 [ esl-afetch] ... ok. exercise 77 [ esl-alimanip] ... ok. exercise 78 [ esl-alimap] ... ok. exercise 79 [ esl-alimask] ... ok. exercise 80 [ esl-alimerge] ... ok. exercise 81 [ esl-alistat] ... ok. exercise 82 [ esl-compalign] ... ok. exercise 83 [ esl-construct] ... ok. exercise 84 [ esl-mask] ... ok. exercise 85 [ esl-seqrange] ... ok. exercise 86 [ esl-shuffle] ... ok. exercise 87 [ esl-ssdraw] ... ok. All 87 exercises at level <= 2 passed. System information: Fri Oct 24 01:42:02 UTC 2025 Linux sbuild 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) armv8l GNU/Linux make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' /usr/bin/make -C testsuite check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Fri Oct 24 01:42:25 UTC 2025 Linux sbuild 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) armv8l GNU/Linux make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/testsuite' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/build/reproducible-path/hmmer-3.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel all make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C miniapps all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src all make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C impl_neon libhmmer-impl.stamp make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[3]: 'libhmmer-impl.stamp' is up to date. make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_neon' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C profmark all make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin; fi if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1 ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1; fi make -C src install make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin/ ;\ done make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C documentation install make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make -C man install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/arm-linux-gnueabihf/hmmer/ cp src/hmmc2 /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/arm-linux-gnueabihf/hmmer/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a debian/rules execute_after_dh_installexamples make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \; find src/impl_sse -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \; cp src/itest_brute /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp src/hmmpress.itest.pl /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp -aR testsuite /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find easel -name "*.o" -delete cp -aR easel /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples cp -aR tutorial /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/build/reproducible-path/hmmer-3.4+dfsg^.^g" find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_compress -Xtutorial/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_fixperms -a debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' find debian -name .dropbox.attr -delete find debian -name "*.fa" -executable -exec chmod -x \{\} \; find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.4+dfsg-3_armhf.deb'. dpkg-genbuildinfo --build=any -O../hmmer_3.4+dfsg-3_armhf.buildinfo dpkg-genchanges --build=any -O../hmmer_3.4+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-10-24T01:43:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 24 Oct 2025 01:43:07 +0000 | +------------------------------------------------------------------------------+ hmmer_3.4+dfsg-3_armhf.changes: ------------------------------- Format: 1.8 Date: Mon, 29 Sep 2025 14:45:00 +0200 Source: hmmer Binary: hmmer-examples Architecture: armhf Version: 3.4+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: hmmer-examples - profile hidden Markov models for protein sequence analysis (examp Closes: 1103312 Changes: hmmer (3.4+dfsg-3) unstable; urgency=medium . * Team upload. . [ Michael R. Crusoe ] * d/rules: use DEB_BUILD_OPTION_PARALLEL instead of nproc to respect Debian Policy 4.9.1. . [ Santiago Vila ] * d/rules: Put V=VERBOSE at the beginning to be used in all targets. * d/rules: Do not filter nocheck in override_dh_auto_test, dh already does that. * d/rules: make tests after dh_auto_build, required by dh_installexamples. Fixes FTBFS when built with nocheck build profile. Closes: #1103312. * d/rules: Use execute_after_* where possible. * d/salsa-ci.yml: Use the simplified form. * d/salsa-ci.yml: Disable reprotest job, it does not work. * d/salsa-ci.yml: Enable nocheck build profile job. * d/control: Drop "Rules-Required-Root: no", no longer needed. * d/control: Update standards-version. Checksums-Sha1: f903662438f99dac15083bfc905f3a8d06a3ca52 31391796 hmmer-examples_3.4+dfsg-3_armhf.deb 4c7df0ba96372581f6efdf2a3017be1df4b2ced2 4819 hmmer_3.4+dfsg-3_armhf.buildinfo Checksums-Sha256: 7a0277f623e588467e86e036c5957ebce90d48f7f63c85b56cc09692b870ddba 31391796 hmmer-examples_3.4+dfsg-3_armhf.deb e67b17a839b331b43b85f092dfb8c0a471f3b6187746f9b71524d0c1e9255736 4819 hmmer_3.4+dfsg-3_armhf.buildinfo Files: fd02b3b0cb1f5fb172cda092085f9e0c 31391796 doc optional hmmer-examples_3.4+dfsg-3_armhf.deb cb053f641c8f6c50157d483565fa40ce 4819 science optional hmmer_3.4+dfsg-3_armhf.