=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdmyJOJf/inputs/python-pysam_0.23.3+ds-2_armhf.buildinfo Source: python-pysam Version: 0.23.3+ds-2 rebuilderd-worker node: codethink01-arm64 +------------------------------------------------------------------------------+ | Downloading sources Fri, 28 Nov 2025 16:28:19 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.5 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [148 kB] Get:7 https://deb.debian.org/debian sid InRelease [176 kB] Get:8 https://deb.debian.org/debian experimental InRelease [82.8 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6548 B] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [95.1 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [35.8 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [1032 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [103 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7408 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:19 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [9684 B] Get:21 https://deb.debian.org/debian experimental/main Sources [365 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [3052 B] Fetched 33.8 MB in 31s (1083 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds-2.dsc' python-pysam_0.23.3+ds-2.dsc 2563 SHA256:f3b0fd2ac35e45fe9feeaf0042539d3d2c35f7ffe158774692f641828b9e4947 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds.orig.tar.xz' python-pysam_0.23.3+ds.orig.tar.xz 1504032 SHA256:2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds-2.debian.tar.xz' python-pysam_0.23.3+ds-2.debian.tar.xz 10808 SHA256:27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 python-pysam_0.23.3+ds.orig.tar.xz 27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 python-pysam_0.23.3+ds-2.debian.tar.xz f3b0fd2ac35e45fe9feeaf0042539d3d2c35f7ffe158774692f641828b9e4947 python-pysam_0.23.3+ds-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 28 Nov 2025 16:28:51 +0000 | +------------------------------------------------------------------------------+ Rebuilding python-pysam=0.23.3+ds-2 in /srv/rebuilderd/tmp/rebuilderdmyJOJf/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdmyJOJf/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdmyJOJf/inputs/python-pysam_0.23.3+ds-2_armhf.buildinfo /srv/rebuilderd/tmp/rebuilderdmyJOJf/inputs/python-pysam_0.23.3+ds-2_armhf.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/python-pysam-0.23.3+ds I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [176 kB] Get:2 http://snapshot.debian.org/archive/debian/20251114T142839Z sid InRelease [176 kB] Get:3 http://deb.debian.org/debian unstable/main armhf Packages [9708 kB] Get:4 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf Packages [9696 kB] Fetched 19.8 MB in 2s (10.8 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20251114T142839Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.41.2-4 [90.5 kB] Fetched 90.5 kB in 0s (5857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu16h3rb6/bsdextrautils_2.41.2-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy0thbpfh/dh-autoreconf_21_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3.13 armhf 3.13.9-1 [764 kB] Fetched 764 kB in 0s (33.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpllrmqhgk/python3.13_3.13.9-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.20-2 [304 kB] Fetched 304 kB in 0s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprv9r6hp2/m4_1.4.20-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libp11-kit0 armhf 0.25.9-2 [409 kB] Fetched 409 kB in 0s (20.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpje68rsaz/libp11-kit0_0.25.9-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf autopoint all 0.23.2-1 [772 kB] Fetched 772 kB in 0s (37.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5f1cd_o/autopoint_0.23.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf diffutils armhf 1:3.12-1 [392 kB] Fetched 392 kB in 0s (19.6 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpjr9_ezul/diffutils_3.12-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libkrb5-dev armhf 1.21.3-5 [16.1 kB] Fetched 16.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpry16pr3b/libkrb5-dev_1.21.3-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.4-1 [37.1 kB] Fetched 37.1 kB in 0s (2317 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphbad2clx/python3-typeguard_4.4.4-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (741 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_jvrh__5/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libldap-dev armhf 2.6.10+dfsg-1 [286 kB] Fetched 286 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3kwej7iz/libldap-dev_2.6.10+dfsg-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf openssl-provider-legacy armhf 3.5.4-1 [301 kB] Fetched 301 kB in 0s (19.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoym4n7ie/openssl-provider-legacy_3.5.4-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libgmp10 armhf 2:6.3.0+dfsg-5 [513 kB] Fetched 513 kB in 0s (22.7 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5_armhf.deb' to '/srv/rebuilderd/tmp/tmp7hygdp26/libgmp10_6.3.0+dfsg-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libidn2-0 armhf 2.3.8-4 [106 kB] Fetched 106 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnt5valj8/libidn2-0_2.3.8-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.13.7-1 [27.2 kB] Fetched 27.2 kB in 0s (1757 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgp_pss3x/python3-minimal_3.13.7-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (1938 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv8_6mnr8/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libseccomp2 armhf 2.6.0-2 [49.3 kB] Fetched 49.3 kB in 0s (3277 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzkb74wpx/libseccomp2_2.6.0-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-10 [607 kB] Fetched 607 kB in 0s (28.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxz1yp6b/libdb5.3t64_5.3.28+dfsg2-10_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (2975 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubpyi0ta/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libncursesw6 armhf 6.5+20250216-2 [110 kB] Fetched 110 kB in 0s (7221 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvbrxp2qz/libncursesw6_6.5+20250216-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libselinux1 armhf 3.9-2 [77.3 kB] Fetched 77.3 kB in 0s (5312 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqq3lgrpe/libselinux1_3.9-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.23.2-1 [1567 kB] Fetched 1567 kB in 0s (83.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppq353ed_/gettext_0.23.2-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf bash armhf 5.3-1 [1485 kB] Fetched 1485 kB in 0s (54.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqxvgixi3/bash_5.3-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libssl-dev armhf 3.5.4-1 [2586 kB] Fetched 2586 kB in 0s (56.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp352a3gku/libssl-dev_3.5.4-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf cython3 armhf 3.1.6+dfsg-2 [2199 kB] Fetched 2199 kB in 0s (119 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp999rai9v/cython3_3.1.6+dfsg-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzu2exa9/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf gcc-15-base armhf 15.2.0-8 [53.5 kB] Fetched 53.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk2dmtsnh/gcc-15-base_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.13.7-1 [10.5 kB] Fetched 10.5 kB in 0s (715 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvjry2eji/libpython3-dev_3.13.7-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf gzip armhf 1.13-1 [134 kB] Fetched 134 kB in 0s (7744 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmwx3rk95/gzip_1.13-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libblkid1 armhf 2.41.2-4 [158 kB] Fetched 158 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95y5ybc_/libblkid1_2.41.2-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libzstd1 armhf 1.5.7+dfsg-2 [269 kB] Fetched 269 kB in 0s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3jrddg0/libzstd1_1.5.7+dfsg-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (767 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpei2x176y/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.6.0-1 [27.1 kB] Fetched 27.1 kB in 0s (1631 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfjoq5dte/python3-pluggy_1.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libp11-kit-dev armhf 0.25.9-2 [220 kB] Fetched 220 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv8p9tmgr/libp11-kit-dev_0.25.9-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf cpp-15 armhf 15.2.0-8 [1280 B] Fetched 1280 B in 0s (107 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpworufrz9/cpp-15_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.23.2-1 [240 kB] Fetched 240 kB in 0s (15.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa6v66dzv/gettext-base_0.23.2-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgnutls-dane0t64 armhf 3.8.10-3 [450 kB] Fetched 450 kB in 0s (27.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpynxp3t8l/libgnutls-dane0t64_3.8.10-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libisl23 armhf 0.27-1 [517 kB] Fetched 517 kB in 0s (31.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq6771r7c/libisl23_0.27-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Fetched 905 kB in 0s (51.7 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb' to '/srv/rebuilderd/tmp/tmpfsvhifz3/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.46-5 [42.8 kB] Fetched 42.8 kB in 0s (2470 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_armhf.deb' to '/srv/rebuilderd/tmp/tmpg86hbngl/file_5.46-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf gcc armhf 4:15.2.0-4 [5152 B] Fetched 5152 B in 0s (278 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpoaffdot_/gcc_15.2.0-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf samtools armhf 1.22.1-1 [660 kB] Fetched 660 kB in 0s (30.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjip53scp/samtools_1.22.1-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.13.7-1 [1068 B] Fetched 1068 B in 0s (65.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjf8t_j26/python3-all-dev_3.13.7-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libjansson4 armhf 2.14-2+b3 [35.5 kB] Fetched 35.5 kB in 0s (2159 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbg02o5o/libjansson4_2.14-2+b3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libhts3t64 armhf 1.22.1+ds2-1 [416 kB] Fetched 416 kB in 0s (26.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ppv9r26/libhts3t64_1.22.1+ds2-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (2681 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6j8n6lte/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (6109 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppuwfmkx0/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libngtcp2-dev armhf 1.16.0-1 [187 kB] Fetched 187 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ic5ttx6/libngtcp2-dev_1.16.0-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Fetched 55.8 kB in 0s (5357 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6unn17px/libpsl5t64_0.21.2-1.1+b1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (1158 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2a6aubcm/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Fetched 164 kB in 0s (11.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4edtc702/libevent-2.1-7t64_2.1.12-stable-10+b1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libidn2-dev armhf 2.3.8-4 [98.6 kB] Fetched 98.6 kB in 0s (6518 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeqnlifr3/libidn2-dev_2.3.8-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libmpc3 armhf 1.3.1-2 [43.8 kB] Fetched 43.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe71moug5/libmpc3_1.3.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libcurl4-gnutls-dev armhf 8.17.0-2 [478 kB] Fetched 478 kB in 0s (23.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3j3zcmqd/libcurl4-gnutls-dev_8.17.0-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf tzdata all 2025b-5 [260 kB] Fetched 260 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeh1tvfwb/tzdata_2025b-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.23-2 [36.5 kB] Fetched 36.5 kB in 0s (2675 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6qb0as0p/libdeflate0_1.23-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Fetched 29.2 kB in 0s (1915 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmwmn7x9g/pkgconf-bin_1.8.1-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libkadm5clnt-mit12 armhf 1.21.3-5 [37.7 kB] Fetched 37.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp60pjl4jl/libkadm5clnt-mit12_1.21.3-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libatomic1 armhf 15.2.0-8 [7128 B] Fetched 7128 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57bj4x25/libatomic1_15.2.0-8_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgomp1 armhf 15.2.0-8 [115 kB] Fetched 115 kB in 0s (7470 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_6w2ybti/libgomp1_15.2.0-8_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgcc-15-dev armhf 15.2.0-8 [767 kB] Fetched 767 kB in 0s (42.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp302d66ux/libgcc-15-dev_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (56.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpczfeffog/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libudev1 armhf 258.1-2 [147 kB] Fetched 147 kB in 0s (5932 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87b2vebq/libudev1_258.1-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (1577 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpig2cky5m/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.46-5 [100 kB] Fetched 100 kB in 0s (5420 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_armhf.deb' to '/srv/rebuilderd/tmp/tmpwet4s2i0/libmagic1t64_5.46-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf5b6xllb/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3.13-dev armhf 3.13.9-1 [504 kB] Fetched 504 kB in 0s (24.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9s7ed04/python3.13-dev_3.13.9-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.194-1 [180 kB] Fetched 180 kB in 0s (7130 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppqf4s0be/libelf1t64_0.194-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (37.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ct4dh0a/libdpkg-perl_1.22.21_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf comerr-dev armhf 2.1-1.47.2-3+b3 [56.2 kB] Fetched 56.2 kB in 0s (3281 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpevw0t0a9/comerr-dev_2.1-1.47.2-3+b3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.7+dfsg-2 [337 kB] Fetched 337 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq12qgtsq/libzstd-dev_1.5.7+dfsg-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (745 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfm7sm8v5/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf findutils armhf 4.10.0-3 [687 kB] Fetched 687 kB in 0s (44.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1fkuy25o/findutils_4.10.0-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf build-essential armhf 12.12 [4624 B] Fetched 4624 B in 0s (293 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdar9r4g0/build-essential_12.12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf sysvinit-utils armhf 3.15-5 [33.6 kB] Fetched 33.6 kB in 0s (2023 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_86efzz2/sysvinit-utils_3.15-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (590 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmped2w556i/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libhts-dev armhf 1.22.1+ds2-1 [1682 kB] Fetched 1682 kB in 0s (82.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9uagr_7l/libhts-dev_1.22.1+ds2-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf nettle-dev armhf 3.10.2-1 [1316 kB] Fetched 1316 kB in 0s (47.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpftfrvbxr/nettle-dev_3.10.2-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (4720 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_glh_veu/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf g++ armhf 4:15.2.0-4 [1328 B] Fetched 1328 B in 0s (85.6 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpugppxw17/g++_15.2.0-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libcrypt1 armhf 1:4.5.1-1 [102 kB] Fetched 102 kB in 0s (7083 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpt4phdlcm/libcrypt1_4.5.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf automake all 1:1.18.1-2 [877 kB] Fetched 877 kB in 0s (49.4 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-2_all.deb' to '/srv/rebuilderd/tmp/tmprn0zsaz5/automake_1.18.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-5 [328 kB] Fetched 328 kB in 0s (20.1 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5_armhf.deb' to '/srv/rebuilderd/tmp/tmpa88suu78/libgmpxx4ldbl_6.3.0+dfsg-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpam-modules armhf 1.7.0-5 [164 kB] Fetched 164 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp81nhbn1i/libpam-modules_1.7.0-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf patch armhf 2.8-2 [128 kB] Fetched 128 kB in 0s (8589 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf5q77a9r/patch_2.8-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Fetched 35.0 kB in 0s (2164 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprjz28yq0/libpipeline1_1.5.8-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf readline-common all 8.3-3 [74.8 kB] Fetched 74.8 kB in 0s (6030 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3il9z0dp/readline-common_8.3-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3.13-minimal armhf 3.13.9-1 [1884 kB] Fetched 1884 kB in 0s (81.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptoq_631c/python3.13-minimal_3.13.9-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20250414 [116 kB] Fetched 116 kB in 0s (7862 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5tk5hfga/dh-python_6.20250414_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpam0g armhf 1.7.0-5 [64.5 kB] Fetched 64.5 kB in 0s (4299 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13klywlo/libpam0g_1.7.0-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8sp2y2zg/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Fetched 378 kB in 0s (31.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbu1yyvwf/libssh2-1-dev_1.11.1-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf dpkg armhf 1.22.21 [1488 kB] Fetched 1488 kB in 0s (51.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzl2uxt9/dpkg_1.22.21_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libunbound8 armhf 1.24.1-2 [554 kB] Fetched 554 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphmrm9gtg/libunbound8_1.24.1-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-2 [441 kB] Fetched 441 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe5gw3003/libunistring5_1.3-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf bzip2 armhf 1.0.8-6 [39.4 kB] Fetched 39.4 kB in 0s (2538 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8rs_vghl/bzip2_1.0.8-6_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (733 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeei6xohn/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf perl armhf 5.40.1-6 [267 kB] Fetched 267 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprhjyqtum/perl_5.40.1-6_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.8.1-2 [336 kB] Fetched 336 kB in 0s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdr0_66wp/liblzma-dev_5.8.1-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf bcftools armhf 1.22-1 [730 kB] Fetched 730 kB in 0s (40.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmkxgl_ch/bcftools_1.22-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libhogweed6t64 armhf 3.10.2-1 [323 kB] Fetched 323 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3zaa1gre/libhogweed6t64_3.10.2-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpython3.13 armhf 3.13.9-1 [1911 kB] Fetched 1911 kB in 0s (90.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaz049k7o/libpython3.13_3.13.9-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.46-5 [338 kB] Fetched 338 kB in 0s (21.0 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_armhf.deb' to '/srv/rebuilderd/tmp/tmpapejvhnp/libmagic-mgc_5.46-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libtasn1-6 armhf 4.20.0-2 [44.4 kB] Fetched 44.4 kB in 0s (2444 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptek3orq8/libtasn1-6_4.20.0-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf debhelper all 13.28 [941 kB] Fetched 941 kB in 0s (38.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkgkv7dy6/debhelper_13.28_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf g++-arm-linux-gnueabihf armhf 4:15.2.0-4 [1200 B] Fetched 1200 B in 0s (58.5 kB/s) dpkg-name: info: moved 'g++-arm-linux-gnueabihf_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpxxeogp3v/g++-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-packaging all 25.0-1 [56.6 kB] Fetched 56.6 kB in 0s (3092 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzgcsbwzh/python3-packaging_25.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf rpcsvc-proto armhf 1.4.3-1 [58.7 kB] Fetched 58.7 kB in 0s (3378 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp172n50sy/rpcsvc-proto_1.4.3-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libgdbm6t64 armhf 1.26-1 [74.4 kB] Fetched 74.4 kB in 0s (4322 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwpeqne0y/libgdbm6t64_1.26-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libk5crypto3 armhf 1.21.3-5 [76.0 kB] Fetched 76.0 kB in 0s (4467 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6btn6vmo/libk5crypto3_1.21.3-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libnghttp3-9 armhf 1.12.0-1 [59.8 kB] Fetched 59.8 kB in 0s (4061 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6b6myk4h/libnghttp3-9_1.12.0-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libbz2-1.0 armhf 1.0.8-6 [35.0 kB] Fetched 35.0 kB in 0s (2162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2vu13e4x/libbz2-1.0_1.0.8-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf linux-libc-dev all 6.17.7-2 [2535 kB] Fetched 2535 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_p310h4m/linux-libc-dev_6.17.7-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgnutls-openssl27t64 armhf 3.8.10-3 [450 kB] Fetched 450 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprslv3uo9/libgnutls-openssl27t64_3.8.10-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.13.7-1 [28.3 kB] Fetched 28.3 kB in 0s (1874 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzb9g_l9_/python3_3.13.7-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-5 [592 kB] Fetched 592 kB in 0s (28.2 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5_armhf.deb' to '/srv/rebuilderd/tmp/tmpzzzwgke7/libgmp-dev_6.3.0+dfsg-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libngtcp2-16 armhf 1.16.0-1 [131 kB] Fetched 131 kB in 0s (8216 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjtz9v_b3/libngtcp2-16_1.16.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libsystemd0 armhf 258.1-2 [431 kB] Fetched 431 kB in 0s (36.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgohscys1/libsystemd0_258.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libstdc++6 armhf 15.2.0-8 [623 kB] Fetched 623 kB in 0s (37.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaka9tu63/libstdc++6_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf xz-utils armhf 5.8.1-2 [657 kB] Fetched 657 kB in 0s (54.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1pa1be_q/xz-utils_5.8.1-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libtasn1-6-dev armhf 4.20.0-2 [93.4 kB] Fetched 93.4 kB in 0s (8251 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5s4ut4i/libtasn1-6-dev_4.20.0-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libubsan1 armhf 15.2.0-8 [1075 kB] Fetched 1075 kB in 0s (42.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfhgreljf/libubsan1_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b7 [294 kB] Fetched 294 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyxult3ib/libbrotli-dev_1.1.0-2+b7_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf base-passwd armhf 3.6.8 [53.4 kB] Fetched 53.4 kB in 0s (3016 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy_28ygr5/base-passwd_3.6.8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.16-2 [104 kB] Fetched 104 kB in 0s (6099 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptqmt1280/dwz_0.16-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libdebconfclient0 armhf 0.281 [10.4 kB] Fetched 10.4 kB in 0s (678 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoukzmcqn/libdebconfclient0_0.281_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libffi8 armhf 3.5.2-2 [20.6 kB] Fetched 20.6 kB in 0s (1254 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiodnbniu/libffi8_3.5.2-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libcurl3t64-gnutls armhf 8.17.0-2 [347 kB] Fetched 347 kB in 0s (28.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lea5qqc/libcurl3t64-gnutls_8.17.0-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf krb5-multidev armhf 1.21.3-5 [126 kB] Fetched 126 kB in 0s (6919 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf61ubx5f/krb5-multidev_1.21.3-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgssrpc4t64 armhf 1.21.3-5 [52.9 kB] Fetched 52.9 kB in 0s (3096 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4qz12sed/libgssrpc4t64_1.21.3-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libc-bin armhf 2.41-12 [523 kB] Fetched 523 kB in 0s (24.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzo9uncn1/libc-bin_2.41-12_armhf.deb' Downloading dependency 1 of 247: bsdextrautils:armhf=2.41.2-4 Downloading dependency 2 of 247: dh-autoreconf:armhf=21 Downloading dependency 3 of 247: python3.13:armhf=3.13.9-1 Downloading dependency 4 of 247: m4:armhf=1.4.20-2 Downloading dependency 5 of 247: libp11-kit0:armhf=0.25.9-2 Downloading dependency 6 of 247: autopoint:armhf=0.23.2-1 Downloading dependency 7 of 247: diffutils:armhf=1:3.12-1 Downloading dependency 8 of 247: libkrb5-dev:armhf=1.21.3-5 Downloading dependency 9 of 247: python3-typeguard:armhf=4.4.4-1 Downloading dependency 10 of 247: python3-jaraco.text:armhf=4.0.0-1 Downloading dependency 11 of 247: libldap-dev:armhf=2.6.10+dfsg-1 Downloading dependency 12 of 247: openssl-provider-legacy:armhf=3.5.4-1 Downloading dependency 13 of 247: libgmp10:armhf=2:6.3.0+dfsg-5 Downloading dependency 14 of 247: libidn2-0:armhf=2.3.8-4 Downloading dependency 15 of 247: python3-minimal:armhf=3.13.7-1 Downloading dependency 16 of 247: media-types:armhf=14.0.0 Downloading dependency 17 of 247: libseccomp2:armhf=2.6.0-2 Downloading dependency 18 of 247: libdb5.3t64:armhf=5.3.28+dfsg2-10 Downloading dependency 19 of 247: autotools-dev:armhf=20240727.1 Downloading dependency 20 of 247: libncursesw6:armhf=6.5+20250216-2 Downloading dependency 21 of 247: libselinux1:armhf=3.9-2 Downloading dependency 22 of 247: gettext:armhf=0.23.2-1 Downloading dependency 23 of 247: bash:armhf=5.3-1 Downloading dependency 24 of 247: libssl-dev:armhf=3.5.4-1 Downloading dependency 25 of 247: cython3:armhf=3.1.6+dfsg-2 Downloading dependency 26 of 247: python3-pkg-resources:armhf=78.1.1-0.1 Downloading dependency 27 of 247: gcc-15-base:armhf=15.2.0-8 Downloading dependency 28 of 247: libpython3-dev:armhf=3.13.7-1 Downloading dependency 29 of 247: gzip:armhf=1.13-1 Downloading dependency 30 of 247: libblkid1:armhf=2.41.2-4 Downloading dependency 31 of 247: libzstd1:armhf=1.5.7+dfsg-2 Downloading dependency 32 of 247: netbase:armhf=6.5 Downloading dependency 33 of 247: python3-pluggy:armhf=1.6.0-1 Downloading dependency 34 of 247: libp11-kit-dev:armhf=0.25.9-2 Downloading dependency 35 of 247: cpp-15:armhf=15.2.0-8 Downloading dependency 36 of 247: gettext-base:armhf=0.23.2-1 Downloading dependency 37 of 247: libgnutls-dane0t64:armhf=3.8.10-3 Downloading dependency 38 of 247: libisl23:armhf=0.27-1 Downloading dependency 39 of 247: zlib1g-dev:armhf=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 40 of 247: file:armhf=1:5.46-5 Downloading dependency 41 of 247: gcc:armhf=4:15.2.0-4 Downloading dependency 42 of 247: samtools:armhf=1.22.1-1 Downloading dependency 43 of 247: python3-all-dev:armhf=3.13.7-1 Downloading dependency 44 of 247: libjansson4:armhf=2.14-2+b3 Downloading dependency 45 of 247: libhts3t64:armhf=1.22.1+ds2-1 Downloading dependency 46 of 247: init-system-helpers:armhf=1.69 Downloading dependency 47 of 247: libarchive-zip-perl:armhf=1.68-1 Downloading dependency 48 of 247: libngtcp2-dev:armhf=1.16.0-1 Downloading dependency 49 of 247: libpsl5t64:armhf=0.21.2-1.1+b1 Downloading dependency 50 of 247: libfile-stripnondeterminism-perl:armhf=1.15.0-1 Downloading dependency 51 of 247: libevent-2.1-7t64:armhf=2.1.12-stable-10+b1 Downloading dependency 52 of 247: libidn2-dev:armhf=2.3.8-4 Downloading dependency 53 of 247: libmpc3:armhf=1.3.1-2 Downloading dependency 54 of 247: libcurl4-gnutls-dev:armhf=8.17.0-2 Downloading dependency 55 of 247: tzdata:armhf=2025b-5 Downloading dependency 56 of 247: libdeflate0:armhf=1.23-2 Downloading dependency 57 of 247: pkgconf-bin:armhf=1.8.1-4 Downloading dependency 58 of 247: libkadm5clnt-mit12:armhf=1.21.3-5 Downloading dependency 59 of 247: libatomic1:armhf=15.2.0-8 Downloading dependency 60 of 247: libgomp1:armhf=15.2.0-8 Downloading dependency 61 of 247: libgcc-15-dev:armhf=15.2.0-8 Downloading dependency 62 of 247: python3-setuptools:armhf=78.1.1-0.1 Downloading dependency 63 of 247: libudev1:armhf=258.1-2 Downloading dependency 64 of 247: sensible-utils:armhf=0.0.26 Downloading dependency 65 of 247: libmagic1t64:armhf=1:5.46-5 Downloading dependency 66 of 247: python3-jaraco.context:armhf=6.0.1-1 Downloading dependency 67 of 247: python3.13-dev:armhf=3.13.9-1 Downloading dependency 68 of 247: libelf1t64:armhf=0.194-1 Downloading dependency 69 of 247: libdpkg-perl:armhf=1.22.21 Downloading dependency 70 of 247: comerr-dev:armhf=2.1-1.47.2-3+b3 Downloading dependency 71 of 247: libzstd-dev:armhf=1.5.7+dfsg-2 Downloading dependency 72 of 247: python3-zipp:armhf=3.23.0-1 Downloading dependency 73 of 247: findutils:armhf=4.10.0-3 Downloading dependency 74 of 247: build-essential:armhf=12.12 Downloading dependency 75 of 247: sysvinit-utils:armhf=3.15-5 Downloading dependency 76 of 247: dh-strip-nondeterminism:armhf=1.15.0-1 Downloading dependency 77 of 247: libhts-dev:armhf=1.22.1+ds2-1 Downloading dependency 78 of 247: nettle-dev:armhf=3.10.2-1 Downloading dependency 79 of 247: python3-more-itertools:armhf=10.8.0-1 Downloading dependency 80 of 247: g++:armhf=4:15.2.0-4 Downloading dependency 81 of 247: libcrypt1:armhf=1:4.5.1-1 Downloading dependency 82 of 247: automake:armhf=1:1.18.1-2 Downloading dependency 83 of 247: libgmpxx4ldbl:armhf=2:6.3.0+dfsg-5 Downloading dependency 84 of 247: libpam-modules:armhf=1.7.0-5 Downloading dependency 85 of 247: patch:armhf=2.8-2 Downloading dependency 86 of 247: libpipeline1:armhf=1.5.8-1 Downloading dependency 87 of 247: readline-common:armhf=8.3-3 Downloading dependency 88 of 247: python3.13-minimal:armhf=3.13.9-1 Downloading dependency 89 of 247: dh-python:armhf=6.20250414 Downloading dependency 90 of 247: libpam0g:armhf=1.7.0-5 Downloading dependency 91 of 247: intltool-debian:armhf=0.35.0+20060710.6 Downloading dependency 92 of 247: libssh2-1-dev:armhf=1.11.1-1 Downloading dependency 93 of 247: dpkg:armhf=1.22.21 Downloading dependency 94 of 247: libunbound8:armhf=1.24.1-2 Downloading dependency 95 of 247: libunistring5:armhf=1.3-2 Downloading dependency 96 of 247: bzip2:armhf=1.0.8-6 Downloading dependency 97 of 247: python3-jaraco.functools:armhf=4.1.0-1 Downloading dependency 98 of 247: perl:armhf=5.40.1-6 Downloading dependency 99 of 247: liblzma-dev:armhf=5.8.1-2 Downloading dependency 100 of 247: bcftools:armhf=1.22-1 Downloading dependency 101 of 247: libhogweed6t64:armhf=3.10.2-1 Downloading dependency 102 of 247: libpython3.13:armhf=3.13.9-1 Downloading dependency 103 of 247: libmagic-mgc:armhf=1:5.46-5 Downloading dependency 104 of 247: libtasn1-6:armhf=4.20.0-2 Downloading dependency 105 of 247: debhelper:armhf=13.28 Downloading dependency 106 of 247: g++-arm-linux-gnueabihf:armhf=4:15.2.0-4 Downloading dependency 107 of 247: python3-packaging:armhf=25.0-1 Downloading dependency 108 of 247: rpcsvc-proto:armhf=1.4.3-1 Downloading dependency 109 of 247: libgdbm6t64:armhf=1.26-1 Downloading dependency 110 of 247: libk5crypto3:armhf=1.21.3-5 Downloading dependency 111 of 247: libnghttp3-9:armhf=1.12.0-1 Downloading dependency 112 of 247: libbz2-1.0:armhf=1.0.8-6 Downloading dependency 113 of 247: linux-libc-dev:armhf=6.17.7-2 Downloading dependency 114 of 247: libgnutls-openssl27t64:armhf=3.8.10-3 Downloading dependency 115 of 247: python3:armhf=3.13.7-1 Downloading dependency 116 of 247: libgmp-dev:armhf=2:6.3.0+dfsg-5 Downloading dependency 117 of 247: libngtcp2-16:armhf=1.16.0-1 Downloading dependency 118 of 247: libsystemd0:armhf=258.1-2 Downloading dependency 119 of 247: libstdc++6:armhf=15.2.0-8 Downloading dependency 120 of 247: xz-utils:armhf=5.8.1-2 Downloading dependency 121 of 247: libtasn1-6-dev:armhf=4.20.0-2 Downloading dependency 122 of 247: libubsan1:armhf=15.2.0-8 Downloading dependency 123 of 247: libbrotli-dev:armhf=1.1.0-2+b7 Downloading dependency 124 of 247: base-passwd:armhf=3.6.8 Downloading dependency 125 of 247: dwz:armhf=0.16-2 Downloading dependency 126 of 247: libdebconfclient0:armhf=0.281 Downloading dependency 127 of 247: libffi8:armhf=3.5.2-2 Downloading dependency 128 of 247: libcurl3t64-gnutls:armhf=8.17.0-2 Downloading dependency 129 of 247: krb5-multidev:armhf=1.21.3-5 Downloading dependency 130 of 247: libgssrpc4t64:armhf=1.21.3-5 Downloading dependency 131 of 247: libc-bin:armhf=2.41-12 Downloading dependency 132 of 247: libpython3-stdlib:armhf=3.13.7-1Get:1 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.13.7-1 [10.2 kB] Fetched 10.2 kB in 0s (563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_x5c_86m/libpython3-stdlib_3.13.7-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-9 [1092 kB] Fetched 1092 kB in 0s (48.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw1lxktqb/groff-base_1.23.0-9_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-2 [65.4 kB] Fetched 65.4 kB in 0s (3427 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4jbb9el/libuchardet0_0.0.8-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.2-3+b3 [24.3 kB] Fetched 24.3 kB in 0s (2377 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo5c5or2q/libcom-err2_1.47.2-3+b3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libldap2 armhf 2.6.10+dfsg-1 [168 kB] Fetched 168 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj8pr9q9o/libldap2_2.6.10+dfsg-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls-dev armhf 1.16.0-1 [23.0 kB] Fetched 23.0 kB in 0s (1446 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpriv9ka4f/libngtcp2-crypto-gnutls-dev_1.16.0-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf hostname armhf 3.25 [10.0 kB] Fetched 10.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphmkf_r0w/hostname_3.25_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libmd0 armhf 1.1.0-2+b1 [31.9 kB] Fetched 31.9 kB in 0s (2173 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxbx_gpn9/libmd0_1.1.0-2+b1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libsqlite3-0 armhf 3.46.1-8 [808 kB] Fetched 808 kB in 0s (45.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmputdn3xhz/libsqlite3-0_3.46.1-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 2.1.0-1 [7432 B] Fetched 7432 B in 0s (425 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdwqz23a/python3-iniconfig_2.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf gcc-15-arm-linux-gnueabihf armhf 15.2.0-8 [18.2 MB] Fetched 18.2 MB in 0s (194 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7woubj2y/gcc-15-arm-linux-gnueabihf_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libaudit1 armhf 1:4.1.2-1 [54.2 kB] Fetched 54.2 kB in 0s (3546 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1_armhf.deb' to '/srv/rebuilderd/tmp/tmpd1mdem8n/libaudit1_4.1.2-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf cpp-15-arm-linux-gnueabihf armhf 15.2.0-8 [9381 kB] Fetched 9381 kB in 0s (205 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptnp7oouc/cpp-15-arm-linux-gnueabihf_15.2.0-8_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libbinutils armhf 2.45-8 [346 kB] Fetched 346 kB in 0s (21.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8epcb3z/libbinutils_2.45-8_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libkdb5-10t64 armhf 1.21.3-5 [37.6 kB] Fetched 37.6 kB in 0s (2488 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_242vb3j/libkdb5-10t64_1.21.3-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-6 [8568 B] Fetched 8568 B in 0s (559 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyepz71zm/libkeyutils1_1.6.3-6_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libnettle8t64 armhf 3.10.2-1 [313 kB] Fetched 313 kB in 0s (29.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu4vtudzh/libnettle8t64_3.10.2-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Fetched 76.8 kB in 0s (4229 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxowb_cb6/libpsl-dev_0.21.2-1.1+b1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.3-3 [156 kB] Fetched 156 kB in 0s (7727 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6dlfqmel/libreadline8t64_8.3-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf mawk armhf 1.3.4.20250131-1 [131 kB] Fetched 131 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp32yvefcn/mawk_1.3.4.20250131-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpython3.13-dev armhf 3.13.9-1 [4064 kB] Fetched 4064 kB in 0s (76.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7x5ahv72/libpython3.13-dev_3.13.9-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx25rd671/libjs-sphinxdoc_8.2.3-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libtool all 2.5.4-7 [540 kB] Fetched 540 kB in 0s (47.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwrl1vqx6/libtool_2.5.4-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf cpp-arm-linux-gnueabihf armhf 4:15.2.0-4 [5304 B] Fetched 5304 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-arm-linux-gnueabihf_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmp7h5262rw/cpp-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libgdbm-compat4t64 armhf 1.26-1 [52.6 kB] Fetched 52.6 kB in 0s (3055 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppkgz8u9e/libgdbm-compat4t64_1.26-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Fetched 28.7 kB in 0s (1771 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps2c_fq43/libbz2-dev_1.0.8-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgnutls28-dev armhf 3.8.10-3 [1361 kB] Fetched 1361 kB in 0s (65.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw6opjp6s/libgnutls28-dev_3.8.10-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libc6 armhf 2.41-12 [2249 kB] Fetched 2249 kB in 0s (63.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvop_dezh/libc6_2.41-12_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Fetched 26.1 kB in 0s (1539 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9zeb1ogc/pkgconf_1.8.1-4_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgcc-s1 armhf 15.2.0-8 [36.9 kB] Fetched 36.9 kB in 0s (2033 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbr5va_s0/libgcc-s1_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.15.0-1 [92.4 kB] Fetched 92.4 kB in 0s (6083 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjcpstbfy/python3-typing-extensions_4.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf g++-15 armhf 15.2.0-8 [24.4 kB] Fetched 24.4 kB in 0s (1529 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppl3f_wsi/g++-15_15.2.0-8_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libkrb5support0 armhf 1.21.3-5 [30.4 kB] Fetched 30.4 kB in 0s (1861 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv6dfvepk/libkrb5support0_1.21.3-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libnghttp3-dev armhf 1.12.0-1 [86.2 kB] Fetched 86.2 kB in 0s (5123 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpem5h0qsu/libnghttp3-dev_1.12.0-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf ncurses-bin armhf 6.5+20250216-2 [429 kB] Fetched 429 kB in 0s (22.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp73gr8vvu/ncurses-bin_6.5+20250216-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (17.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkn2sch88/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libasan8 armhf 15.2.0-8 [2634 kB] Fetched 2634 kB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgzlus0fr/libasan8_15.2.0-8_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libsframe2 armhf 2.45-8 [77.3 kB] Fetched 77.3 kB in 0s (4235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeb272k2b/libsframe2_2.45-8_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libkadm5srv-mit12 armhf 1.21.3-5 [47.6 kB] Fetched 47.6 kB in 0s (3920 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5hfhk5dv/libkadm5srv-mit12_1.21.3-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Fetched 227 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8gp6boxv/libssh2-1t64_1.11.1-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf coreutils armhf 9.7-3 [2869 kB] Fetched 2869 kB in 0s (129 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp6g24o_t/coreutils_9.7-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libmount1 armhf 2.41.2-4 [192 kB] Fetched 192 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplimohs1t/libmount1_2.41.2-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (8344 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps3xfatsj/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf perl-base armhf 5.40.1-6 [1515 kB] Fetched 1515 kB in 0s (50.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3r3e59f/perl-base_5.40.1-6_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.13.7-1 [26.1 kB] Fetched 26.1 kB in 0s (1722 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplsp0s9eu/python3-dev_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libncurses6 armhf 6.5+20250216-2 [82.8 kB] Fetched 82.8 kB in 0s (5099 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbcszn9gg/libncurses6_6.5+20250216-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b7 [284 kB] Fetched 284 kB in 0s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgc82heq1/libbrotli1_1.1.0-2+b7_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf liblzma5 armhf 5.8.1-2 [297 kB] Fetched 297 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe2yonzv0/liblzma5_5.8.1-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.16.0-1 [22.5 kB] Fetched 22.5 kB in 0s (1208 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph27x5_f6/libngtcp2-crypto-gnutls8_1.16.0-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libc-dev-bin armhf 2.41-12 [56.8 kB] Fetched 56.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn0d76kzz/libc-dev-bin_2.41-12_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf binutils-common armhf 2.45-8 [2558 kB] Fetched 2558 kB in 0s (58.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiog0uwsj/binutils-common_2.45-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libnghttp2-dev armhf 1.64.0-1.1+b1 [104 kB] Fetched 104 kB in 0s (4714 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_wh1jcbv/libnghttp2-dev_1.64.0-1.1+b1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.28 [92.4 kB] Fetched 92.4 kB in 0s (5358 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpznzng1oz/libdebhelper-perl_13.28_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (810 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7g9iej8q/python3-autocommand_2.2.2-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libmpfr6 armhf 4.2.2-2 [605 kB] Fetched 605 kB in 0s (28.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3dqcx0kh/libmpfr6_4.2.2-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libhtscodecs2 armhf 1.6.1-2 [63.2 kB] Fetched 63.2 kB in 0s (3678 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpccaxzqep/libhtscodecs2_1.6.1-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf gcc-15 armhf 15.2.0-8 [495 kB] Fetched 495 kB in 0s (30.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphg8msql2/gcc-15_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.4.2-1 [266 kB] Fetched 266 kB in 0s (14.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwb_1quj8/python3-pytest_8.4.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.7.3-1 [149 kB] Fetched 149 kB in 0s (14.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx95lc88v/libexpat1-dev_2.7.3-1_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lew3tmq/libpython3.13-stdlib_3.13.9-1_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7gi_lv8_/libgssapi-krb5-2_1.21.3-5_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8jzwsjao/libtinfo6_6.5+20250216-2_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9o_zog4n/libsasl2-2_2.1.28+dfsg1-10_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphcr66r84/libpcre2-8-0_10.46-1_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuc8t286b/util-linux_2.41.2-4_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuiwyg710/libacl1_2.3.2-2+b1_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzj9w5sfp/librtmp-dev_2.4+20151223.gitfa8646d.1-3_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_00apaa/libcap-ng0_0.8.5-4+b1_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv111cuot/libcc1-0_15.2.0-8_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpspc1pr8u/libsmartcols1_2.41.2-4_armhf.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplic624lf/grep_3.12-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpython3.13-stdlib armhf 3.13.9-1 [1839 kB] Fetched 1839 kB in 0s (89.4 MB/s) Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgssapi-krb5-2 armhf 1.21.3-5 [116 kB] Fetched 116 kB in 0s (5455 kB/s) Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libtinfo6 armhf 6.5+20250216-2 [333 kB] Fetched 333 kB in 0s (15.0 MB/s) Get:1 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-10 [50.6 kB] Fetched 50.6 kB in 0s (3428 kB/s) Get:1 http://deb.debian.org/debian unstable/main armhf libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (868 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpj79ln0nu/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpcre2-8-0 armhf 10.46-1 [259 kB] Fetched 259 kB in 0s (13.6 MB/s) Get:1 http://deb.debian.org/debian unstable/main armhf util-linux armhf 2.41.2-4 [1075 kB] Fetched 1075 kB in 0s (59.4 MB/s) Get:1 http://deb.debian.org/debian unstable/main armhf libacl1 armhf 2.3.2-2+b1 [30.0 kB] Fetched 30.0 kB in 0s (1585 kB/s) Get:1 http://deb.debian.org/debian unstable/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-3 [63.2 kB] Fetched 63.2 kB in 0s (3700 kB/s) Get:1 http://deb.debian.org/debian unstable/main armhf libcap-ng0 armhf 0.8.5-4+b1 [16.1 kB] Fetched 16.1 kB in 0s (1110 kB/s) Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libcc1-0 armhf 15.2.0-8 [32.4 kB] Fetched 32.4 kB in 0s (2216 kB/s) Get:1 http://deb.debian.org/debian unstable/main armhf libsmartcols1 armhf 2.41.2-4 [129 kB] Fetched 129 kB in 0s (12.5 MB/s) Get:1 http://deb.debian.org/debian unstable/main armhf grep armhf 3.12-1 [433 kB] Fetched 433 kB in 0s (26.3 MB/s) Get:1 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1.1+b1 [63.3 kB] Fetched 63.3 kB in 0s (3230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0a62wscp/libnghttp2-14_1.64.0-1.1+b1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libperl5.40 armhf 5.40.1-6 [3624 kB] Fetched 3624 kB in 0s (75.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9f3ctu6l/libperl5.40_5.40.1-6_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libstdc++-15-dev armhf 15.2.0-8 [2443 kB] Fetched 2443 kB in 0s (61.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsd5r4vew/libstdc++-15-dev_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (80.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4kh2t2d5/dpkg-dev_1.22.21_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (32.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqsdma0bs/autoconf_2.72-3.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpython3-all-dev armhf 3.13.7-1 [1064 B] Fetched 1064 B in 0s (70.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphcdzbyub/libpython3-all-dev_3.13.7-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf make armhf 4.4.1-3 [450 kB] Fetched 450 kB in 0s (26.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkozwchc6/make_4.4.1-3_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf binutils-arm-linux-gnueabihf armhf 2.45-8 [858 kB] Fetched 858 kB in 0s (72.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2fspglca/binutils-arm-linux-gnueabihf_2.45-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.1-1 [1432 kB] Fetched 1432 kB in 0s (75.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_7aww97/man-db_2.13.1-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.7.3-1 [91.0 kB] Fetched 91.0 kB in 0s (4348 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptmk77rfj/libexpat1_2.7.3-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libattr1 armhf 1:2.5.2-3 [22.0 kB] Fetched 22.0 kB in 0s (1468 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_armhf.deb' to '/srv/rebuilderd/tmp/tmpeaq15y4k/libattr1_2.5.2-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf cpp armhf 4:15.2.0-4 [1572 B] Fetched 1572 B in 0s (101 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmp4d2kjbwy/cpp_15.2.0-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (13.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01oqjr4r/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libctf0 armhf 2.45-8 [62.4 kB] Fetched 62.4 kB in 0s (5274 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2duw7cxg/libctf0_2.45-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.13.7-1 [1044 B] Fetched 1044 B in 0s (98.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5yzdg2kf/python3-all_3.13.7-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libxml2-16 armhf 2.15.1+dfsg-0.3 [552 kB] Fetched 552 kB in 0s (27.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfx1y4sqy/libxml2-16_2.15.1+dfsg-0.3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnousbt4c/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf binutils armhf 2.45-8 [69.9 kB] Fetched 69.9 kB in 0s (4234 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1rt1l_zf/binutils_2.45-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libuuid1 armhf 2.41.2-4 [37.4 kB] Fetched 37.4 kB in 0s (3718 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpec6h_ijf/libuuid1_2.41.2-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libc6-dev armhf 2.41-12 [1327 kB] Fetched 1327 kB in 0s (67.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdzyifv7n/libc6-dev_2.41-12_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libcrypt-dev armhf 1:4.5.1-1 [132 kB] Fetched 132 kB in 0s (8988 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.5.1-1_armhf.deb' to '/srv/rebuilderd/tmp/tmphgc_gvc1/libcrypt-dev_4.5.1-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libkrb5-3 armhf 1.21.3-5 [284 kB] Fetched 284 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv382_web/libkrb5-3_1.21.3-5_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (2730 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37mkpft9/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.23-2 [44.6 kB] Fetched 44.6 kB in 0s (2950 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4d9mxofr/libdeflate-dev_1.23-2_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf perl-modules-5.40 all 5.40.1-6 [3019 kB] Fetched 3019 kB in 0s (116 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp28rvyk1c/perl-modules-5.40_5.40.1-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libctf-nobfd0 armhf 2.45-8 [130 kB] Fetched 130 kB in 0s (9082 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdwoxx1x1/libctf-nobfd0_2.45-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpython3.13-minimal armhf 3.13.9-1 [850 kB] Fetched 850 kB in 0s (31.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5qzw8bus/libpython3.13-minimal_3.13.9-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf sed armhf 4.9-2 [321 kB] Fetched 321 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo4zexpoh/sed_4.9-2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf debianutils armhf 5.23.2 [91.4 kB] Fetched 91.4 kB in 0s (5407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjl472nq4/debianutils_5.23.2_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf zlib1g armhf 1:1.3.dfsg+really1.3.1-1+b1 [75.2 kB] Fetched 75.2 kB in 0s (4465 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb' to '/srv/rebuilderd/tmp/tmpiw6gtfz4/zlib1g_1.3.dfsg+really1.3.1-1+b1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libssl3t64 armhf 3.5.4-1 [1989 kB] Fetched 1989 kB in 0s (90.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xij7cta/libssl3t64_3.5.4-1_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf libgnutls30t64 armhf 3.8.10-3 [1404 kB] Fetched 1404 kB in 0s (72.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgb2jge5/libgnutls30t64_3.8.10-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf base-files armhf 14 [72.9 kB] Fetched 72.9 kB in 0s (4676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpafxa9vkc/base-files_14_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-3 [53.0 kB] Fetched 53.0 kB in 0s (3514 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8kgyb58s/librtmp1_2.4+20151223.gitfa8646d.1-3_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-10 [18.3 kB] Fetched 18.3 kB in 0s (1245 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppuwom1fb/libsasl2-modules-db_2.1.28+dfsg1-10_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf python3-pygments all 2.18.0+dfsg-2 [836 kB] Fetched 836 kB in 0s (46.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqt85n9t8/python3-pygments_2.18.0+dfsg-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main armhf dash armhf 0.5.12-12 [90.4 kB] Fetched 90.4 kB in 0s (5954 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpimrocwqt/dash_0.5.12-12_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Fetched 31.8 kB in 0s (2012 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0mg4hh9/libpkgconf3_1.8.1-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libpam-modules-bin armhf 1.7.0-5 [45.2 kB] Fetched 45.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcvglx3jz/libpam-modules-bin_1.7.0-5_armhf.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z sid/main armhf g++-15-arm-linux-gnueabihf armhf 15.2.0-8 [10.2 MB] Fetched 10.2 MB in 0s (178 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk3ggil3i/g++-15-arm-linux-gnueabihf_15.2.0-8_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf libcap2 armhf 1:2.75-10+b1 [24.8 kB] Fetched 24.8 kB in 0s (1497 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b1_armhf.deb' to '/srv/rebuilderd/tmp/tmp3p4mn83w/libcap2_2.75-10+b1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf gcc-arm-linux-gnueabihf armhf 4:15.2.0-4 [1444 B] Fetched 1444 B in 0s (85.4 kB/s) dpkg-name: info: moved 'gcc-arm-linux-gnueabihf_4%3a15.2.0-4_armhf.deb' to '/srv/rebuilderd/tmp/tmpineed5yt/gcc-arm-linux-gnueabihf_15.2.0-4_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf tabix armhf 1.22.1+ds2-1 [432 kB] Fetched 432 kB in 0s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps1x_o_s0/tabix_1.22.1+ds2-1_armhf.deb' Get:1 http://deb.debian.org/debian unstable/main armhf tar armhf 1.35+dfsg-3.1 [794 kB] Fetched 794 kB in 0s (58.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphsxrkwqe/tar_1.35+dfsg-3.1_armhf.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture arm64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_arm64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpy5s8kte8/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: armhf is different from arm64 but can be executed natively I: using /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR 127.0.0.1 - - [28/Nov/2025 16:30:47] code 404, message File not found 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42041 ./ InRelease 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:42041 ./ Release [462 B] 127.0.0.1 - - [28/Nov/2025 16:30:47] code 404, message File not found 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42041 ./ Release.gpg 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:42041 ./ Packages [303 kB] Fetched 304 kB in 0s (8089 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./gcc-15-base_15.2.0-8_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libc6_2.41-12_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libgcc-s1_15.2.0-8_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./mawk_1.3.4.20250131-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./base-files_14_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libtinfo6_6.5%2b20250216-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./debianutils_5.23.2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./bash_5.3-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libacl1_2.3.2-2%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libattr1_2.5.2-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libcap2_2.75-10%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libgmp10_6.3.0%2bdfsg-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libpcre2-8-0_10.46-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libselinux1_3.9-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libzstd1_1.5.7%2bdfsg-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libssl3t64_3.5.4-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./openssl-provider-legacy_3.5.4-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libsystemd0_258.1-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./coreutils_9.7-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./dash_0.5.12-12_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./diffutils_3.12-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libbz2-1.0_1.0.8-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./liblzma5_5.8.1-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libmd0_1.1.0-2%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./tar_1.35%2bdfsg-3.1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./dpkg_1.22.21_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./findutils_4.10.0-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./grep_3.12-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./gzip_1.13-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./hostname_3.25_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./ncurses-bin_6.5%2b20250216-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libcrypt1_4.5.1-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./perl-base_5.40.1-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./sed_4.9-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libcap-ng0_0.8.5-4%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libaudit1_4.1.2-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libdb5.3t64_5.3.28%2bdfsg2-10_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libpam0g_1.7.0-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libpam-modules-bin_1.7.0-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libpam-modules_1.7.0-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libblkid1_2.41.2-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libmount1_2.41.2-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libsmartcols1_2.41.2-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libudev1_258.1-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libuuid1_2.41.2-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./util-linux_2.41.2-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libdebconfclient0_0.281_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./base-passwd_3.6.8_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./libc-bin_2.41-12_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:47] "GET /./sysvinit-utils_3.15-5_armhf.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR 127.0.0.1 - - [28/Nov/2025 16:30:49] code 404, message File not found 127.0.0.1 - - [28/Nov/2025 16:30:49] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42041 ./ InRelease 127.0.0.1 - - [28/Nov/2025 16:30:49] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:42041 ./ Release 127.0.0.1 - - [28/Nov/2025 16:30:49] code 404, message File not found 127.0.0.1 - - [28/Nov/2025 16:30:49] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42041 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [28/Nov/2025 16:30:55] "GET /./libexpat1_2.7.3-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:55] "GET /./libpython3.13-minimal_3.13.9-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:55] "GET /./python3.13-minimal_3.13.9-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:55] "GET /./python3-minimal_3.13.7-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:55] "GET /./media-types_14.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:55] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:55] "GET /./tzdata_2025b-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:55] "GET /./libffi8_3.5.2-2_armhf.deb HTTP/1.1" 200 - 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127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libidn2-dev_2.3.8-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libbrotli-dev_1.1.0-2%2bb7_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libgnutls-openssl27t64_3.8.10-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libtasn1-6-dev_4.20.0-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libgmpxx4ldbl_6.3.0%2bdfsg-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libgmp-dev_6.3.0%2bdfsg-5_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./nettle-dev_3.10.2-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libgnutls28-dev_3.8.10-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libpkgconf3_1.8.1-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./pkgconf-bin_1.8.1-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./pkgconf_1.8.1-4_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libnghttp2-dev_1.64.0-1.1%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libnghttp3-dev_1.12.0-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libngtcp2-crypto-gnutls-dev_1.16.0-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libpsl-dev_0.21.2-1.1%2bb1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./librtmp-dev_2.4%2b20151223.gitfa8646d.1-3_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libssh2-1-dev_1.11.1-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libzstd-dev_1.5.7%2bdfsg-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libcurl4-gnutls-dev_8.17.0-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libbz2-dev_1.0.8-6_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libdeflate-dev_1.23-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./liblzma-dev_5.8.1-2_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./libhts-dev_1.22.1%2bds2-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./dh-python_6.20250414_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./python3-packaging_25.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./python3-iniconfig_2.1.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./python3-pygments_2.18.0%2bdfsg-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./python3-pytest_8.4.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./tabix_1.22.1%2bds2-1_armhf.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Nov/2025 16:30:57] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpy5s8kte8/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR Reading package lists... Building dependency tree... Reading state information... bsdextrautils is already the newest version (2.41.2-4). bsdextrautils set to manually installed. dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. python3.13 is already the newest version (3.13.9-1). python3.13 set to manually installed. m4 is already the newest version (1.4.20-2). m4 set to manually installed. libp11-kit0 is already the newest version (0.25.9-2). libp11-kit0 set to manually installed. autopoint is already the newest version (0.23.2-1). autopoint set to manually installed. diffutils is already the newest version (1:3.12-1). libkrb5-dev is already the newest version (1.21.3-5). libkrb5-dev set to manually installed. python3-typeguard is already the newest version (4.4.4-1). python3-typeguard set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libldap-dev is already the newest version (2.6.10+dfsg-1). libldap-dev set to manually installed. openssl-provider-legacy is already the newest version (3.5.4-1). libgmp10 is already the newest version (2:6.3.0+dfsg-5). libidn2-0 is already the newest version (2.3.8-4). libidn2-0 set to manually installed. python3-minimal is already the newest version (3.13.7-1). python3-minimal set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-10). autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. libselinux1 is already the newest version (3.9-2). gettext is already the newest version (0.23.2-1). gettext set to manually installed. bash is already the newest version (5.3-1). libssl-dev is already the newest version (3.5.4-1). libssl-dev set to manually installed. cython3 is already the newest version (3.1.6+dfsg-2). cython3 set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. gcc-15-base is already the newest version (15.2.0-8). libpython3-dev is already the newest version (3.13.7-1). libpython3-dev set to manually installed. gzip is already the newest version (1.13-1). libblkid1 is already the newest version (2.41.2-4). libzstd1 is already the newest version (1.5.7+dfsg-2). netbase is already the newest version (6.5). netbase set to manually installed. python3-pluggy is already the newest version (1.6.0-1). python3-pluggy set to manually installed. libp11-kit-dev is already the newest version (0.25.9-2). libp11-kit-dev set to manually installed. cpp-15 is already the newest version (15.2.0-8). cpp-15 set to manually installed. gettext-base is already the newest version (0.23.2-1). gettext-base set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.10-3). libgnutls-dane0t64 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. gcc is already the newest version (4:15.2.0-4). gcc set to manually installed. samtools is already the newest version (1.22.1-1). samtools set to manually installed. python3-all-dev is already the newest version (3.13.7-1). python3-all-dev set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libhts3t64 is already the newest version (1.22.1+ds2-1). libhts3t64 set to manually installed. init-system-helpers is already the newest version (1.69). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libngtcp2-dev is already the newest version (1.16.0-1). libngtcp2-dev set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-2.1-7t64 set to manually installed. libidn2-dev is already the newest version (2.3.8-4). libidn2-dev set to manually installed. libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. libcurl4-gnutls-dev is already the newest version (8.17.0-2). libcurl4-gnutls-dev set to manually installed. tzdata is already the newest version (2025b-5). tzdata set to manually installed. libdeflate0 is already the newest version (1.23-2). libdeflate0 set to manually installed. pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. libkadm5clnt-mit12 is already the newest version (1.21.3-5). libkadm5clnt-mit12 set to manually installed. libatomic1 is already the newest version (15.2.0-8). libatomic1 set to manually installed. libgomp1 is already the newest version (15.2.0-8). libgomp1 set to manually installed. libgcc-15-dev is already the newest version (15.2.0-8). libgcc-15-dev set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. libudev1 is already the newest version (258.1-2). sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. python3.13-dev is already the newest version (3.13.9-1). python3.13-dev set to manually installed. libelf1t64 is already the newest version (0.194-1). libelf1t64 set to manually installed. libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. comerr-dev is already the newest version (2.1-1.47.2-3+b3). comerr-dev set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-2). libzstd-dev set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. findutils is already the newest version (4.10.0-3). build-essential is already the newest version (12.12). build-essential set to manually installed. sysvinit-utils is already the newest version (3.15-5). dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. libhts-dev is already the newest version (1.22.1+ds2-1). libhts-dev set to manually installed. nettle-dev is already the newest version (3.10.2-1). nettle-dev set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. g++ is already the newest version (4:15.2.0-4). g++ set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1). automake is already the newest version (1:1.18.1-2). automake set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5). libgmpxx4ldbl set to manually installed. libpam-modules is already the newest version (1.7.0-5). patch is already the newest version (2.8-2). patch set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. readline-common is already the newest version (8.3-3). readline-common set to manually installed. python3.13-minimal is already the newest version (3.13.9-1). python3.13-minimal set to manually installed. dh-python is already the newest version (6.20250414). dh-python set to manually installed. libpam0g is already the newest version (1.7.0-5). intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. dpkg is already the newest version (1.22.21). libunbound8 is already the newest version (1.24.1-2). libunbound8 set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. perl is already the newest version (5.40.1-6). perl set to manually installed. liblzma-dev is already the newest version (5.8.1-2). liblzma-dev set to manually installed. bcftools is already the newest version (1.22-1). bcftools set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1). libhogweed6t64 set to manually installed. libpython3.13 is already the newest version (3.13.9-1). libpython3.13 set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. debhelper is already the newest version (13.28). debhelper set to manually installed. g++-arm-linux-gnueabihf is already the newest version (4:15.2.0-4). g++-arm-linux-gnueabihf set to manually installed. python3-packaging is already the newest version (25.0-1). python3-packaging set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. libnghttp3-9 is already the newest version (1.12.0-1). libnghttp3-9 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). linux-libc-dev is already the newest version (6.17.7-2). linux-libc-dev set to manually installed. libgnutls-openssl27t64 is already the newest version (3.8.10-3). libgnutls-openssl27t64 set to manually installed. python3 is already the newest version (3.13.7-1). python3 set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-5). libgmp-dev set to manually installed. libngtcp2-16 is already the newest version (1.16.0-1). libngtcp2-16 set to manually installed. libsystemd0 is already the newest version (258.1-2). libstdc++6 is already the newest version (15.2.0-8). libstdc++6 set to manually installed. xz-utils is already the newest version (5.8.1-2). xz-utils set to manually installed. libtasn1-6-dev is already the newest version (4.20.0-2). libtasn1-6-dev set to manually installed. libubsan1 is already the newest version (15.2.0-8). libubsan1 set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b7). libbrotli-dev set to manually installed. base-passwd is already the newest version (3.6.8). dwz is already the newest version (0.16-2). dwz set to manually installed. libdebconfclient0 is already the newest version (0.281). libffi8 is already the newest version (3.5.2-2). libffi8 set to manually installed. libcurl3t64-gnutls is already the newest version (8.17.0-2). libcurl3t64-gnutls set to manually installed. krb5-multidev is already the newest version (1.21.3-5). krb5-multidev set to manually installed. libgssrpc4t64 is already the newest version (1.21.3-5). libgssrpc4t64 set to manually installed. libc-bin is already the newest version (2.41-12). libpython3-stdlib is already the newest version (3.13.7-1). libpython3-stdlib set to manually installed. groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. libuchardet0 is already the newest version (0.0.8-2). libuchardet0 set to manually installed. libcom-err2 is already the newest version (1.47.2-3+b3). libcom-err2 set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. libngtcp2-crypto-gnutls-dev is already the newest version (1.16.0-1). libngtcp2-crypto-gnutls-dev set to manually installed. hostname is already the newest version (3.25). libmd0 is already the newest version (1.1.0-2+b1). libsqlite3-0 is already the newest version (3.46.1-8). libsqlite3-0 set to manually installed. python3-iniconfig is already the newest version (2.1.0-1). python3-iniconfig set to manually installed. gcc-15-arm-linux-gnueabihf is already the newest version (15.2.0-8). gcc-15-arm-linux-gnueabihf set to manually installed. libaudit1 is already the newest version (1:4.1.2-1). cpp-15-arm-linux-gnueabihf is already the newest version (15.2.0-8). cpp-15-arm-linux-gnueabihf set to manually installed. libbinutils is already the newest version (2.45-8). libbinutils set to manually installed. libkdb5-10t64 is already the newest version (1.21.3-5). libkdb5-10t64 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. libnettle8t64 is already the newest version (3.10.2-1). libnettle8t64 set to manually installed. libpsl-dev is already the newest version (0.21.2-1.1+b1). libpsl-dev set to manually installed. libreadline8t64 is already the newest version (8.3-3). libreadline8t64 set to manually installed. mawk is already the newest version (1.3.4.20250131-1). libpython3.13-dev is already the newest version (3.13.9-1). libpython3.13-dev set to manually installed. libjs-sphinxdoc is already the newest version (8.2.3-8). libjs-sphinxdoc set to manually installed. libtool is already the newest version (2.5.4-7). libtool set to manually installed. cpp-arm-linux-gnueabihf is already the newest version (4:15.2.0-4). cpp-arm-linux-gnueabihf set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. libgnutls28-dev is already the newest version (3.8.10-3). libgnutls28-dev set to manually installed. libc6 is already the newest version (2.41-12). pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. libgcc-s1 is already the newest version (15.2.0-8). python3-typing-extensions is already the newest version (4.15.0-1). python3-typing-extensions set to manually installed. g++-15 is already the newest version (15.2.0-8). g++-15 set to manually installed. libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. libnghttp3-dev is already the newest version (1.12.0-1). libnghttp3-dev set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). ncurses-base is already the newest version (6.5+20250216-2). libasan8 is already the newest version (15.2.0-8). libasan8 set to manually installed. libsframe2 is already the newest version (2.45-8). libsframe2 set to manually installed. libkadm5srv-mit12 is already the newest version (1.21.3-5). libkadm5srv-mit12 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. coreutils is already the newest version (9.7-3). libmount1 is already the newest version (2.41.2-4). debconf is already the newest version (1.5.91). perl-base is already the newest version (5.40.1-6). python3-dev is already the newest version (3.13.7-1). python3-dev set to manually installed. libncurses6 is already the newest version (6.5+20250216-2). libncurses6 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. liblzma5 is already the newest version (5.8.1-2). libngtcp2-crypto-gnutls8 is already the newest version (1.16.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. binutils-common is already the newest version (2.45-8). binutils-common set to manually installed. libnghttp2-dev is already the newest version (1.64.0-1.1+b1). libnghttp2-dev set to manually installed. libdebhelper-perl is already the newest version (13.28). libdebhelper-perl set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. libmpfr6 is already the newest version (4.2.2-2). libmpfr6 set to manually installed. libhtscodecs2 is already the newest version (1.6.1-2). libhtscodecs2 set to manually installed. gcc-15 is already the newest version (15.2.0-8). gcc-15 set to manually installed. python3-pytest is already the newest version (8.4.2-1). python3-pytest set to manually installed. libexpat1-dev is already the newest version (2.7.3-1). libexpat1-dev set to manually installed. libpython3.13-stdlib is already the newest version (3.13.9-1). libpython3.13-stdlib set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). libsasl2-2 is already the newest version (2.1.28+dfsg1-10). libsasl2-2 set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). libpcre2-8-0 is already the newest version (10.46-1). util-linux is already the newest version (2.41.2-4). libacl1 is already the newest version (2.3.2-2+b1). librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp-dev set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). libcc1-0 is already the newest version (15.2.0-8). libcc1-0 set to manually installed. libsmartcols1 is already the newest version (2.41.2-4). grep is already the newest version (3.12-1). libnghttp2-14 is already the newest version (1.64.0-1.1+b1). libnghttp2-14 set to manually installed. libperl5.40 is already the newest version (5.40.1-6). libperl5.40 set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-8). libstdc++-15-dev set to manually installed. dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libpython3-all-dev is already the newest version (3.13.7-1). libpython3-all-dev set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. binutils-arm-linux-gnueabihf is already the newest version (2.45-8). binutils-arm-linux-gnueabihf set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libexpat1 is already the newest version (2.7.3-1). libexpat1 set to manually installed. libattr1 is already the newest version (1:2.5.2-3). cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libctf0 is already the newest version (2.45-8). libctf0 set to manually installed. python3-all is already the newest version (3.13.7-1). python3-all set to manually installed. libxml2-16 is already the newest version (2.15.1+dfsg-0.3). libxml2-16 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). binutils is already the newest version (2.45-8). binutils set to manually installed. libuuid1 is already the newest version (2.41.2-4). libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. libcrypt-dev is already the newest version (1:4.5.1-1). libcrypt-dev set to manually installed. libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. libdeflate-dev is already the newest version (1.23-2). libdeflate-dev set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-6). perl-modules-5.40 set to manually installed. libctf-nobfd0 is already the newest version (2.45-8). libctf-nobfd0 set to manually installed. libpython3.13-minimal is already the newest version (3.13.9-1). libpython3.13-minimal set to manually installed. sed is already the newest version (4.9-2). debianutils is already the newest version (5.23.2). zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libssl3t64 is already the newest version (3.5.4-1). libgnutls30t64 is already the newest version (3.8.10-3). libgnutls30t64 set to manually installed. base-files is already the newest version (14). librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp1 set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-10). libsasl2-modules-db set to manually installed. python3-pygments is already the newest version (2.18.0+dfsg-2). python3-pygments set to manually installed. dash is already the newest version (0.5.12-12). libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). g++-15-arm-linux-gnueabihf is already the newest version (15.2.0-8). g++-15-arm-linux-gnueabihf set to manually installed. libcap2 is already the newest version (1:2.75-10+b1). gcc-arm-linux-gnueabihf is already the newest version (4:15.2.0-4). gcc-arm-linux-gnueabihf set to manually installed. tabix is already the newest version (1.22.1+ds2-1). tabix set to manually installed. tar is already the newest version (1.35+dfsg-3.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR (Reading database ... 18377 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.zDBRyKKPIR... I: success in 43.0166 seconds Downloading dependency 133 of 247: groff-base:armhf=1.23.0-9 Downloading dependency 134 of 247: libuchardet0:armhf=0.0.8-2 Downloading dependency 135 of 247: libcom-err2:armhf=1.47.2-3+b3 Downloading dependency 136 of 247: libldap2:armhf=2.6.10+dfsg-1 Downloading dependency 137 of 247: libngtcp2-crypto-gnutls-dev:armhf=1.16.0-1 Downloading dependency 138 of 247: hostname:armhf=3.25 Downloading dependency 139 of 247: libmd0:armhf=1.1.0-2+b1 Downloading dependency 140 of 247: libsqlite3-0:armhf=3.46.1-8 Downloading dependency 141 of 247: python3-iniconfig:armhf=2.1.0-1 Downloading dependency 142 of 247: gcc-15-arm-linux-gnueabihf:armhf=15.2.0-8 Downloading dependency 143 of 247: libaudit1:armhf=1:4.1.2-1 Downloading dependency 144 of 247: cpp-15-arm-linux-gnueabihf:armhf=15.2.0-8 Downloading dependency 145 of 247: libbinutils:armhf=2.45-8 Downloading dependency 146 of 247: libkdb5-10t64:armhf=1.21.3-5 Downloading dependency 147 of 247: 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of 247: libsasl2-2:armhf=2.1.28+dfsg1-10 Downloading dependency 195 of 247: libaudit-common:armhf=1:4.1.2-1 Downloading dependency 196 of 247: libpcre2-8-0:armhf=10.46-1 Downloading dependency 197 of 247: util-linux:armhf=2.41.2-4 Downloading dependency 198 of 247: libacl1:armhf=2.3.2-2+b1 Downloading dependency 199 of 247: librtmp-dev:armhf=2.4+20151223.gitfa8646d.1-3 Downloading dependency 200 of 247: libcap-ng0:armhf=0.8.5-4+b1 Downloading dependency 201 of 247: libcc1-0:armhf=15.2.0-8 Downloading dependency 202 of 247: libsmartcols1:armhf=2.41.2-4 Downloading dependency 203 of 247: grep:armhf=3.12-1 Downloading dependency 204 of 247: libnghttp2-14:armhf=1.64.0-1.1+b1 Downloading dependency 205 of 247: libperl5.40:armhf=5.40.1-6 Downloading dependency 206 of 247: libstdc++-15-dev:armhf=15.2.0-8 Downloading dependency 207 of 247: dpkg-dev:armhf=1.22.21 Downloading dependency 208 of 247: autoconf:armhf=2.72-3.1 Downloading dependency 209 of 247: libpython3-all-dev:armhf=3.13.7-1 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libpkgconf3:armhf=1.8.1-4 Downloading dependency 242 of 247: libpam-modules-bin:armhf=1.7.0-5 Downloading dependency 243 of 247: g++-15-arm-linux-gnueabihf:armhf=15.2.0-8 Downloading dependency 244 of 247: libcap2:armhf=1:2.75-10+b1 Downloading dependency 245 of 247: gcc-arm-linux-gnueabihf:armhf=4:15.2.0-4 Downloading dependency 246 of 247: tabix:armhf=1.22.1+ds2-1 Downloading dependency 247 of 247: tar:armhf=1.35+dfsg-3.1 env --chdir=/srv/rebuilderd/tmp/rebuilderdmyJOJf/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1763125845 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuild_bdM5D/debrebuild.sbuildrc.PSaLXpfMLL7s sbuild --build=armhf --host=armhf --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuild_bdM5D/debrebuild.tar.tuIRFYlS7sVJ --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=python-pysam-0.23.3+ds /srv/rebuilderd/tmp/rebuilderdmyJOJf/inputs/python-pysam_0.23.3+ds-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on codethink01-arm64 +==============================================================================+ | python-pysam 0.23.3+ds-2 (armhf) Fri, 28 Nov 2025 16:31:30 +0000 | +==============================================================================+ Package: python-pysam Version: 0.23.3+ds-2 Source Version: 0.23.3+ds-2 Distribution: unstable Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuild_bdM5D/debrebuild.tar.tuIRFYlS7sVJ to /srv/rebuilderd/tmp/tmp.sbuild.X6Z7aA0UDw... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 28 Nov 2025 16:31:36 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdmyJOJf/inputs/python-pysam_0.23.3+ds-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdmyJOJf/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 28 Nov 2025 16:31:39 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-VTKC6c/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 28 Nov 2025 16:31:44 +0000 | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment Fri, 28 Nov 2025 16:31:44 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.57+deb13-cloud-arm64 #1 SMP Debian 6.12.57-1 (2025-11-05) arm64 (aarch64) Toolchain package versions: binutils_2.45-8 dpkg-dev_1.22.21 g++-15_15.2.0-8 gcc-15_15.2.0-8 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-8 libstdc++6_15.2.0-8 linux-libc-dev_6.17.7-2 Package versions: autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 bcftools_1.22-1 binutils_2.45-8 binutils-arm-linux-gnueabihf_2.45-8 binutils-common_2.45-8 bsdextrautils_2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-3+b3 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-8 cpp-15-arm-linux-gnueabihf_15.2.0-8 cpp-arm-linux-gnueabihf_4:15.2.0-4 cython3_3.1.6+dfsg-2 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debianutils_5.23.2 dh-autoreconf_21 dh-python_6.20250414 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-8 g++-15-arm-linux-gnueabihf_15.2.0-8 g++-arm-linux-gnueabihf_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-8 gcc-15-arm-linux-gnueabihf_15.2.0-8 gcc-15-base_15.2.0-8 gcc-arm-linux-gnueabihf_4:15.2.0-4 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_15.2.0-8 libatomic1_15.2.0-8 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-8 libblkid1_2.41.2-4 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-8 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45-8 libctf0_2.45-8 libcurl3t64-gnutls_8.17.0-2 libcurl4-gnutls-dev_8.17.0-2 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.281 libdebhelper-perl_13.28 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdpkg-perl_1.22.21 libelf1t64_0.194-1 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.3-1 libexpat1-dev_2.7.3-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-8 libgcc-s1_15.2.0-8 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp-dev_2:6.3.0+dfsg-5 libgmp10_2:6.3.0+dfsg-5 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libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-7 libubsan1_15.2.0-8 libuchardet0_0.0.8-2 libudev1_258.1-2 libunbound8_1.24.1-2 libunistring5_1.3-2 libuuid1_2.41.2-4 libxml2-16_2.15.1+dfsg-0.3 libzstd-dev_1.5.7+dfsg-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.17.7-2 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_14.0.0 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 nettle-dev_3.10.2-1 openssl-provider-legacy_3.5.4-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.7-1 python3-all_3.13.7-1 python3-all-dev_3.13.7-1 python3-autocommand_2.2.2-3 python3-dev_3.13.7-1 python3-inflect_7.5.0-1 python3-iniconfig_2.1.0-1 python3-jaraco.context_6.0.1-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.7-1 python3-more-itertools_10.8.0-1 python3-packaging_25.0-1 python3-pkg-resources_78.1.1-0.1 python3-pluggy_1.6.0-1 python3-pygments_2.18.0+dfsg-2 python3-pytest_8.4.2-1 python3-setuptools_78.1.1-0.1 python3-typeguard_4.4.4-1 python3-typing-extensions_4.15.0-1 python3-zipp_3.23.0-1 python3.13_3.13.9-1 python3.13-dev_3.13.9-1 python3.13-minimal_3.13.9-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 samtools_1.22.1-1 sed_4.9-2 sensible-utils_0.0.26 sysvinit-utils_3.15-5 tabix_1.22.1+ds2-1 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Fri, 28 Nov 2025 16:31:44 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pysam Binary: python3-pysam, python-pysam-tests Architecture: any all Version: 0.23.3+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://pysam.readthedocs.org/en/latest Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix , samtools , bcftools , python3-pytest Package-List: python-pysam-tests deb python optional arch=all python3-pysam deb python optional arch=any Checksums-Sha1: 1b49a3366585afd7a0d97e4a8a76f6c6edbf8d7f 1504032 python-pysam_0.23.3+ds.orig.tar.xz 7bc9556aeedcb1571fd39804eb9968e197416f66 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Checksums-Sha256: 2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 1504032 python-pysam_0.23.3+ds.orig.tar.xz 27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Files: f901cb0c76035311780a8148d00734cb 1504032 python-pysam_0.23.3+ds.orig.tar.xz d24853188d4c0ff3160b32d4c6619401 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Dgit: 06ed25e577b1b799ea2bb4f676c9da59d516cfd3 debian archive/debian/0.23.3+ds-2 https://git.dgit.debian.org/python-pysam -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmkXLa8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr3xBAAlFUQPSpK492NL+m6/Kxsz8hlkUjE ZQW+4U8gJnyBAREXwTr/3TJJ/0moSCWDnJu2QelRPD7wW6a3ZttA++xhsbuh2+fv 1OyAGQ73stTIuw9fGcqDJFfDBAliEsUnvkUAywuXZvRqNHNVl+4m4hzsMFtjAqzv 5YrlBUqjOEN2BoY/bwZ/CdhIsQDylegmSifGUtZyBhBkjtiqeXOukhlAAXfCx2Km wdk56vI9h2+JBpjYhnHFicJaE5mJ0cjvCK1f3wKLj2sHtAU+8NHiCEOohTouTcwp fhp9JtZH2+wuse9DwGeLXBeoFPOgYtVJvo+x4batasPJi9I4GNmKhB10My/GAiVu bHH++mUj1O3uOzHIniJcX2Abgl5HzbzfkCYXkjPa2JK6EtRvVxGQkG91ii+hvbtL LmC15gqqrjQcVSfWnHDBd2+B5b/vcvmPTuQdFFod1EFklvXgsC/WBIs+GYGM7saq ghrG7CHWYCoJ9s0YWpoU9xP61NtE1KG1Utz48I59iXAjhn7Vv/mcLeaSJFUQvMpc dad8n1PoA1+i8O34PoaHt+1mWBkOalGPukk/GtQOAuNjy57NcolFlkZnVTKDx/mU gphsTKzueICqKkvyzK0cgw10v5id74S5OSfMUAx/X6zXJ3WBGlPKETPhWj1nWiUn z3nSw6divArBM40= =lkGL -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./python-pysam_0.23.3+ds-2.dsc: unsupported subcommand dpkg-source: info: extracting python-pysam in /build/reproducible-path/python-pysam-0.23.3+ds dpkg-source: info: unpacking python-pysam_0.23.3+ds.orig.tar.xz dpkg-source: info: unpacking python-pysam_0.23.3+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_remote.patch dpkg-source: info: applying clean_less dpkg-source: info: applying skip-test-on-32-bit.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1763125845 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package python-pysam dpkg-buildpackage: info: source version 0.23.3+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean cd tests/pysam_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running clean removing '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -f \ pysam/config.py \ pysam/config.h \ pysam/lib*.c \ samtools/config.h \ bcftools/config.h rm -rf pysam.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running build running build_py creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include running egg_info creating pysam.egg-info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt writing manifest file 'pysam.egg-info/SOURCES.txt' reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext checking for arm-linux-gnueabihf-gcc option to enable C99 features... creating build/temp.linux-armv7l-cpython-313/pysam arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c pysam/conftest_cstd.c -o build/temp.linux-armv7l-cpython-313/pysam/conftest_cstd.o arm-linux-gnueabihf-gcc option to enable C99 features: none needed Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/htslib_util.c -o build/temp.linux-armv7l-cpython-313/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libchtslib.c -o build/temp.linux-armv7l-cpython-313/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/htslib_util.o build/temp.linux-armv7l-cpython-313/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-armv7l-cpython-313/samtools creating build/temp.linux-armv7l-cpython-313/samtools/lz4 arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-cpython-313/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/cram_size.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-cpython-313/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/reference.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/reset.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-cpython-313/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcsamtools.o build/temp.linux-armv7l-cpython-313/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_consensus.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/consensus_pileup.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/coverage.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/cram_size.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/dict.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/faidx.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/lz4/lz4.o build/temp.linux-armv7l-cpython-313/samtools/padding.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/phase.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/reference.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/reset.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/sample.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/samtools.pysam.o build/temp.linux-armv7l-cpython-313/samtools/stats.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-cpython-313/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-armv7l-cpython-313/bcftools arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/edlib.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/gff.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-cpython-313/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-cpython-313/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/bcftools.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/bin.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/cols.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/convert.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/csq.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/dist.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/edlib.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/em.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/filter.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/gff.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/main.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/read_consensus.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfhead.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-cpython-313/bcftools/version.c.pysam.o build/temp.linux-armv7l-cpython-313/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcutils.c -o build/temp.linux-armv7l-cpython-313/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/pysam_util.c -o build/temp.linux-armv7l-cpython-313/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcutils.o build/temp.linux-armv7l-cpython-313/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcsamtools.cpython-313-arm-linux-gnueabihf -lcbcftools.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2564:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2569:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2574:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2613:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2618:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2623:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-cpython-313/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-cpython-313/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-cpython-313/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libctabix.c -o build/temp.linux-armv7l-cpython-313/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-cpython-313/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbcf.c -o build/temp.linux-armv7l-cpython-313/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-cpython-313/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-cpython-313/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcvcf.c -o build/temp.linux-armv7l-cpython-313/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/arm-linux-gnueabihf -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/arm-linux-gnueabihf -lz -lhts -lchtslib.cpython-313-arm-linux-gnueabihf -lcutils.cpython-313-arm-linux-gnueabihf -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' cd tests/pysam_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' samtools faidx ex1.fa samtools view --no-PG -bo ex1.bam -t ex1.fa.fai ex1.sam.gz samtools mpileup -f ex1.fa ex1.bam | gzip > ex1.pileup.gz [mpileup] 1 samples in 1 input files gunzip < ex1.sam.gz > ex1.sam samtools index ex1.bam samtools view --no-PG -h ex1.bam | gzip > ex2.sam.gz gunzip < ex2.sam.gz > ex2.sam samtools view --no-PG -bo ex2.bam ex2.sam samtools index ex2.bam samtools calmd --no-PG --output-fmt BAM ex2.bam ex1.fa > with_md.sam.gz [bam_fillmd1] different NM for read 'EAS139_11:7:46:695:738': 3 -> 8 [bam_fillmd1] different NM for read 'EAS218_4:1:48:9:409': 0 -> 5 [bam_fillmd1] different NM for read 'B7_591:7:200:192:373': 0 -> 5 [bam_fillmd1] different NM for read 'EAS56_65:1:163:846:223': 0 -> 5 [bam_fillmd1] different NM for read 'EAS114_30:7:283:799:560': 0 -> 5 [bam_fillmd1] different NM for read 'B7_595:4:84:802:737': 0 -> 4 [bam_fillmd1] different NM for read 'EAS51_66:5:308:400:602': 0 -> 3 [bam_fillmd1] different NM for read 'EAS54_81:2:285:367:932': 0 -> 3 [bam_fillmd1] different NM for read 'EAS114_39:1:70:147:84': 0 -> 3 [bam_fillmd1] different NM for read 'EAS56_53:1:124:243:35': 2 -> 5 [bam_fillmd1] different NM for read 'EAS1_103:2:226:302:758': 2 -> 3 [bam_fillmd1] different NM for read 'EAS114_28:6:175:705:982': 1 -> 0 [bam_fillmd1] different NM for read 'EAS51_64:4:179:389:585': 7 -> 8 [bam_fillmd1] different NM for read 'B7_589:1:122:337:968': 3 -> 2 [bam_fillmd1] different NM for read 'B7_610:4:15:805:420': 4 -> 5 [bam_fillmd1] different NM for read 'B7_591:2:279:124:41': 2 -> 4 [bam_fillmd1] different NM for read 'EAS112_32:8:89:254:332': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:7:103:731:697': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_11:2:71:83:58': 0 -> 2 [bam_fillmd1] different NM for read 'EAS192_3:4:63:5:870': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:29:1822:1881': 0 -> 2 [bam_fillmd1] different NM for read 'EAS188_7:3:15:568:42': 2 -> 1 [bam_fillmd1] different NM for read 'EAS1_95:4:176:971:874': 0 -> 1 [bam_fillmd1] different NM for read 'EAS1_99:1:34:649:318': 3 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:4:61:346:384': 3 -> 4 [bam_fillmd1] different NM for read 'B7_597:6:20:592:496': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:4:38:999:463': 2 -> 1 [bam_fillmd1] different NM for read 'EAS114_28:5:23:944:377': 0 -> 3 [bam_fillmd1] different NM for read 'EAS219_1:3:90:219:528': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_108:5:89:942:84': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:6:159:493:275': 0 -> 5 [bam_fillmd1] different NM for read 'EAS139_11:1:81:1019:558': 0 -> 5 [bam_fillmd1] different NM for read 'EAS51_62:7:162:195:761': 0 -> 4 [bam_fillmd1] different NM for read 'B7_597:3:115:646:430': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:243:209:110': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:2:266:994:429': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:5:32:461:154': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:6:7:492:1088': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_95:6:174:650:125': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:6:89:457:591': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_39:2:38:670:564': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_7:4:92:693:228': 1 -> 6 [bam_fillmd1] different NM for read 'EAS218_1:4:61:1369:440': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_26:4:123:1001:580': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:4:10:1312:1558': 0 -> 4 [bam_fillmd1] different NM for read 'EAS220_1:8:45:178:1321': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:5:125:137:58': 0 -> 4 [bam_fillmd1] different NM for read 'EAS192_3:3:285:349:797': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_45:5:56:1757:1319': 0 -> 4 [bam_fillmd1] different NM for read 'B7_591:3:291:404:199': 0 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:7:159:253:353': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_57:1:122:38:103': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_4:5:103:870:105': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:8:24:718:322': 3 -> 7 [bam_fillmd1] different NM for read 'EAS51_64:6:118:41:489': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_61:3:165:665:220': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:238:803:383': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:3:232:364:583': 0 -> 3 [bam_fillmd1] different NM for read 'B7_595:2:29:729:70': 3 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:220:809:850': 4 -> 6 [bam_fillmd1] different NM for read 'EAS54_65:2:264:157:150': 3 -> 5 [bam_fillmd1] different NM for read 'B7_595:8:26:242:35': 2 -> 1 [bam_fillmd1] different NM for read 'B7_610:7:34:144:868': 4 -> 5 [bam_fillmd1] different NM for read 'B7_597:8:147:360:141': 1 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:82:154:1333': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_63:3:41:468:459': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_97:4:274:287:423': 0 -> 1 [bam_fillmd1] different NM for read 'EAS114_30:2:303:428:326': 0 -> 1 [bam_fillmd1] different NM for read 'EAS54_71:8:105:854:975': 0 -> 3 gunzip < with_md.sam.gz > with_md.sam samtools view --no-PG -bo with_md.bam with_md.sam [W::bam_hdr_read] EOF marker is absent. The input is probably truncated samtools index with_md.bam samtools view --no-PG -bu -o uncompressed.bam ex2.sam samtools view --no-PG -bo MM-chebi.bam MM-chebi.sam samtools view --no-PG -bo MM-double.bam MM-double.sam samtools view --no-PG -bo MM-explicit.bam MM-explicit.sam samtools view --no-PG -bo MM-multi.bam MM-multi.sam samtools view --no-PG -bo MM-orient.bam MM-orient.sam samtools view --no-PG -bo ex10.bam ex10.sam samtools view --no-PG -bo ex3.bam ex3.sam samtools view --no-PG -bo ex4.bam ex4.sam samtools view --no-PG -bo ex5.bam ex5.sam samtools view --no-PG -bo ex6.bam ex6.sam samtools view --no-PG -bo ex8.bam ex8.sam samtools view --no-PG -bo ex9_fail.bam ex9_fail.sam samtools view --no-PG -bo ex9_nofail.bam ex9_nofail.sam samtools view --no-PG -bo ex_spliced.bam ex_spliced.sam samtools view --no-PG -bo example_aligned_pairs.bam example_aligned_pairs.sam samtools view --no-PG -bo example_btag.bam example_btag.sam samtools view --no-PG -bo example_dash_in_chr.bam example_dash_in_chr.sam samtools view --no-PG -bo example_empty_header.bam example_empty_header.sam samtools view --no-PG -bo example_empty_with_header.bam example_empty_with_header.sam samtools view --no-PG -bo example_reverse_complement.bam example_reverse_complement.sam touch tmp.list samtools view --no-PG -bo example_unmapped_reads_no_sq.bam -t tmp.list example_unmapped_reads_no_sq.sam rm -f tmp.list samtools view --no-PG -bo issue100.bam issue100.sam samtools view --no-PG -bo rg_with_tab.bam rg_with_tab.sam samtools view --no-PG -bo softclip.bam softclip.sam samtools view --no-PG -bo tag_bug.bam tag_bug.sam samtools view --no-PG -bo test_mapped_unmapped.bam test_mapped_unmapped.sam samtools view --no-PG -bo test_query_position.bam test_query_position.sam samtools view --no-PG -bo test_unaligned.bam test_unaligned.sam samtools index MM-chebi.bam samtools index MM-double.bam samtools index MM-explicit.bam samtools index MM-multi.bam samtools index MM-orient.bam samtools index ex10.bam samtools index ex3.bam samtools index ex4.bam samtools index ex5.bam samtools index ex6.bam samtools index ex8.bam samtools index ex9_fail.bam samtools index ex9_nofail.bam samtools index ex_spliced.bam samtools index example_aligned_pairs.bam samtools index example_btag.bam samtools index example_dash_in_chr.bam samtools index example_empty_header.bam samtools index example_empty_with_header.bam samtools index example_reverse_complement.bam samtools index example_unmapped_reads_no_sq.bam samtools index issue100.bam samtools index rg_with_tab.bam samtools index softclip.bam samtools index tag_bug.bam samtools index test_mapped_unmapped.bam samtools index test_query_position.bam samtools index test_unaligned.bam samtools view --no-PG -Co ex1.cram -T ex1.fa ex1.sam samtools view --no-PG -Co ex2.cram -T ex1.fa ex2.sam samtools view --no-PG -Co ex3.cram -T ex1.fa ex3.sam samtools index ex1.cram samtools index ex2.cram samtools index ex3.cram cp ex1.bam example_bai.bam samtools index example_bai.bam mv example_bai.bam.bai example_bai.bai dd if=ex2.bam of=ex2_truncated.bam bs=$((`wc -c < ex2.bam`-512)) count=1 1+0 records in 1+0 records out 122288 bytes (122 kB, 119 KiB) copied, 0.000322883 s, 379 MB/s (bgzip -d < ex2.bam; printf '\37\0\0\0\1\0\0\0') | bgzip > ex2_corrupt.bam grep "^@" ex2.sam | samtools view --no-PG -bo empty.bam - samtools index empty.bam cp ex1.bam explicit_index.bam cp ex1.cram explicit_index.cram gzip < faidx_empty_seq.fq > faidx_empty_seq.fq.gz bgzip < ex1.fa > ex1.fa.gz samtools faidx ex1.fa.gz cp ex1.bam ex1_csi.bam samtools index -c ex1_csi.bam touch all.stamp rm with_md.sam make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' bgzip < example_vcf40.vcf > example_vcf40.vcf.gz tabix -f -p vcf example_vcf40.vcf.gz # create tbi index bcftools index -f example_vcf40.vcf.gz # create csi index bgzip < example_vcf42.vcf > example_vcf42.vcf.gz tabix -f -p vcf example_vcf42.vcf.gz # create tbi index bcftools index -f example_vcf42.vcf.gz # create csi index bgzip < example_vcf42_only_header.vcf > example_vcf42_only_header.vcf.gz tabix -f -p vcf example_vcf42_only_header.vcf.gz # create tbi index bcftools index -f example_vcf42_only_header.vcf.gz # create csi index bgzip < example_vcf42_withcontigs.vcf > example_vcf42_withcontigs.vcf.gz tabix -f -p vcf example_vcf42_withcontigs.vcf.gz # create tbi index bcftools index -f example_vcf42_withcontigs.vcf.gz # create csi index bgzip < example_vcf43.vcf > example_vcf43.vcf.gz tabix -f -p vcf example_vcf43.vcf.gz # create tbi index bcftools index -f example_vcf43.vcf.gz # create csi index bgzip < example_vcf43_with_utf8.vcf > example_vcf43_with_utf8.vcf.gz tabix -f -p vcf example_vcf43_with_utf8.vcf.gz # create tbi index bcftools index -f example_vcf43_with_utf8.vcf.gz # create csi index bgzip < gnomad.vcf > gnomad.vcf.gz tabix -f -p vcf gnomad.vcf.gz # create tbi index bcftools index -f gnomad.vcf.gz # create csi index bgzip < gnomad_fixed.vcf > gnomad_fixed.vcf.gz tabix -f -p vcf gnomad_fixed.vcf.gz # create tbi index bcftools index -f gnomad_fixed.vcf.gz # create csi index bgzip < missing_genotypes.vcf > missing_genotypes.vcf.gz tabix -f -p vcf missing_genotypes.vcf.gz # create tbi index bcftools index -f missing_genotypes.vcf.gz # create csi index bcftools view -O b example_vcf40.vcf.gz -o example_vcf40.bcf bcftools index -f example_vcf40.bcf bcftools view -O b example_vcf42.vcf.gz -o example_vcf42.bcf bcftools index -f example_vcf42.bcf bcftools view -O b example_vcf42_only_header.vcf.gz -o example_vcf42_only_header.bcf bcftools index -f example_vcf42_only_header.bcf bcftools view -O b example_vcf42_withcontigs.vcf.gz -o example_vcf42_withcontigs.bcf bcftools index -f example_vcf42_withcontigs.bcf bcftools view -O b example_vcf43.vcf.gz -o example_vcf43.bcf bcftools index -f example_vcf43.bcf bcftools view -O b example_vcf43_with_utf8.vcf.gz -o example_vcf43_with_utf8.bcf bcftools index -f example_vcf43_with_utf8.bcf bcftools view -O b gnomad.vcf.gz -o gnomad.bcf bcftools index -f gnomad.bcf bcftools view -O b gnomad_fixed.vcf.gz -o gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools index -f gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools view -O b missing_genotypes.vcf.gz -o missing_genotypes.bcf bcftools index -f missing_genotypes.bcf touch all.stamp make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pysam-0.23.3+ds configfile: setup.cfg plugins: typeguard-4.4.4 collecting ... collected 975 items / 1 skipped tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQualStr PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testStrOfEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayB PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayI PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualList PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualTuple PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects1 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateTlen PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_mapped_reads_are_updated PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_unmapped_reads_ignore_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_equivalence_matches_only_and_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_1character_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_bad_type_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_hard_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_lowercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_match_mismatch PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_via_cigarstring PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip_reference PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_soft_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_uppercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_with_malformed_MD_tag PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_header_accessible PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_query_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_read_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_query_length_is_limited PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_equal PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestCigar::testCigar PASSED tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED tests/AlignedSegment_test.py::TestBaseModifications::testDouble PASSED tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED tests/AlignedSegment_test.py::TestBaseModifications::testMulti PASSED tests/AlignedSegment_test.py::TestBaseModifications::testOrient PASSED tests/AlignedSegment_test.py::TestTags::testAddTags PASSED tests/AlignedSegment_test.py::TestTags::testAddTagsType PASSED tests/AlignedSegment_test.py::TestTags::testArrayTags PASSED tests/AlignedSegment_test.py::TestTags::testEmptyTag PASSED tests/AlignedSegment_test.py::TestTags::testLongTags PASSED tests/AlignedSegment_test.py::TestTags::testMDTagComplex PASSED tests/AlignedSegment_test.py::TestTags::testMDTagDeletions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagInsertions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED tests/AlignedSegment_test.py::TestTags::testMDTagRefSkipping PASSED tests/AlignedSegment_test.py::TestTags::testMDTagSoftClipping PASSED tests/AlignedSegment_test.py::TestTags::testMissingTag PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegersWrittenToFile PASSED tests/AlignedSegment_test.py::TestTags::testSetTag PASSED tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED tests/AlignedSegment_test.py::TestCopy::testCopy PASSED tests/AlignedSegment_test.py::TestCopy::testDeepCopy PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_8ij6v6c7' PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575 [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_k072icc5' PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED tests/AlignmentFile_test.py::TestIO::testHead PASSED tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testCRAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges PASSED tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED tests/AlignmentFile_test.py::TestClipping::testClipping PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED tests/AlignmentFile_test.py::TestContextManager::testManager PASSED tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated [E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094 [E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes PASSED tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM [W::hts_idx_load3] The index file is older than the data file: /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/pysam_data/ex1.bam.bai PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory PASSED tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED tests/VariantFile_test.py::TestHeader::testIterator PASSED tests/VariantFile_test.py::TestHeader::testStr PASSED tests/VariantFile_test.py::TestParsing::testAlleles PASSED tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED tests/VariantFile_test.py::TestParsing::testAlt PASSED tests/VariantFile_test.py::TestParsing::testChrom PASSED tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED tests/VariantFile_test.py::TestParsing::testFilter PASSED tests/VariantFile_test.py::TestParsing::testFormat PASSED tests/VariantFile_test.py::TestParsing::testId PASSED tests/VariantFile_test.py::TestParsing::testInfo PASSED tests/VariantFile_test.py::TestParsing::testPos PASSED tests/VariantFile_test.py::TestParsing::testQual PASSED tests/VariantFile_test.py::TestParsing::testRef PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED tests/VariantFile_test.py::TestParsing::testStart PASSED tests/VariantFile_test.py::TestParsing::testStop PASSED tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) (0, 0) PASSED tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_itm99e4g.bcf' PASSED tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_set_sample_alleles PASSED tests/VariantRecord_test.py::test_repeated_new_record PASSED tests/compile_test.py::test_bam PASSED tests/compile_test.py::test_gtf PASSED tests/compile_test.py::TestBinaryCompatibility::test_alignments SKIPPED tests/compile_test.py::TestBinaryCompatibility::test_variants SKIPPED tests/faidx_test.py::TestFastaFile::testFetch PASSED tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED tests/faidx_test.py::TestFastaFile::testLength PASSED tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED tests/faidx_test.py::TestFastxFileFastq::testManager PASSED tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED tests/faidx_test.py::TestFastqFileFastq::testManager PASSED tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED tests/faidx_test.py::TestFastxFileFasta::testManager PASSED tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED tests/samtools_test.py::SamtoolsTest::testStatements PASSED tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...) tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingBCFtools [E::hts_open_format] Failed to open file "nonexistent.vcf" : No such file or directory PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingSamtools [E::hts_open_format] Failed to open file "nonexistent.bam" : No such file or directory PASSED tests/samtools_test.py::TestReturnType::testReturnValueData PASSED tests/samtools_test.py::TestReturnType::testReturnValueString PASSED tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED tests/samtools_test.py::StdoutTest::testSaveStdout PASSED tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED tests/samtools_test.py::PysamTest::testStatements PASSED tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...) tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED tests/tabix_test.py::TestCompression::testCompression PASSED tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionSam::testCompression PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionBed::testCompression PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionVCF::testCompression PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestGZFile::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED tests/tabix_test.py::TestIterationWithComments::testAll PASSED tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithComments::testHeader PASSED tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithComments::testReopening PASSED tests/tabix_test.py::TestIterators::testClosedFile PASSED tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED tests/tabix_test.py::TestIterators::testIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED tests/tabix_test.py::TestBed::testRead PASSED tests/tabix_test.py::TestBed::testWrite PASSED tests/tabix_test.py::TestUnicode::testFromTabix PASSED tests/tabix_test.py::TestUnicode::testFromVCF PASSED tests/tabix_test.py::TestVCFFromTabix::testRead PASSED tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting [W::bcf_hdr_check_sanity] GL should be declared as Number=G PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs: #CHROM POS ID REF ALT QUAL FILTER INFO PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED tests/tabix_test.py::TestMultipleIterators::testScope PASSED tests/tabix_test.py::TestContextManager::testManager PASSED tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testCopy PASSED tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestParser::testRead PASSED tests/tabixproxies_test.py::TestParser::testUnset PASSED tests/tabixproxies_test.py::TestParser::testWrite PASSED tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGTF::testCopy PASSED tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGTF::testRead PASSED tests/tabixproxies_test.py::TestGTF::testUnset PASSED tests/tabixproxies_test.py::TestGTF::testWrite PASSED tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGFF3::testCopy PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGFF3::testRead PASSED tests/tabixproxies_test.py::TestGFF3::testUnset PASSED tests/tabixproxies_test.py::TestGFF3::testWrite PASSED tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED tests/test_samtools_python.py::test_bedcov_split_lines PASSED tests/test_samtools_python.py::test_idxstats_parse PASSED tests/test_samtools_python.py::test_bedcov PASSED =============================== warnings summary =============================== .pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py::SamtoolsTest::testStatements .pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py::PysamTest::testStatements /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py:138: UserWarning: versions of pysam.samtools and samtools differ: 1.21 != 1.22.1 warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 962 passed, 14 skipped, 2 warnings in 27.85s ================= make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext checking for arm-linux-gnueabihf-gcc option to enable C99 features... arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c pysam/conftest_cstd.c -o build/temp.linux-armv7l-cpython-313/pysam/conftest_cstd.o arm-linux-gnueabihf-gcc option to enable C99 features: none needed creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension running install_lib creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/Pileup.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/bcftools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/config.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/samtools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/Pileup.py to Pileup.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/bcftools.py to bcftools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/config.py to config.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/samtools.py to samtools.cpython-313.pyc running install_egg_info Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam-0.23.3.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' cd tests/pysam_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh_install -Xtest.gtf.gz find debian -name log.txt -delete find debian -name LICENSE -delete make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcalignedsegment.cpython-313-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 1200652 new size 1203831 dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-313-arm-linux-gnueabihf.so: DWARF compression not beneficial - old size 1931954 new size 1965250 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-pysam' in '../python3-pysam_0.23.3+ds-2_armhf.deb'. dpkg-deb: building package 'python3-pysam-dbgsym' in '../python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb'. dpkg-genbuildinfo --build=any -O../python-pysam_0.23.3+ds-2_armhf.buildinfo dpkg-genchanges --build=any -O../python-pysam_0.23.3+ds-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-11-28T16:37:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 28 Nov 2025 16:37:49 +0000 | +------------------------------------------------------------------------------+ python-pysam_0.23.3+ds-2_armhf.changes: --------------------------------------- Format: 1.8 Date: Fri, 14 Nov 2025 14:10:45 +0100 Source: python-pysam Binary: python3-pysam python3-pysam-dbgsym Architecture: armhf Version: 0.23.3+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Changes: python-pysam (0.23.3+ds-2) unstable; urgency=medium . * skip-test-on-32-bit.patch: skip further tests. Checksums-Sha1: 068dcfa6a699e67188fc163c4a75ce0904ff0154 8089 python-pysam_0.23.3+ds-2_armhf.buildinfo 0196e610abd16323c5c25ed849e54c01cbd6535e 10055108 python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb 127ae376c80a0e779c094cf4186c33ed9535a588 3432248 python3-pysam_0.23.3+ds-2_armhf.deb Checksums-Sha256: 01fcc2526cae55dccd8489d3ca4aef33e3978efe498d4fdba75243f5c3bab197 8089 python-pysam_0.23.3+ds-2_armhf.buildinfo 203db614252ed8ff1d2a3e6542319d7d6bdc09a213adf4ec4b5e4ede2bf1699a 10055108 python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb d3c1d47a24ce9438c778fe91a198d69fc56fce2d330942b93e66813765caab22 3432248 python3-pysam_0.23.3+ds-2_armhf.deb Files: c9d5dffd49c16eaef3a07efaf71f8661 8089 python optional python-pysam_0.23.3+ds-2_armhf.buildinfo 7d7caf05d45fbbdf8a9a6f09b2916fa9 10055108 debug optional python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb a25ec3e61c571b7b5047d324f945f790 3432248 python optional python3-pysam_0.23.3+ds-2_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 28 Nov 2025 16:37:49 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-pysam Binary: python3-pysam python3-pysam-dbgsym Architecture: armhf Version: 0.23.3+ds-2 Checksums-Md5: 7d7caf05d45fbbdf8a9a6f09b2916fa9 10055108 python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb a25ec3e61c571b7b5047d324f945f790 3432248 python3-pysam_0.23.3+ds-2_armhf.deb Checksums-Sha1: 0196e610abd16323c5c25ed849e54c01cbd6535e 10055108 python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb 127ae376c80a0e779c094cf4186c33ed9535a588 3432248 python3-pysam_0.23.3+ds-2_armhf.deb Checksums-Sha256: 203db614252ed8ff1d2a3e6542319d7d6bdc09a213adf4ec4b5e4ede2bf1699a 10055108 python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb d3c1d47a24ce9438c778fe91a198d69fc56fce2d330942b93e66813765caab22 3432248 python3-pysam_0.23.3+ds-2_armhf.deb Build-Origin: Debian Build-Architecture: armhf Build-Date: Fri, 28 Nov 2025 16:37:47 +0000 Build-Path: /build/reproducible-path/python-pysam-0.23.3+ds Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), bcftools (= 1.22-1), binutils (= 2.45-8), binutils-arm-linux-gnueabihf (= 2.45-8), binutils-common (= 2.45-8), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-3+b3), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-8), cpp-15-arm-linux-gnueabihf (= 15.2.0-8), cpp-arm-linux-gnueabihf (= 4:15.2.0-4), cython3 (= 3.1.6+dfsg-2), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-python (= 6.20250414), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-8), g++-15-arm-linux-gnueabihf (= 15.2.0-8), g++-arm-linux-gnueabihf (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-8), gcc-15-arm-linux-gnueabihf (= 15.2.0-8), gcc-15-base (= 15.2.0-8), gcc-arm-linux-gnueabihf (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-8), libatomic1 (= 15.2.0-8), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-8), libblkid1 (= 2.41.2-4), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-8), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.5.1-1), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45-8), libctf0 (= 2.45-8), libcurl3t64-gnutls (= 8.17.0-2), libcurl4-gnutls-dev (= 8.17.0-2), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.281), libdebhelper-perl (= 13.28), libdeflate-dev (= 1.23-2), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.194-1), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.3-1), libexpat1-dev (= 2.7.3-1), libffi8 (= 3.5.2-2), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-8), libgcc-s1 (= 15.2.0-8), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgmp-dev (= 2:6.3.0+dfsg-5), libgmp10 (= 2:6.3.0+dfsg-5), libgmpxx4ldbl (= 2:6.3.0+dfsg-5), libgnutls-dane0t64 (= 3.8.10-3), libgnutls-openssl27t64 (= 3.8.10-3), libgnutls28-dev (= 3.8.10-3), libgnutls30t64 (= 3.8.10-3), libgomp1 (= 15.2.0-8), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhogweed6t64 (= 3.10.2-1), libhts-dev (= 1.22.1+ds2-1), libhts3t64 (= 1.22.1+ds2-1), libhtscodecs2 (= 1.6.1-2), libidn2-0 (= 2.3.8-4), libidn2-dev (= 2.3.8-4), libisl23 (= 0.27-1), libjansson4 (= 2.14-2+b3), libjs-sphinxdoc (= 8.2.3-8), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), libldap-dev (= 2.6.10+dfsg-1), libldap2 (= 2.6.10+dfsg-1), liblzma-dev (= 5.8.1-2), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncurses6 (= 6.5+20250216-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp2-dev (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-gnutls-dev (= 1.16.0-1), libngtcp2-crypto-gnutls8 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libp11-kit-dev (= 0.25.9-2), libp11-kit0 (= 0.25.9-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-all-dev (= 3.13.7-1), libpython3-dev (= 3.13.7-1), libpython3-stdlib (= 3.13.7-1), libpython3.13 (= 3.13.9-1), libpython3.13-dev (= 3.13.9-1), libpython3.13-minimal (= 3.13.9-1), libpython3.13-stdlib (= 3.13.9-1), libreadline8t64 (= 8.3-3), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.9-2), libsframe2 (= 2.45-8), libsmartcols1 (= 2.41.2-4), libsqlite3-0 (= 3.46.1-8), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.4-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-8), libstdc++6 (= 15.2.0-8), libsystemd0 (= 258.1-2), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-7), libubsan1 (= 15.2.0-8), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-2), libunbound8 (= 1.24.1-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libxml2-16 (= 2.15.1+dfsg-0.3), libzstd-dev (= 1.5.7+dfsg-2), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.17.7-2), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 14.0.0), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), nettle-dev (= 3.10.2-1), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.7-1), python3-all (= 3.13.7-1), python3-all-dev (= 3.13.7-1), python3-autocommand (= 2.2.2-3), python3-dev (= 3.13.7-1), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-1), python3-jaraco.context (= 6.0.1-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.7-1), python3-more-itertools (= 10.8.0-1), python3-packaging (= 25.0-1), python3-pkg-resources (= 78.1.1-0.1), python3-pluggy (= 1.6.0-1), python3-pygments (= 2.18.0+dfsg-2), python3-pytest (= 8.4.2-1), python3-setuptools (= 78.1.1-0.1), python3-typeguard (= 4.4.4-1), python3-typing-extensions (= 4.15.0-1), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.9-1), python3.13-dev (= 3.13.9-1), python3.13-minimal (= 3.13.9-1), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1), samtools (= 1.22.1-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-5), tabix (= 1.22.1+ds2-1), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-5), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1763125845" +------------------------------------------------------------------------------+ | Package contents Fri, 28 Nov 2025 16:37:50 +0000 | +------------------------------------------------------------------------------+ python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb ------------------------------------------ new Debian package, version 2.0. size 10055108 bytes: control archive=1196 bytes. 895 bytes, 12 lines control 1471 bytes, 14 lines md5sums Package: python3-pysam-dbgsym Source: python-pysam Version: 0.23.3+ds-2 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 10597 Depends: python3-pysam (= 0.23.3+ds-2) Section: debug Priority: optional Description: debug symbols for python3-pysam Build-Ids: 34b07482339edafd0d7b3548836bfa94d43ee281 445d804d91cd1bb93b3ca4fe7fe9e8ccc756c7a1 5a48df2f8e4134af9f7c1450df1359e438a18c4a 62df9bdfc7715714addc999c80f5c1e5f3f2ec20 88514a4ad0e24f040ed85468b4d9790e9ec066d1 90613d1f47fb6fb0af7ee43a8d98276d9167955c 9d83d1e06af5df5e4b4e79d3b5403e1519794898 bbf234c6621fda0be8a47837ed8380bc6b20674d d219ff85b377da21f76b9195bd9a94cafbf9a5e5 d61ba8f3192dff37e2ed29f34c42a0a808d64388 d88901e7fa014bcc132a890b0ec68ba9fd9a39cc da437d250f5862947f14d8abf044f9515ec9c5c3 dc754f469c100cef71c0d29ffb4a5d8661c7c528 drwxr-xr-x root/root 0 2025-11-14 13:10 ./ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/34/ -rw-r--r-- root/root 1184408 2025-11-14 13:10 ./usr/lib/debug/.build-id/34/b07482339edafd0d7b3548836bfa94d43ee281.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 433544 2025-11-14 13:10 ./usr/lib/debug/.build-id/44/5d804d91cd1bb93b3ca4fe7fe9e8ccc756c7a1.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/5a/ -rw-r--r-- root/root 2207416 2025-11-14 13:10 ./usr/lib/debug/.build-id/5a/48df2f8e4134af9f7c1450df1359e438a18c4a.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/62/ -rw-r--r-- root/root 1415704 2025-11-14 13:10 ./usr/lib/debug/.build-id/62/df9bdfc7715714addc999c80f5c1e5f3f2ec20.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/88/ -rw-r--r-- root/root 993028 2025-11-14 13:10 ./usr/lib/debug/.build-id/88/514a4ad0e24f040ed85468b4d9790e9ec066d1.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/90/ -rw-r--r-- root/root 608852 2025-11-14 13:10 ./usr/lib/debug/.build-id/90/613d1f47fb6fb0af7ee43a8d98276d9167955c.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/9d/ -rw-r--r-- root/root 466712 2025-11-14 13:10 ./usr/lib/debug/.build-id/9d/83d1e06af5df5e4b4e79d3b5403e1519794898.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/bb/ -rw-r--r-- root/root 538920 2025-11-14 13:10 ./usr/lib/debug/.build-id/bb/f234c6621fda0be8a47837ed8380bc6b20674d.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/d2/ -rw-r--r-- root/root 274520 2025-11-14 13:10 ./usr/lib/debug/.build-id/d2/19ff85b377da21f76b9195bd9a94cafbf9a5e5.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/d6/ -rw-r--r-- root/root 975768 2025-11-14 13:10 ./usr/lib/debug/.build-id/d6/1ba8f3192dff37e2ed29f34c42a0a808d64388.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/d8/ -rw-r--r-- root/root 93668 2025-11-14 13:10 ./usr/lib/debug/.build-id/d8/8901e7fa014bcc132a890b0ec68ba9fd9a39cc.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/da/ -rw-r--r-- root/root 164144 2025-11-14 13:10 ./usr/lib/debug/.build-id/da/437d250f5862947f14d8abf044f9515ec9c5c3.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/dc/ -rw-r--r-- root/root 1421928 2025-11-14 13:10 ./usr/lib/debug/.build-id/dc/754f469c100cef71c0d29ffb4a5d8661c7c528.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 41020 2025-11-14 13:10 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-pysam.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-11-14 13:10 ./usr/share/doc/python3-pysam-dbgsym -> python3-pysam python3-pysam_0.23.3+ds-2_armhf.deb ----------------------------------- new Debian package, version 2.0. size 3432248 bytes: control archive=9288 bytes. 701 bytes, 16 lines control 35406 bytes, 361 lines md5sums 273 bytes, 12 lines * postinst #!/bin/sh 386 bytes, 12 lines * prerm #!/bin/sh Package: python3-pysam Source: python-pysam Version: 0.23.3+ds-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 34255 Depends: libc6 (>= 2.38), libhts3t64 (>= 1.22.1), zlib1g (>= 1:1.2.3.3), python3 (<< 3.14), python3 (>= 3.13~), python3:any Section: python Priority: optional Homepage: https://pysam.readthedocs.org/en/latest Description: interface for the SAM/BAM sequence alignment and mapping format (Python 3) Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. . This package installs the module for Python 3. drwxr-xr-x root/root 0 2025-11-14 13:10 ./ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/ -rw-r--r-- root/root 1668 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/dependency_links.txt -rw-r--r-- root/root 1 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/not-zip-safe -rw-r--r-- root/root 6 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/top_level.txt drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam/ -rw-r--r-- root/root 8955 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/Pileup.py -rw-r--r-- root/root 3431 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/__init__.py -rw-r--r-- root/root 1528 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/bcftools.py -rw-r--r-- root/root 102 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/cbcftools_util.h -rw-r--r-- root/root 16 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam/config.py -rw-r--r-- root/root 222 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/conftest_cstd.c -rw-r--r-- root/root 102 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/csamtools_util.h -rw-r--r-- root/root 3294 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/htslib_util.c -rw-r--r-- root/root 2565 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/htslib_util.h drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam/include/ -rw-r--r-- root/root 0 2025-06-10 10:37 ./usr/lib/python3/dist-packages/pysam/include/__init__.py drwxr-xr-x 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drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/doc/python3-pysam/ -rw-r--r-- root/root 2833 2025-11-14 13:10 ./usr/share/doc/python3-pysam/changelog.Debian.gz -rw-r--r-- root/root 3005 2025-11-14 13:10 ./usr/share/doc/python3-pysam/copyright drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 211 2025-11-14 13:10 ./usr/share/lintian/overrides/python3-pysam +------------------------------------------------------------------------------+ | Post Build Fri, 28 Nov 2025 16:37:51 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 28 Nov 2025 16:37:51 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 28 Nov 2025 16:37:53 +0000 | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 202540 Build-Time: 361 Distribution: unstable Host Architecture: armhf Install-Time: 5 Job: /srv/rebuilderd/tmp/rebuilderdmyJOJf/inputs/python-pysam_0.23.3+ds-2.dsc Machine Architecture: arm64 Package: python-pysam Package-Time: 378 Source-Version: 0.23.3+ds-2 Space: 202540 Status: successful Version: 0.23.3+ds-2 -------------------------------------------------------------------------------- Finished at 2025-11-28T16:37:48Z Build needed 00:06:18, 202540k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdmyJOJf/out checking python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb: size differs for python3-pysam-dbgsym_0.23.3+ds-2_armhf.deb