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Fri, 24 Oct 2025 01:43:07 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer Binary: hmmer-examples Architecture: armhf Version: 3.4+dfsg-3 Checksums-Md5: fd02b3b0cb1f5fb172cda092085f9e0c 31391796 hmmer-examples_3.4+dfsg-3_armhf.deb Checksums-Sha1: f903662438f99dac15083bfc905f3a8d06a3ca52 31391796 hmmer-examples_3.4+dfsg-3_armhf.deb Checksums-Sha256: 7a0277f623e588467e86e036c5957ebce90d48f7f63c85b56cc09692b870ddba 31391796 hmmer-examples_3.4+dfsg-3_armhf.deb Build-Origin: Debian Build-Architecture: armhf Build-Date: Fri, 24 Oct 2025 01:43:05 +0000 Build-Path: /build/reproducible-path/hmmer-3.4+dfsg Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.3-1), binutils (= 2.45-7), binutils-arm-linux-gnueabihf (= 2.45-7), binutils-common (= 2.45-7), bsdextrautils (= 2.41.2-2), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-4), cpp-15-arm-linux-gnueabihf (= 15.2.0-4), cpp-arm-linux-gnueabihf (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 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1.0.21+nmu1), python3 (= 3.13.7-1), python3-minimal (= 3.13.7-1), python3.13 (= 3.13.7-1), python3.13-minimal (= 3.13.7-1), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-5), util-linux (= 2.41.2-2), xz-utils (= 5.8.1-1.1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1759149900" +------------------------------------------------------------------------------+ | Package contents Fri, 24 Oct 2025 01:43:08 +0000 | +------------------------------------------------------------------------------+ hmmer-examples_3.4+dfsg-3_armhf.deb ----------------------------------- new Debian package, version 2.0. size 31391796 bytes: control archive=18132 bytes. 864 bytes, 22 lines control 68181 bytes, 741 lines md5sums Package: hmmer-examples Source: hmmer Version: 3.4+dfsg-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 32382 Depends: libperl4-corelibs-perl Section: doc Priority: optional Multi-Arch: foreign Homepage: http://hmmer.org/ Description: profile hidden Markov models for protein sequence analysis (examples) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains example files to test the hmmer package. drwxr-xr-x root/root 0 2025-09-29 12:45 ./ drwxr-xr-x root/root 0 2025-09-29 12:45 ./usr/ drwxr-xr-x root/root 0 2025-09-29 12:45 ./usr/share/ drwxr-xr-x root/root 0 2025-09-29 12:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-09-29 12:45 ./usr/share/doc/hmmer-examples/ -rw-r--r-- root/root 1535 2025-09-29 12:45 ./usr/share/doc/hmmer-examples/changelog.Debian.gz -rw-r--r-- root/root 5159 2025-09-29 12:45 ./usr/share/doc/hmmer-examples/copyright drwxr-xr-x root/root 0 2025-09-29 12:45 ./usr/share/doc/hmmer/ drwxr-xr-x root/root 0 2025-09-29 12:45 ./usr/share/doc/hmmer/examples/ drwxr-xr-x root/root 0 2025-09-29 12:45 ./usr/share/doc/hmmer/examples/easel/ -rw-r--r-- root/root 117 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/.travis.yml -rw-r--r-- root/root 3642 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/LICENSE -rw-r--r-- root/root 4689 2025-09-29 12:45 ./usr/share/doc/hmmer/examples/easel/Makefile.gz -rw-r--r-- root/root 4427 2025-09-29 12:45 ./usr/share/doc/hmmer/examples/easel/Makefile.in.gz -rw-r--r-- root/root 1697 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/README.md -rw-r--r-- root/root 14946 2025-09-29 12:45 ./usr/share/doc/hmmer/examples/easel/config.guess.gz -rw-r--r-- root/root 11857 2025-09-29 12:45 ./usr/share/doc/hmmer/examples/easel/config.sub.gz -rw-r--r-- root/root 7049 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/configure.ac.gz -rw-r--r-- root/root 571 2025-09-29 12:45 ./usr/share/doc/hmmer/examples/easel/decoy_config.h -rw-r--r-- root/root 494 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/decoy_config.h.in drwxr-xr-x root/root 0 2025-09-29 12:45 ./usr/share/doc/hmmer/examples/easel/demotic/ -rw-r--r-- root/root 1434 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/00README.gz -rwxr-xr-x root/root 126 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/blast2profmark -rwxr-xr-x root/root 121 2023-08-13 08:10 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./usr/share/doc/hmmer/examples/tutorial/globins45.fa +------------------------------------------------------------------------------+ | Post Build Fri, 24 Oct 2025 01:43:10 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 24 Oct 2025 01:43:10 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 24 Oct 2025 01:43:11 +0000 | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 323528 Build-Time: 358 Distribution: unstable Host Architecture: armhf Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdejE8Ia/inputs/hmmer_3.4+dfsg-3.dsc Machine Architecture: arm64 Package: hmmer Package-Time: 378 Source-Version: 3.4+dfsg-3 Space: 323528 Status: successful Version: 3.4+dfsg-3 -------------------------------------------------------------------------------- Finished at 2025-10-24T01:43:06Z Build needed 00:06:18, 323528k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdejE8Ia/out size differs for hmmer-examples_3.4+dfsg-3_armhf.deb checking hmmer-examples_3.4+dfsg-3_armhf.deb: