=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdp2CGoQ/inputs/python-pysam_0.23.0+ds-1+b1_i386.buildinfo Source: python-pysam Version: 0.23.0+ds-1 rebuilderd-worker node: infom08-amd64 +------------------------------------------------------------------------------+ | Downloading sources Wed, 23 Jul 2025 21:41:58 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [168 kB] Get:2 https://deb.debian.org/debian sid InRelease [213 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 2s (12.0 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds-1.dsc' python-pysam_0.23.0+ds-1.dsc 2441 SHA256:6f03755627321ef54c141a0a6ea4fb8d3b9816c75052fbbc133a185a4f847f09 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds.orig.tar.xz' python-pysam_0.23.0+ds.orig.tar.xz 1519052 SHA256:c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds-1.debian.tar.xz' python-pysam_0.23.0+ds-1.debian.tar.xz 10632 SHA256:9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440 c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd python-pysam_0.23.0+ds.orig.tar.xz 9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440 python-pysam_0.23.0+ds-1.debian.tar.xz 6f03755627321ef54c141a0a6ea4fb8d3b9816c75052fbbc133a185a4f847f09 python-pysam_0.23.0+ds-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Wed, 23 Jul 2025 21:42:00 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdp2CGoQ/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdp2CGoQ/inputs/python-pysam_0.23.0+ds-1+b1_i386.buildinfo Rebuilding python-pysam=0.23.0+ds-1 in /srv/rebuilderd/tmp/rebuilderdp2CGoQ/inputs now. /srv/rebuilderd/tmp/rebuilderdp2CGoQ/inputs/python-pysam_0.23.0+ds-1+b1_i386.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/python-pysam-0.23.0+ds I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid InRelease [205 kB] Get:2 http://snapshot.debian.org/archive/debian/20250304T145039Z sid InRelease [205 kB] Get:3 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 Packages [9856 kB] Get:4 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 Packages [9846 kB] Fetched 20.1 MB in 1s (14.0 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250224T085051Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20250304T145039Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Fetched 51.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_p0aqmv3/libtasn1-6_4.20.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdeflate-dev i386 1.23-1+b1 [57.5 kB] Fetched 57.5 kB in 0s (2327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp86z6uo1m/libdeflate-dev_1.23-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 binutils-common i386 2.44-2 [2508 kB] Fetched 2508 kB in 0s (151 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa2r4x2jl/binutils-common_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 liblzma-dev i386 5.6.3-1+b1 [328 kB] Fetched 328 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj2z_6xkj/liblzma-dev_5.6.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libncursesw6 i386 6.5+20250216-1 [148 kB] Fetched 148 kB in 0s (4925 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp26_wppqp/libncursesw6_6.5+20250216-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libtasn1-6-dev i386 4.20.0-2 [103 kB] Fetched 103 kB in 0s (1488 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_vlla4qy/libtasn1-6-dev_4.20.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 media-types all 12.0.0 [28.9 kB] Fetched 28.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph9rmqtd3/media-types_12.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 perl i386 5.40.1-2 [267 kB] Fetched 267 kB in 0s (5181 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4pmkam0_/perl_5.40.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libubsan1 i386 14.2.0-17 [1055 kB] Fetched 1055 kB in 0s (81.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd8t8jtf3/libubsan1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgdbm-compat4t64 i386 1.24-2 [50.8 kB] Fetched 50.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpltca0cg4/libgdbm-compat4t64_1.24-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdebconfclient0 i386 0.277 [10.4 kB] Fetched 10.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmy56nkxl/libdebconfclient0_0.277_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpcre2-8-0 i386 10.45-1 [295 kB] Fetched 295 kB in 0s (23.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqanfr0va/libpcre2-8-0_10.45-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libitm1 i386 14.2.0-17 [27.3 kB] Fetched 27.3 kB in 0s (2603 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxiepg016/libitm1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbz2-1.0 i386 1.0.8-6 [38.1 kB] Fetched 38.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7mtppoxe/libbz2-1.0_1.0.8-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Fetched 83.7 kB in 0s (1673 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3dz7y0kp/libk5crypto3_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 groff-base i386 1.23.0-7 [1199 kB] Fetched 1199 kB in 0s (24.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_kz45_ph/groff-base_1.23.0-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnettle8t64 i386 3.10.1-1 [318 kB] Fetched 318 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi2mypfjb/libnettle8t64_3.10.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 base-passwd i386 3.6.6 [53.7 kB] Fetched 53.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm656kktj/base-passwd_3.6.6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 g++-14-i686-linux-gnu i386 14.2.0-17 [13.0 MB] Fetched 13.0 MB in 0s (245 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqc1n10wv/g++-14-i686-linux-gnu_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB] Fetched 195 kB in 0s (8234 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdjtbu6cr/libevent-2.1-7t64_2.1.12-stable-10+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (377 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph2fg_bb2/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcrypt1 i386 1:4.4.38-1 [95.7 kB] Fetched 95.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_i386.deb' to '/srv/rebuilderd/tmp/tmpjphpqvxn/libcrypt1_4.4.38-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgcc-s1 i386 14.2.0-17 [88.2 kB] Fetched 88.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkskqy7_x/libgcc-s1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Fetched 314 kB in 0s (4130 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3+b1_i386.deb' to '/srv/rebuilderd/tmp/tmp0fm49mr_/libmagic-mgc_5.45-3+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libquadmath0 i386 14.2.0-17 [231 kB] Fetched 231 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2n5s5if1/libquadmath0_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Fetched 115 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3+b1_i386.deb' to '/srv/rebuilderd/tmp/tmpucvw_0uq/libmagic1t64_5.45-3+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-packaging all 24.2-1 [55.3 kB] Fetched 55.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgkvljl42/python3-packaging_24.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pytest all 8.3.4-1 [250 kB] Fetched 250 kB in 0s (14.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqygp4l53/python3-pytest_8.3.4-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (1561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfovc9dc_/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 man-db i386 2.13.0-1 [1428 kB] Fetched 1428 kB in 0s (29.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp09d043gj/man-db_2.13.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cpp i386 4:14.2.0-1 [1564 B] Fetched 1564 B in 0s (19.6 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp974mhton/cpp_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libtinfo6 i386 6.5+20250216-1 [350 kB] Fetched 350 kB in 0s (6436 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_95kkoym/libtinfo6_6.5+20250216-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libc6 i386 2.40-7 [2685 kB] Fetched 2685 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnssfdshv/libc6_2.40-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libc-bin i386 2.40-7 [653 kB] Fetched 653 kB in 0s (35.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz5yy55ac/libc-bin_2.40-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp86zmeig0/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 automake all 1:1.17-3 [862 kB] Fetched 862 kB in 0s (67.8 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-3_all.deb' to '/srv/rebuilderd/tmp/tmp9c8hwbub/automake_1.17-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Fetched 26.9 kB in 0s (295 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptcxwfg21/python3-pluggy_1.5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libcurl3t64-gnutls i386 8.12.1-3 [411 kB] Fetched 411 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkcrdffww/libcurl3t64-gnutls_8.12.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Fetched 308 kB in 0s (23.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_bbg7i0s/libbrotli1_1.1.0-2+b6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gettext-base i386 0.23.1-1 [245 kB] Fetched 245 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcr5itp0j/gettext-base_0.23.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libcurl4-gnutls-dev i386 8.12.1-3 [542 kB] Fetched 542 kB in 0s (18.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4hgksvm8/libcurl4-gnutls-dev_8.12.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Fetched 62.4 kB in 0s (2468 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp7t02m4d/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dash i386 0.5.12-12 [103 kB] Fetched 103 kB in 0s (3174 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpazlk9j9b/dash_0.5.12-12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libselinux1 i386 3.8-3 [88.0 kB] Fetched 88.0 kB in 0s (2911 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23080nk8/libselinux1_3.8-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3-all-dev i386 3.13.2-1 [1068 B] Fetched 1068 B in 0s (59.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp76hu2pvn/python3-all-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB] Fetched 78.4 kB in 0s (2319 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp29sb4cct/libpsl-dev_0.21.2-1.1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Fetched 35.0 kB in 0s (570 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5uozhpn/libkrb5support0_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (659 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp16x0n07k/python3-inflect_7.3.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Fetched 6396 B in 0s (121 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7w5q0hpl/python3-iniconfig_1.1.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 comerr-dev i386 2.1-1.47.2-1 [56.2 kB] Fetched 56.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbrpg1yep/comerr-dev_2.1-1.47.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 util-linux i386 2.40.4-5 [1237 kB] Fetched 1237 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9vzcgvsh/util-linux_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 samtools i386 1.21-1 [700 kB] Fetched 700 kB in 0s (23.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn31z4jbx/samtools_1.21-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 krb5-multidev i386 1.21.3-4 [126 kB] Fetched 126 kB in 0s (1494 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpunaqxrau/krb5-multidev_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Fetched 57.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp56unjdfu/libpsl5t64_0.21.2-1.1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnelr4kjs/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc-i686-linux-gnu i386 4:14.2.0-1 [1428 B] Fetched 1428 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmpj4auusa7/gcc-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 sysvinit-utils i386 3.14-1 [33.9 kB] Fetched 33.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7p8qbiel/sysvinit-utils_3.14-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Fetched 423 kB in 0s (22.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp3lnttmj/libp11-kit0_0.25.5-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 bsdutils i386 1:2.40.4-5 [112 kB] Fetched 112 kB in 0s (1361 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.40.4-5_i386.deb' to '/srv/rebuilderd/tmp/tmpibpeo9bx/bsdutils_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Fetched 37.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprce9ve7a/python3-typeguard_4.4.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgnutls-openssl27t64 i386 3.8.9-2 [453 kB] Fetched 453 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpunz95qnc/libgnutls-openssl27t64_3.8.9-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 g++-14 i386 14.2.0-17 [22.1 kB] Fetched 22.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp44lk1eim/g++-14_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 liblzma5 i386 5.6.3-1+b1 [282 kB] Fetched 282 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2b6mba21/liblzma5_5.6.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Fetched 26.2 kB in 0s (335 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2zq0q7ef/pkgconf_1.8.1-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 bcftools i386 1.21-1 [829 kB] Fetched 829 kB in 0s (66.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjboo890p/bcftools_1.21-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 diffutils i386 1:3.10-2 [391 kB] Fetched 391 kB in 0s (14.4 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-2_i386.deb' to '/srv/rebuilderd/tmp/tmp2zka91b4/diffutils_3.10-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Fetched 256 kB in 0s (4694 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpirpdg2co/libssh2-1t64_1.11.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Fetched 9600 B in 0s (507 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprohrrhfy/libkeyutils1_1.6.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsasl2-2 i386 2.1.28+dfsg1-8+b1 [61.3 kB] Fetched 61.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjo2fwhcj/libsasl2-2_2.1.28+dfsg1-8+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnghttp3-dev i386 1.6.0-2 [101 kB] Fetched 101 kB in 0s (2398 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw7ks9dcs/libnghttp3-dev_1.6.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 nettle-dev i386 3.10.1-1 [1335 kB] Fetched 1335 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9e83y9un/nettle-dev_3.10.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libc-dev-bin i386 2.40-7 [57.2 kB] Fetched 57.2 kB in 0s (563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wnlfnic/libc-dev-bin_2.40-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB] Fetched 123 kB in 0s (3912 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuf75dk5k/libnghttp2-dev_1.64.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Fetched 1985 kB in 0s (36.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnilitav4/libpython3.13-stdlib_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3.13 i386 3.13.2-1 [745 kB] Fetched 745 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmgd7ndm9/python3.13_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB] Fetched 72.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ftf8dag/librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB] Fetched 19.1 kB in 0s (218 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp619eyudy/libngtcp2-crypto-gnutls8_1.9.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Fetched 354 kB in 0s (8595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzr74ync_/libkrb5-3_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dpkg i386 1.22.15 [1563 kB] Fetched 1563 kB in 0s (62.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6thtna_v/dpkg_1.22.15_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libzstd-dev i386 1.5.6+dfsg-2 [354 kB] Fetched 354 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplsewd4mo/libzstd-dev_1.5.6+dfsg-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 tzdata all 2025a-2 [259 kB] Fetched 259 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx9_wx8c5/tzdata_2025a-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpz9rudtdp/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkrb5-dev i386 1.21.3-4 [15.9 kB] Fetched 15.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbs3navzx/libkrb5-dev_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB] Fetched 48.4 kB in 0s (1150 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzn4ew3o/libdeflate0_1.23-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libisl23 i386 0.27-1 [747 kB] Fetched 747 kB in 0s (65.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkhwj5i8l/libisl23_0.27-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm23btz7l/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libpython3-dev i386 3.13.2-1 [10.3 kB] Fetched 10.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpja3snfyo/libpython3-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 build-essential i386 12.12 [4620 B] Fetched 4620 B in 0s (104 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2pkclxa4/build-essential_12.12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 coreutils i386 9.5-1 [2990 kB] Fetched 2990 kB in 0s (163 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvx1oxbu1/coreutils_9.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libpython3-stdlib i386 3.13.2-1 [10.0 kB] Fetched 10.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn220cgxp/libpython3-stdlib_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsystemd0 i386 257.3-1 [482 kB] Fetched 482 kB in 0s (47.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmc261d1x/libsystemd0_257.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 perl-modules-5.40 all 5.40.1-2 [3017 kB] Fetched 3017 kB in 0s (147 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpopglkc65/perl-modules-5.40_5.40.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dh-python all 6.20250108 [113 kB] Fetched 113 kB in 0s (2823 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwf5xefzp/dh-python_6.20250108_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbinutils i386 2.44-2 [593 kB] Fetched 593 kB in 0s (7430 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgr_nclo0/libbinutils_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libncurses6 i386 6.5+20250216-1 [112 kB] Fetched 112 kB in 0s (1548 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9vnv2hp/libncurses6_6.5+20250216-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Fetched 116 kB in 0s (1539 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9eii9_kh/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libssl3t64 i386 3.4.1-1 [2298 kB] Fetched 2298 kB in 0s (37.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz5083unj/libssl3t64_3.4.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 sed i386 4.9-2 [333 kB] Fetched 333 kB in 0s (28.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprroapshb/sed_4.9-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 916 kB in 0s (71.7 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb' to '/srv/rebuilderd/tmp/tmp8why6wiw/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 linux-libc-dev all 6.12.16-1 [2522 kB] Fetched 2522 kB in 0s (140 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9bxvolnj/linux-libc-dev_6.12.16-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Fetched 2266 kB in 0s (113 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplzyoxls2/python3.13-minimal_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cpp-i686-linux-gnu i386 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (0 B/s) dpkg-name: info: moved 'cpp-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp5hx0hl0p/cpp-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libatomic1 i386 14.2.0-17 [7644 B] Fetched 7644 B in 0s (87.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb7wizg9p/libatomic1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libp11-kit-dev i386 0.25.5-3 [208 kB] Fetched 208 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpksihzb81/libp11-kit-dev_0.25.5-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cpp-14 i386 14.2.0-17 [1280 B] Fetched 1280 B in 0s (25.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpapz2zbbr/cpp-14_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libmount1 i386 2.40.4-5 [214 kB] Fetched 214 kB in 0s (4354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkvpaoclq/libmount1_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdb5.3t64 i386 5.3.28+dfsg2-9 [767 kB] Fetched 767 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsnjmqqz/libdb5.3t64_5.3.28+dfsg2-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libstdc++6 i386 14.2.0-17 [765 kB] Fetched 765 kB in 0s (57.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkpbmukk4/libstdc++6_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Fetched 96.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkk3dgh_7/bsdextrautils_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmpc3 i386 1.3.1-1+b3 [60.5 kB] Fetched 60.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnv3cjd_q/libmpc3_1.3.1-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Fetched 859 kB in 0s (74.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5lqm561j/libpython3.13-minimal_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcap-ng0 i386 0.8.5-4 [17.6 kB] Fetched 17.6 kB in 0s (1578 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3m8xgsh/libcap-ng0_0.8.5-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Fetched 24.3 kB in 0s (160 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp139be2fi/libcom-err2_1.47.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc i386 4:14.2.0-1 [5132 B] Fetched 5132 B in 0s (210 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmphsj413g1/gcc_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Fetched 734 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5p3an0qf/libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB] Fetched 130 kB in 0s (6616 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprmhm3fp2/libidn2-0_2.3.7-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libjansson4 i386 2.14-2+b3 [41.6 kB] Fetched 41.6 kB in 0s (3097 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsno6iex/libjansson4_2.14-2+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkdb5-10t64 i386 1.21.3-4 [45.3 kB] Fetched 45.3 kB in 0s (745 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphql2e1tt/libkdb5-10t64_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libzstd1 i386 1.5.6+dfsg-2 [289 kB] Fetched 289 kB in 0s (7396 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo_cs5fxj/libzstd1_1.5.6+dfsg-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 netbase all 6.4 [12.8 kB] Fetched 12.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjdvd0n3j/netbase_6.4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk30ufgx7/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbrotli-dev i386 1.1.0-2+b6 [313 kB] Fetched 313 kB in 0s (27.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsmzby7i1/libbrotli-dev_1.1.0-2+b6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gzip i386 1.13-1 [139 kB] Fetched 139 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_wq52aj8/gzip_1.13-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libidn2-dev i386 2.3.7-2+b1 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6c721ni/libidn2-dev_2.3.7-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3 i386 3.13.2-1 [28.1 kB] Fetched 28.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprqinwuxx/python3_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 ncurses-base all 6.5+20250216-1 [273 kB] Fetched 273 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2tzecywu/ncurses-base_6.5+20250216-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5uj9pm4c/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3beu_gws/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 make i386 4.4.1-1 [470 kB] Fetched 470 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkeidqlle/make_4.4.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 tabix i386 1.21+ds-1 [541 kB] Fetched 541 kB in 0s (6446 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmhzau1g/tabix_1.21+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libexpat1-dev i386 2.6.4-1 [165 kB] Fetched 165 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjg_afbc4/libexpat1-dev_2.6.4-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libtool all 2.5.4-3 [539 kB] Fetched 539 kB in 0s (46.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcci12nqd/libtool_2.5.4-3_all.deb' Downloading dependency 1 of 255: libtasn1-6:i386=4.20.0-2 Downloading dependency 2 of 255: libdeflate-dev:i386=1.23-1+b1 Downloading dependency 3 of 255: binutils-common:i386=2.44-2 Downloading dependency 4 of 255: liblzma-dev:i386=5.6.3-1+b1 Downloading dependency 5 of 255: libncursesw6:i386=6.5+20250216-1 Downloading dependency 6 of 255: libtasn1-6-dev:i386=4.20.0-2 Downloading dependency 7 of 255: media-types:i386=12.0.0 Downloading dependency 8 of 255: perl:i386=5.40.1-2 Downloading dependency 9 of 255: libubsan1:i386=14.2.0-17 Downloading dependency 10 of 255: libgdbm-compat4t64:i386=1.24-2 Downloading dependency 11 of 255: libdebconfclient0:i386=0.277 Downloading dependency 12 of 255: 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libselinux1:i386=3.8-3 Downloading dependency 45 of 255: python3-all-dev:i386=3.13.2-1 Downloading dependency 46 of 255: libpsl-dev:i386=0.21.2-1.1+b1 Downloading dependency 47 of 255: libkrb5support0:i386=1.21.3-4 Downloading dependency 48 of 255: python3-inflect:i386=7.3.1-2 Downloading dependency 49 of 255: python3-iniconfig:i386=1.1.1-2 Downloading dependency 50 of 255: comerr-dev:i386=2.1-1.47.2-1 Downloading dependency 51 of 255: util-linux:i386=2.40.4-5 Downloading dependency 52 of 255: samtools:i386=1.21-1 Downloading dependency 53 of 255: krb5-multidev:i386=1.21.3-4 Downloading dependency 54 of 255: libpsl5t64:i386=0.21.2-1.1+b1 Downloading dependency 55 of 255: python3-zipp:i386=3.21.0-1 Downloading dependency 56 of 255: gcc-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 57 of 255: sysvinit-utils:i386=3.14-1 Downloading dependency 58 of 255: libp11-kit0:i386=0.25.5-3 Downloading dependency 59 of 255: bsdutils:i386=1:2.40.4-5 Downloading dependency 60 of 255: python3-typeguard:i386=4.4.2-1 Downloading dependency 61 of 255: libgnutls-openssl27t64:i386=3.8.9-2 Downloading dependency 62 of 255: g++-14:i386=14.2.0-17 Downloading dependency 63 of 255: liblzma5:i386=5.6.3-1+b1 Downloading dependency 64 of 255: pkgconf:i386=1.8.1-4 Downloading dependency 65 of 255: bcftools:i386=1.21-1 Downloading dependency 66 of 255: diffutils:i386=1:3.10-2 Downloading dependency 67 of 255: libssh2-1t64:i386=1.11.1-1 Downloading dependency 68 of 255: libkeyutils1:i386=1.6.3-4 Downloading dependency 69 of 255: libsasl2-2:i386=2.1.28+dfsg1-8+b1 Downloading dependency 70 of 255: libnghttp3-dev:i386=1.6.0-2 Downloading dependency 71 of 255: nettle-dev:i386=3.10.1-1 Downloading dependency 72 of 255: libc-dev-bin:i386=2.40-7 Downloading dependency 73 of 255: libnghttp2-dev:i386=1.64.0-1 Downloading dependency 74 of 255: libpython3.13-stdlib:i386=3.13.2-1 Downloading dependency 75 of 255: python3.13:i386=3.13.2-1 Downloading dependency 76 of 255: librtmp-dev:i386=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 77 of 255: libngtcp2-crypto-gnutls8:i386=1.9.1-1 Downloading dependency 78 of 255: libkrb5-3:i386=1.21.3-4 Downloading dependency 79 of 255: dpkg:i386=1.22.15 Downloading dependency 80 of 255: libzstd-dev:i386=1.5.6+dfsg-2 Downloading dependency 81 of 255: tzdata:i386=2025a-2 Downloading dependency 82 of 255: libaudit-common:i386=1:4.0.2-2 Downloading dependency 83 of 255: libkrb5-dev:i386=1.21.3-4 Downloading dependency 84 of 255: libdeflate0:i386=1.23-1+b1 Downloading dependency 85 of 255: libisl23:i386=0.27-1 Downloading dependency 86 of 255: po-debconf:i386=1.0.21+nmu1 Downloading dependency 87 of 255: libpython3-dev:i386=3.13.2-1 Downloading dependency 88 of 255: build-essential:i386=12.12 Downloading dependency 89 of 255: coreutils:i386=9.5-1 Downloading dependency 90 of 255: libpython3-stdlib:i386=3.13.2-1 Downloading dependency 91 of 255: libsystemd0:i386=257.3-1 Downloading dependency 92 of 255: perl-modules-5.40:i386=5.40.1-2 Downloading dependency 93 of 255: dh-python:i386=6.20250108 Downloading dependency 94 of 255: libbinutils:i386=2.44-2 Downloading dependency 95 of 255: libncurses6:i386=6.5+20250216-1 Downloading dependency 96 of 255: libjs-underscore:i386=1.13.4~dfsg+~1.11.4-3 Downloading dependency 97 of 255: libssl3t64:i386=3.4.1-1 Downloading dependency 98 of 255: sed:i386=4.9-2 Downloading dependency 99 of 255: zlib1g-dev:i386=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 100 of 255: linux-libc-dev:i386=6.12.16-1 Downloading dependency 101 of 255: python3.13-minimal:i386=3.13.2-1 Downloading dependency 102 of 255: cpp-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 103 of 255: libatomic1:i386=14.2.0-17 Downloading dependency 104 of 255: libp11-kit-dev:i386=0.25.5-3 Downloading dependency 105 of 255: cpp-14:i386=14.2.0-17 Downloading dependency 106 of 255: libmount1:i386=2.40.4-5 Downloading dependency 107 of 255: libdb5.3t64:i386=5.3.28+dfsg2-9 Downloading dependency 108 of 255: libstdc++6:i386=14.2.0-17 Downloading dependency 109 of 255: bsdextrautils:i386=2.40.4-5 Downloading dependency 110 of 255: libmpc3:i386=1.3.1-1+b3 Downloading dependency 111 of 255: libpython3.13-minimal:i386=3.13.2-1 Downloading dependency 112 of 255: libcap-ng0:i386=0.8.5-4 Downloading dependency 113 of 255: libcom-err2:i386=1.47.2-1 Downloading dependency 114 of 255: gcc:i386=4:14.2.0-1 Downloading dependency 115 of 255: libxml2:i386=2.12.7+dfsg+really2.9.14-0.2+b1 Downloading dependency 116 of 255: libidn2-0:i386=2.3.7-2+b1 Downloading dependency 117 of 255: libjansson4:i386=2.14-2+b3 Downloading dependency 118 of 255: libkdb5-10t64:i386=1.21.3-4 Downloading dependency 119 of 255: libzstd1:i386=1.5.6+dfsg-2 Downloading dependency 120 of 255: netbase:i386=6.4 Downloading dependency 121 of 255: sensible-utils:i386=0.0.24 Downloading dependency 122 of 255: libbrotli-dev:i386=1.1.0-2+b6 Downloading dependency 123 of 255: gzip:i386=1.13-1 Downloading dependency 124 of 255: libidn2-dev:i386=2.3.7-2+b1 Downloading dependency 125 of 255: python3:i386=3.13.2-1 Downloading dependency 126 of 255: ncurses-base:i386=6.5+20250216-1 Downloading dependency 127 of 255: libfile-stripnondeterminism-perl:i386=1.14.1-2 Downloading dependency 128 of 255: dh-strip-nondeterminism:i386=1.14.1-2 Downloading dependency 129 of 255: make:i386=4.4.1-1 Downloading dependency 130 of 255: tabix:i386=1.21+ds-1 Downloading dependency 131 of 255: libexpat1-dev:i386=2.6.4-1 Downloading dependency 132 of 255: libtool:i386=2.5.4-3 Downloading dependency 133 of 255: bzip2:i386=1.0.8-6Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 bzip2 i386 1.0.8-6 [40.7 kB] Fetched 40.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8i4ls0er/bzip2_1.0.8-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 debianutils i386 5.21 [92.4 kB] Fetched 92.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprvmsz5ng/debianutils_5.21_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpython3.13-dev i386 3.13.2-1 [5181 kB] Fetched 5181 kB in 0s (139 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsfc6crck/libpython3.13-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8+b1 [20.9 kB] Fetched 20.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsfpvtnnd/libsasl2-modules-db_2.1.28+dfsg1-8+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libunbound8 i386 1.22.0-1+b1 [633 kB] Fetched 633 kB in 0s (6709 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7j28h7zh/libunbound8_1.22.0-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgcc-14-dev i386 14.2.0-17 [2581 kB] Fetched 2581 kB in 0s (151 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnvh9t9nb/libgcc-14-dev_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 hostname i386 3.25 [11.3 kB] Fetched 11.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf5tura7j/hostname_3.25_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 sse2-support i386 26 [3488 B] Fetched 3488 B in 0s (43.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe6qni6qw/sse2-support_26_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB] Fetched 151 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp6ja2mt5/libngtcp2-16_1.9.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libhts3t64 i386 1.21+ds-1 [506 kB] Fetched 506 kB in 0s (50.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy7z7so6n/libhts3t64_1.21+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libseccomp2 i386 2.5.5-2 [50.1 kB] Fetched 50.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptpv4cdy7/libseccomp2_2.5.5-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 g++-i686-linux-gnu i386 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (0 B/s) dpkg-name: info: moved 'g++-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp9jkuohjq/g++-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpam0g i386 1.7.0-3 [72.7 kB] Fetched 72.7 kB in 0s (6953 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxg1uxt0/libpam0g_1.7.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Fetched 32.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdgfnuq7k/libbz2-dev_1.0.8-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cpp-14-i686-linux-gnu i386 14.2.0-17 [12.0 MB] Fetched 12.0 MB in 0s (209 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzgjavrq8/cpp-14-i686-linux-gnu_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 rpcsvc-proto i386 1.4.3-1 [66.1 kB] Fetched 66.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8djl1c_d/rpcsvc-proto_1.4.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 mawk i386 1.3.4.20250131-1 [144 kB] Fetched 144 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4fgeyoci/mawk_1.3.4.20250131-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dpkg-dev all 1.22.15 [1337 kB] Fetched 1337 kB in 0s (99.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpllvaj53p/dpkg-dev_1.22.15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 isa-support i386 26 [17.7 kB] Fetched 17.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy7ku3bby/isa-support_26_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cython3 i386 3.0.11+dfsg-2 [3020 kB] Fetched 3020 kB in 0s (69.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3zem97_6/cython3_3.0.11+dfsg-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libssl-dev i386 3.4.1-1 [2837 kB] Fetched 2837 kB in 0s (147 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpifg2hw6o/libssl-dev_3.4.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc-14 i386 14.2.0-17 [537 kB] Fetched 537 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmperc9n4jb/gcc-14_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 debconf all 1.5.89 [120 kB] Fetched 120 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4jovspju/debconf_1.5.89_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps9357a00/libpam-runtime_1.7.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdkay8lj2/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Fetched 7984 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9t91eth/python3-jaraco.context_6.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB] Fetched 1462 kB in 0s (41.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj28zp8ob/libgnutls30t64_3.8.9-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 tar i386 1.35+dfsg-3.1 [838 kB] Fetched 838 kB in 0s (66.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqaxq2z6v/tar_1.35+dfsg-3.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgnutls28-dev i386 3.8.9-2 [1464 kB] Fetched 1464 kB in 0s (18.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ndq2s7k/libgnutls28-dev_3.8.9-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB] Fetched 75.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnmapsuhn/libnghttp3-9_1.6.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 file i386 1:5.45-3+b1 [43.2 kB] Fetched 43.2 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.45-3+b1_i386.deb' to '/srv/rebuilderd/tmp/tmpj5sa9lx6/file_5.45-3+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3.13-dev i386 3.13.2-1 [505 kB] Fetched 505 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg8gbay4b/python3.13-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmd0 i386 1.1.0-2+b1 [38.4 kB] Fetched 38.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuzk5ggxh/libmd0_1.1.0-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB] Fetched 30.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgpqg_nux/pkgconf-bin_1.8.1-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 binutils i386 2.44-2 [269 kB] Fetched 269 kB in 0s (24.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphj1edbeu/binutils_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libldap-dev i386 2.6.9+dfsg-1 [328 kB] Fetched 328 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqkqk94a6/libldap-dev_2.6.9+dfsg-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Fetched 90.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpadye3geg/libdebhelper-perl_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsframe1 i386 2.44-2 [78.4 kB] Fetched 78.4 kB in 0s (824 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ni2zdc8/libsframe1_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Fetched 149 kB in 0s (4561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0lknnpix/libgssapi-krb5-2_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 zlib1g i386 1:1.3.dfsg+really1.3.1-1+b1 [84.7 kB] Fetched 84.7 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb' to '/srv/rebuilderd/tmp/tmp57dqpahv/zlib1g_1.3.dfsg+really1.3.1-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpam-modules-bin i386 1.7.0-3 [51.0 kB] Fetched 51.0 kB in 0s (620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01i3eu1l/libpam-modules-bin_1.7.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 perl-base i386 5.40.1-2 [1775 kB] Fetched 1775 kB in 0s (61.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaeqlwk6b/perl-base_5.40.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gettext i386 0.23.1-1 [1714 kB] Fetched 1714 kB in 0s (126 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4kyuibd1/gettext_0.23.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcc1-0 i386 14.2.0-17 [44.9 kB] Fetched 44.9 kB in 0s (3615 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsfo0fgtu/libcc1-0_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libngtcp2-dev i386 1.9.1-1 [202 kB] Fetched 202 kB in 0s (3797 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpciv3i8i_/libngtcp2-dev_1.9.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libngtcp2-crypto-gnutls-dev i386 1.9.1-1 [24.0 kB] Fetched 24.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9q2agge4/libngtcp2-crypto-gnutls-dev_1.9.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkadm5clnt-mit12 i386 1.21.3-4 [44.1 kB] Fetched 44.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnb5d298c/libkadm5clnt-mit12_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB] Fetched 205 kB in 0s (20.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp078_pz9u/libldap2_2.6.9+dfsg-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-setuptools all 75.8.0-1 [724 kB] Fetched 724 kB in 0s (58.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_5v00bna/python3-setuptools_75.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libhogweed6t64 i386 3.10.1-1 [338 kB] Fetched 338 kB in 0s (25.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppls0f37v/libhogweed6t64_3.10.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 debhelper all 13.24.1 [920 kB] Fetched 920 kB in 0s (75.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkhcv0zw0/debhelper_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB] Fetched 38.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8hcm0ciw/libpkgconf3_1.8.1-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 ncurses-bin i386 6.5+20250216-1 [441 kB] Fetched 441 kB in 0s (33.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmponna7upu/ncurses-bin_6.5+20250216-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3wc3_wma/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgmp10 i386 2:6.3.0+dfsg-3 [572 kB] Fetched 572 kB in 0s (0 B/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_i386.deb' to '/srv/rebuilderd/tmp/tmpvqfscu72/libgmp10_6.3.0+dfsg-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (5147 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgqdxu8ho/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (5325 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95rl6yih/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgprofng0 i386 2.44-2 [847 kB] Fetched 847 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxe_1hno/libgprofng0_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 grep i386 3.11-4 [437 kB] Fetched 437 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuneasr0x/grep_3.11-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libperl5.40 i386 5.40.1-2 [3962 kB] Fetched 3962 kB in 0s (169 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglyuw6vo/libperl5.40_5.40.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dwz i386 0.15-1+b1 [116 kB] Fetched 116 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpux6pzqpm/dwz_0.15-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Fetched 41.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw5_sr1gr/libpipeline1_1.5.8-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 bash i386 5.2.37-1.1 [1536 kB] Fetched 1536 kB in 0s (45.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw1se5w36/bash_5.2.37-1.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 binutils-i686-linux-gnu i386 2.44-2 [1072 kB] Fetched 1072 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0jwub4h9/binutils-i686-linux-gnu_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libctf-nobfd0 i386 2.44-2 [159 kB] Fetched 159 kB in 0s (2527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplelubxad/libctf-nobfd0_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libctf0 i386 2.44-2 [94.4 kB] Fetched 94.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpffsmysuy/libctf0_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-3 [329 kB] Fetched 329 kB in 0s (30.8 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-3_i386.deb' to '/srv/rebuilderd/tmp/tmpbwp4cz9g/libgmpxx4ldbl_6.3.0+dfsg-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 base-files i386 13.6 [72.8 kB] Fetched 72.8 kB in 0s (2827 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpig3n8fa1/base-files_13.6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Fetched 222 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4vpd3ren/python3-pkg-resources_75.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 xz-utils i386 5.6.3-1+b1 [546 kB] Fetched 546 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbkmto84f/xz-utils_5.6.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgmp-dev i386 2:6.3.0+dfsg-3 [661 kB] Fetched 661 kB in 0s (7064 kB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-3_i386.deb' to '/srv/rebuilderd/tmp/tmpbgl_l2us/libgmp-dev_6.3.0+dfsg-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmpfr6 i386 4.2.1-1+b2 [752 kB] Fetched 752 kB in 0s (57.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5sw54k6q/libmpfr6_4.2.1-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libsmartcols1 i386 2.40.4-5 [148 kB] Fetched 148 kB in 0s (14.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt0v4yzwq/libsmartcols1_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (271 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp34s4ic7c/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libasan8 i386 14.2.0-17 [2606 kB] Fetched 2606 kB in 0s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lobj2o0/libasan8_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3-dev i386 3.13.2-1 [26.1 kB] Fetched 26.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpht1r829w/python3-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdpkg-perl all 1.22.15 [648 kB] Fetched 648 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw_swnhj5/libdpkg-perl_1.22.15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpython3.13 i386 3.13.2-1 [2199 kB] Fetched 2199 kB in 0s (147 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprz3azda4/libpython3.13_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3-minimal i386 3.13.2-1 [27.1 kB] Fetched 27.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8j_kem2/python3-minimal_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 g++ i386 4:14.2.0-1 [1340 B] Fetched 1340 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp73z0p28a/g++_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkadm5srv-mit12 i386 1.21.3-4 [57.7 kB] Fetched 57.7 kB in 0s (2533 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppdirbiwj/libkadm5srv-mit12_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libacl1 i386 2.3.2-2+b1 [34.4 kB] Fetched 34.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp09ukygdt/libacl1_2.3.2-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libreadline8t64 i386 8.2-6 [173 kB] Fetched 173 kB in 0s (2473 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4_x5_47i/libreadline8t64_8.2-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgnutls-dane0t64 i386 3.8.9-2 [453 kB] Fetched 453 kB in 0s (8111 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi1vcg968/libgnutls-dane0t64_3.8.9-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (766 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp0dq67gw/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Fetched 65.3 kB in 0s (209 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeth5r71f/python3-more-itertools_10.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Fetched 69.2 kB in 0s (638 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps8_n8wdg/libuchardet0_0.0.8-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Fetched 82.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0jethz59/libnghttp2-14_1.64.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libuuid1 i386 2.40.4-5 [37.6 kB] Fetched 37.6 kB in 0s (2917 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8735v5im/libuuid1_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libelf1t64 i386 0.192-4 [195 kB] Fetched 195 kB in 0s (19.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpreon86y8/libelf1t64_0.192-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 findutils i386 4.10.0-3 [714 kB] Fetched 714 kB in 0s (57.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa_a06yor/findutils_4.10.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libattr1 i386 1:2.5.2-3 [23.1 kB] Fetched 23.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_i386.deb' to '/srv/rebuilderd/tmp/tmp4_tl5_fx/libattr1_2.5.2-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libhtscodecs2 i386 1.6.1-2 [70.9 kB] Fetched 70.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxdt2lyr/libhtscodecs2_1.6.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Fetched 21.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphr_76u8_/libffi8_3.4.7-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb_xr8o0r/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgssrpc4t64 i386 1.21.3-4 [63.4 kB] Fetched 63.4 kB in 0s (1288 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxl40eoid/libgssrpc4t64_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libc6-dev i386 2.40-7 [1775 kB] Fetched 1775 kB in 0s (89.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdg6_lhhq/libc6-dev_2.40-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libexpat1 i386 2.6.4-1 [107 kB] Fetched 107 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjljuukc4/libexpat1_2.6.4-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libicu72 i386 72.1-6 [9582 kB] Fetched 9582 kB in 0s (144 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpomoyw6di/libicu72_72.1-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libpython3-all-dev i386 3.13.2-1 [1068 B] Fetched 1068 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1vm7gipi/libpython3-all-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libhts-dev i386 1.21+ds-1 [1725 kB] Fetched 1725 kB in 0s (83.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppmaj52uo/libhts-dev_1.21+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgdbm6t64 i386 1.24-2 [80.2 kB] Fetched 80.2 kB in 0s (3646 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdx6htmxg/libgdbm6t64_1.24-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgomp1 i386 14.2.0-17 [138 kB] Fetched 138 kB in 0s (3695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfku3qfxz/libgomp1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libaudit1 i386 1:4.0.2-2+b1 [53.1 kB] Fetched 53.1 kB in 0s (5005 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b1_i386.deb' to '/srv/rebuilderd/tmp/tmpfj4532_x/libaudit1_4.0.2-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3-all i386 3.13.2-1 [1048 B] Fetched 1048 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmm5uxk9m/python3-all_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 m4 i386 1.4.19-5 [301 kB] Fetched 301 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0vw37roe/m4_1.4.19-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcap2 i386 1:2.73-4 [28.3 kB] Fetched 28.3 kB in 0s (2612 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.73-4_i386.deb' to '/srv/rebuilderd/tmp/tmp2s_w9k68/libcap2_2.73-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 patch i386 2.7.6-7 [141 kB] Fetched 141 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp03br0n3w/patch_2.7.6-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Fetched 73.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp32685oi3/python3-typing-extensions_4.12.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc-14-base i386 14.2.0-17 [49.1 kB] Fetched 49.1 kB in 0s (691 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5cr9twy9/gcc-14-base_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libblkid1 i386 2.40.4-5 [185 kB] Fetched 185 kB in 0s (18.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcrw5e5ey/libblkid1_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpam-modules i386 1.7.0-3 [190 kB] Fetched 190 kB in 0s (17.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcycwvnyc/libpam-modules_1.7.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB] Fetched 407 kB in 0s (35.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppl_cfy6p/libssh2-1-dev_1.11.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (2105 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmmf1ewjr/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libunistring5 i386 1.3-1 [458 kB] Fetched 458 kB in 0s (37.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdxc7y2sh/libunistring5_1.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcrypt-dev i386 1:4.4.38-1 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_i386.deb' to '/srv/rebuilderd/tmp/tmp7d8ubutj/libcrypt-dev_4.4.38-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Fetched 30.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp22ho0vfq/libjs-sphinxdoc_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc-14-i686-linux-gnu i386 14.2.0-17 [23.3 MB] Fetched 23.3 MB in 0s (209 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplmasr3ba/gcc-14-i686-linux-gnu_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 openssl-provider-legacy i386 3.4.1-1 [298 kB] Fetched 298 kB in 0s (3316 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4a110ic0/openssl-provider-legacy_3.4.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6bp0uuc2/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libudev1 i386 257.3-1 [153 kB] Fetched 153 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbhkosr9y/libudev1_257.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libstdc++-14-dev i386 14.2.0-17 [2441 kB] Fetched 2441 kB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7u6wwz7/libstdc++-14-dev_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsqlite3-0 i386 3.46.1-1 [988 kB] Fetched 988 kB in 0s (71.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7vjrw07i/libsqlite3-0_3.46.1-1_i386.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp54jwl9ke/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: i386 is different from amd64 but can be executed natively I: using /srv/rebuilderd/tmp/mmdebstrap.AiNlWFQfEZ as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.AiNlWFQfEZ 127.0.0.1 - - [23/Jul/2025 21:43:24] code 404, message File not found 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:38411 ./ InRelease 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:38411 ./ Release [462 B] 127.0.0.1 - - [23/Jul/2025 21:43:24] code 404, message File not found 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:38411 ./ Release.gpg 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:38411 ./ Packages [310 kB] Fetched 311 kB in 0s (17.2 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./gcc-14-base_14.2.0-17_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libc6_2.40-7_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libgcc-s1_14.2.0-17_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./mawk_1.3.4.20250131-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./base-files_13.6_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libtinfo6_6.5%2b20250216-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./debianutils_5.21_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./bash_5.2.37-1.1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libcap2_2.73-4_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libsystemd0_257.3-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./bsdutils_2.40.4-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libacl1_2.3.2-2%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libattr1_2.5.2-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libgmp10_6.3.0%2bdfsg-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libpcre2-8-0_10.45-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libselinux1_3.8-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libzstd1_1.5.6%2bdfsg-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./libssl3t64_3.4.1-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./openssl-provider-legacy_3.4.1-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./coreutils_9.5-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./dash_0.5.12-12_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:43:24] "GET /./diffutils_3.10-2_i386.deb HTTP/1.1" 200 - 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I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.AiNlWFQfEZ 127.0.0.1 - - [23/Jul/2025 21:43:26] code 404, message File not found 127.0.0.1 - - [23/Jul/2025 21:43:26] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:38411 ./ InRelease 127.0.0.1 - - [23/Jul/2025 21:43:26] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:38411 ./ Release 127.0.0.1 - - [23/Jul/2025 21:43:26] code 404, message File not found 127.0.0.1 - - [23/Jul/2025 21:43:26] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:38411 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [23/Jul/2025 21:44:07] "GET /./libhts-dev_1.21%2bds-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [23/Jul/2025 21:44:07] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp54jwl9ke/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.AiNlWFQfEZ Reading package lists... Building dependency tree... Reading state information... libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libdeflate-dev is already the newest version (1.23-1+b1). libdeflate-dev set to manually installed. binutils-common is already the newest version (2.44-2). binutils-common set to manually installed. liblzma-dev is already the newest version (5.6.3-1+b1). liblzma-dev set to manually installed. libncursesw6 is already the newest version (6.5+20250216-1). libncursesw6 set to manually installed. libtasn1-6-dev is already the newest version (4.20.0-2). libtasn1-6-dev set to manually installed. media-types is already the newest version (12.0.0). media-types set to manually installed. perl is already the newest version (5.40.1-2). perl set to manually installed. libubsan1 is already the newest version (14.2.0-17). libubsan1 set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. libdebconfclient0 is already the newest version (0.277). libpcre2-8-0 is already the newest version (10.45-1). libitm1 is already the newest version (14.2.0-17). libitm1 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libk5crypto3 is already the newest version (1.21.3-4). libk5crypto3 set to manually installed. groff-base is already the newest version (1.23.0-7). groff-base set to manually installed. libnettle8t64 is already the newest version (3.10.1-1). libnettle8t64 set to manually installed. base-passwd is already the newest version (3.6.6). g++-14-i686-linux-gnu is already the newest version (14.2.0-17). g++-14-i686-linux-gnu set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-2.1-7t64 set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libgcc-s1 is already the newest version (14.2.0-17). libmagic-mgc is already the newest version (1:5.45-3+b1). libmagic-mgc set to manually installed. libquadmath0 is already the newest version (14.2.0-17). libquadmath0 set to manually installed. libmagic1t64 is already the newest version (1:5.45-3+b1). libmagic1t64 set to manually installed. python3-packaging is already the newest version (24.2-1). python3-packaging set to manually installed. python3-pytest is already the newest version (8.3.4-1). python3-pytest set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libtinfo6 is already the newest version (6.5+20250216-1). libc6 is already the newest version (2.40-7). libc-bin is already the newest version (2.40-7). python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. automake is already the newest version (1:1.17-3). automake set to manually installed. python3-pluggy is already the newest version (1.5.0-1). python3-pluggy set to manually installed. libcurl3t64-gnutls is already the newest version (8.12.1-3). libcurl3t64-gnutls set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b6). libbrotli1 set to manually installed. gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. libcurl4-gnutls-dev is already the newest version (8.12.1-3). libcurl4-gnutls-dev set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. dash is already the newest version (0.5.12-12). libselinux1 is already the newest version (3.8-3). python3-all-dev is already the newest version (3.13.2-1). python3-all-dev set to manually installed. libpsl-dev is already the newest version (0.21.2-1.1+b1). libpsl-dev set to manually installed. libkrb5support0 is already the newest version (1.21.3-4). libkrb5support0 set to manually installed. python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. python3-iniconfig is already the newest version (1.1.1-2). python3-iniconfig set to manually installed. comerr-dev is already the newest version (2.1-1.47.2-1). comerr-dev set to manually installed. util-linux is already the newest version (2.40.4-5). samtools is already the newest version (1.21-1). samtools set to manually installed. krb5-multidev is already the newest version (1.21.3-4). krb5-multidev set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. gcc-i686-linux-gnu is already the newest version (4:14.2.0-1). gcc-i686-linux-gnu set to manually installed. sysvinit-utils is already the newest version (3.14-1). libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. bsdutils is already the newest version (1:2.40.4-5). python3-typeguard is already the newest version (4.4.2-1). python3-typeguard set to manually installed. libgnutls-openssl27t64 is already the newest version (3.8.9-2). libgnutls-openssl27t64 set to manually installed. g++-14 is already the newest version (14.2.0-17). g++-14 set to manually installed. liblzma5 is already the newest version (5.6.3-1+b1). pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. bcftools is already the newest version (1.21-1). bcftools set to manually installed. diffutils is already the newest version (1:3.10-2). libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. libkeyutils1 is already the newest version (1.6.3-4). libkeyutils1 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-8+b1). libsasl2-2 set to manually installed. libnghttp3-dev is already the newest version (1.6.0-2). libnghttp3-dev set to manually installed. nettle-dev is already the newest version (3.10.1-1). nettle-dev set to manually installed. libc-dev-bin is already the newest version (2.40-7). libc-dev-bin set to manually installed. libnghttp2-dev is already the newest version (1.64.0-1). libnghttp2-dev set to manually installed. libpython3.13-stdlib is already the newest version (3.13.2-1). libpython3.13-stdlib set to manually installed. python3.13 is already the newest version (3.13.2-1). python3.13 set to manually installed. librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp-dev set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.9.1-1). libngtcp2-crypto-gnutls8 set to manually installed. libkrb5-3 is already the newest version (1.21.3-4). libkrb5-3 set to manually installed. dpkg is already the newest version (1.22.15). libzstd-dev is already the newest version (1.5.6+dfsg-2). libzstd-dev set to manually installed. tzdata is already the newest version (2025a-2). tzdata set to manually installed. libaudit-common is already the newest version (1:4.0.2-2). libkrb5-dev is already the newest version (1.21.3-4). libkrb5-dev set to manually installed. libdeflate0 is already the newest version (1.23-1+b1). libdeflate0 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libpython3-dev is already the newest version (3.13.2-1). libpython3-dev set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. coreutils is already the newest version (9.5-1). libpython3-stdlib is already the newest version (3.13.2-1). libpython3-stdlib set to manually installed. libsystemd0 is already the newest version (257.3-1). perl-modules-5.40 is already the newest version (5.40.1-2). perl-modules-5.40 set to manually installed. dh-python is already the newest version (6.20250108). dh-python set to manually installed. libbinutils is already the newest version (2.44-2). libbinutils set to manually installed. libncurses6 is already the newest version (6.5+20250216-1). libncurses6 set to manually installed. libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3). libjs-underscore set to manually installed. libssl3t64 is already the newest version (3.4.1-1). sed is already the newest version (4.9-2). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. linux-libc-dev is already the newest version (6.12.16-1). linux-libc-dev set to manually installed. python3.13-minimal is already the newest version (3.13.2-1). python3.13-minimal set to manually installed. cpp-i686-linux-gnu is already the newest version (4:14.2.0-1). cpp-i686-linux-gnu set to manually installed. libatomic1 is already the newest version (14.2.0-17). libatomic1 set to manually installed. libp11-kit-dev is already the newest version (0.25.5-3). libp11-kit-dev set to manually installed. cpp-14 is already the newest version (14.2.0-17). cpp-14 set to manually installed. libmount1 is already the newest version (2.40.4-5). libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libstdc++6 is already the newest version (14.2.0-17). libstdc++6 set to manually installed. bsdextrautils is already the newest version (2.40.4-5). bsdextrautils set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. libpython3.13-minimal is already the newest version (3.13.2-1). libpython3.13-minimal set to manually installed. libcap-ng0 is already the newest version (0.8.5-4). libcom-err2 is already the newest version (1.47.2-1). libcom-err2 set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.2+b1). libxml2 set to manually installed. libidn2-0 is already the newest version (2.3.7-2+b1). libidn2-0 set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libkdb5-10t64 is already the newest version (1.21.3-4). libkdb5-10t64 set to manually installed. libzstd1 is already the newest version (1.5.6+dfsg-2). netbase is already the newest version (6.4). netbase set to manually installed. sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b6). libbrotli-dev set to manually installed. gzip is already the newest version (1.13-1). libidn2-dev is already the newest version (2.3.7-2+b1). libidn2-dev set to manually installed. python3 is already the newest version (3.13.2-1). python3 set to manually installed. ncurses-base is already the newest version (6.5+20250216-1). libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. make is already the newest version (4.4.1-1). make set to manually installed. tabix is already the newest version (1.21+ds-1). tabix set to manually installed. libexpat1-dev is already the newest version (2.6.4-1). libexpat1-dev set to manually installed. libtool is already the newest version (2.5.4-3). libtool set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. debianutils is already the newest version (5.21). libpython3.13-dev is already the newest version (3.13.2-1). libpython3.13-dev set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-8+b1). libsasl2-modules-db set to manually installed. libunbound8 is already the newest version (1.22.0-1+b1). libunbound8 set to manually installed. libgcc-14-dev is already the newest version (14.2.0-17). libgcc-14-dev set to manually installed. hostname is already the newest version (3.25). sse2-support is already the newest version (26). sse2-support set to manually installed. libngtcp2-16 is already the newest version (1.9.1-1). libngtcp2-16 set to manually installed. libhts3t64 is already the newest version (1.21+ds-1). libhts3t64 set to manually installed. libseccomp2 is already the newest version (2.5.5-2). libseccomp2 set to manually installed. g++-i686-linux-gnu is already the newest version (4:14.2.0-1). g++-i686-linux-gnu set to manually installed. libpam0g is already the newest version (1.7.0-3). libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. cpp-14-i686-linux-gnu is already the newest version (14.2.0-17). cpp-14-i686-linux-gnu set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. mawk is already the newest version (1.3.4.20250131-1). dpkg-dev is already the newest version (1.22.15). dpkg-dev set to manually installed. isa-support is already the newest version (26). isa-support set to manually installed. cython3 is already the newest version (3.0.11+dfsg-2). cython3 set to manually installed. libssl-dev is already the newest version (3.4.1-1). libssl-dev set to manually installed. gcc-14 is already the newest version (14.2.0-17). gcc-14 set to manually installed. debconf is already the newest version (1.5.89). libpam-runtime is already the newest version (1.7.0-3). python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. python3-jaraco.context is already the newest version (6.0.0-1). python3-jaraco.context set to manually installed. libgnutls30t64 is already the newest version (3.8.9-2). libgnutls30t64 set to manually installed. tar is already the newest version (1.35+dfsg-3.1). libgnutls28-dev is already the newest version (3.8.9-2). libgnutls28-dev set to manually installed. libnghttp3-9 is already the newest version (1.6.0-2). libnghttp3-9 set to manually installed. file is already the newest version (1:5.45-3+b1). file set to manually installed. python3.13-dev is already the newest version (3.13.2-1). python3.13-dev set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. binutils is already the newest version (2.44-2). binutils set to manually installed. libldap-dev is already the newest version (2.6.9+dfsg-1). libldap-dev set to manually installed. libdebhelper-perl is already the newest version (13.24.1). libdebhelper-perl set to manually installed. libsframe1 is already the newest version (2.44-2). libsframe1 set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-4). libgssapi-krb5-2 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libpam-modules-bin is already the newest version (1.7.0-3). perl-base is already the newest version (5.40.1-2). gettext is already the newest version (0.23.1-1). gettext set to manually installed. libcc1-0 is already the newest version (14.2.0-17). libcc1-0 set to manually installed. libngtcp2-dev is already the newest version (1.9.1-1). libngtcp2-dev set to manually installed. libngtcp2-crypto-gnutls-dev is already the newest version (1.9.1-1). libngtcp2-crypto-gnutls-dev set to manually installed. libkadm5clnt-mit12 is already the newest version (1.21.3-4). libkadm5clnt-mit12 set to manually installed. libldap2 is already the newest version (2.6.9+dfsg-1). libldap2 set to manually installed. python3-setuptools is already the newest version (75.8.0-1). python3-setuptools set to manually installed. libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. debhelper is already the newest version (13.24.1). debhelper set to manually installed. libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. ncurses-bin is already the newest version (6.5+20250216-1). init-system-helpers is already the newest version (1.68). libgmp10 is already the newest version (2:6.3.0+dfsg-3). autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. autoconf is already the newest version (2.72-3). autoconf set to manually installed. libgprofng0 is already the newest version (2.44-2). libgprofng0 set to manually installed. grep is already the newest version (3.11-4). libperl5.40 is already the newest version (5.40.1-2). libperl5.40 set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. bash is already the newest version (5.2.37-1.1). binutils-i686-linux-gnu is already the newest version (2.44-2). binutils-i686-linux-gnu set to manually installed. libctf-nobfd0 is already the newest version (2.44-2). libctf-nobfd0 set to manually installed. libctf0 is already the newest version (2.44-2). libctf0 set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-3). libgmpxx4ldbl set to manually installed. base-files is already the newest version (13.6). python3-pkg-resources is already the newest version (75.8.0-1). python3-pkg-resources set to manually installed. xz-utils is already the newest version (5.6.3-1+b1). xz-utils set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-3). libgmp-dev set to manually installed. libmpfr6 is already the newest version (4.2.1-1+b2). libmpfr6 set to manually installed. libsmartcols1 is already the newest version (2.40.4-5). python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. libasan8 is already the newest version (14.2.0-17). libasan8 set to manually installed. python3-dev is already the newest version (3.13.2-1). python3-dev set to manually installed. libdpkg-perl is already the newest version (1.22.15). libdpkg-perl set to manually installed. libpython3.13 is already the newest version (3.13.2-1). libpython3.13 set to manually installed. python3-minimal is already the newest version (3.13.2-1). python3-minimal set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. libkadm5srv-mit12 is already the newest version (1.21.3-4). libkadm5srv-mit12 set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.9-2). libgnutls-dane0t64 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. python3-more-itertools is already the newest version (10.6.0-1). python3-more-itertools set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1). libnghttp2-14 set to manually installed. libuuid1 is already the newest version (2.40.4-5). libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. findutils is already the newest version (4.10.0-3). libattr1 is already the newest version (1:2.5.2-3). libhtscodecs2 is already the newest version (1.6.1-2). libhtscodecs2 set to manually installed. libffi8 is already the newest version (3.4.7-1). libffi8 set to manually installed. libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1). libjs-jquery set to manually installed. libgssrpc4t64 is already the newest version (1.21.3-4). libgssrpc4t64 set to manually installed. libc6-dev is already the newest version (2.40-7). libc6-dev set to manually installed. libexpat1 is already the newest version (2.6.4-1). libexpat1 set to manually installed. libicu72 is already the newest version (72.1-6). libicu72 set to manually installed. libpython3-all-dev is already the newest version (3.13.2-1). libpython3-all-dev set to manually installed. libhts-dev is already the newest version (1.21+ds-1). libhts-dev set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libgomp1 is already the newest version (14.2.0-17). libgomp1 set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b1). python3-all is already the newest version (3.13.2-1). python3-all set to manually installed. m4 is already the newest version (1.4.19-5). m4 set to manually installed. libcap2 is already the newest version (1:2.73-4). patch is already the newest version (2.7.6-7). patch set to manually installed. python3-typing-extensions is already the newest version (4.12.2-2). python3-typing-extensions set to manually installed. gcc-14-base is already the newest version (14.2.0-17). libblkid1 is already the newest version (2.40.4-5). libpam-modules is already the newest version (1.7.0-3). libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libunistring5 is already the newest version (1.3-1). libunistring5 set to manually installed. libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libjs-sphinxdoc is already the newest version (8.1.3-5). libjs-sphinxdoc set to manually installed. gcc-14-i686-linux-gnu is already the newest version (14.2.0-17). gcc-14-i686-linux-gnu set to manually installed. openssl-provider-legacy is already the newest version (3.4.1-1). autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. libudev1 is already the newest version (257.3-1). libstdc++-14-dev is already the newest version (14.2.0-17). libstdc++-14-dev set to manually installed. libsqlite3-0 is already the newest version (3.46.1-1). libsqlite3-0 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.AiNlWFQfEZ (Reading database ... 18318 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.AiNlWFQfEZ I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.AiNlWFQfEZ I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.AiNlWFQfEZ... I: success in 150.2547 seconds Downloading dependency 134 of 255: debianutils:i386=5.21 Downloading dependency 135 of 255: libpython3.13-dev:i386=3.13.2-1 Downloading dependency 136 of 255: libsasl2-modules-db:i386=2.1.28+dfsg1-8+b1 Downloading dependency 137 of 255: libunbound8:i386=1.22.0-1+b1 Downloading dependency 138 of 255: libgcc-14-dev:i386=14.2.0-17 Downloading dependency 139 of 255: hostname:i386=3.25 Downloading dependency 140 of 255: sse2-support:i386=26 Downloading dependency 141 of 255: libngtcp2-16:i386=1.9.1-1 Downloading dependency 142 of 255: libhts3t64:i386=1.21+ds-1 Downloading dependency 143 of 255: libseccomp2:i386=2.5.5-2 Downloading dependency 144 of 255: g++-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 145 of 255: libpam0g:i386=1.7.0-3 Downloading dependency 146 of 255: libbz2-dev:i386=1.0.8-6 Downloading dependency 147 of 255: cpp-14-i686-linux-gnu:i386=14.2.0-17 Downloading dependency 148 of 255: rpcsvc-proto:i386=1.4.3-1 Downloading dependency 149 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--binNMU-changelog= python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for i386; no source changes. * Rebuild with Python 3.13 only -- amd64 / i386 Build Daemon (x86-ubc-02) Wed, 26 Feb 2025 19:36:58 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildBFYIlT/debrebuild.tar.iavjT15LFUM2 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=python-pysam-0.23.0+ds /srv/rebuilderd/tmp/rebuilderdp2CGoQ/inputs/python-pysam_0.23.0+ds-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3 (07 June 2025) on infom08-amd64 +==============================================================================+ | python-pysam 0.23.0+ds-1+b1 (i386) Wed, 23 Jul 2025 21:45:55 +0000 | +==============================================================================+ Package: python-pysam Version: 0.23.0+ds-1+b1 Source Version: 0.23.0+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildBFYIlT/debrebuild.tar.iavjT15LFUM2 to /srv/rebuilderd/tmp/tmp.sbuild.6SgK_knofA... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Wed, 23 Jul 2025 21:45:59 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdp2CGoQ/inputs/python-pysam_0.23.0+ds-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdp2CGoQ/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 23 Jul 2025 21:46:01 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-dVrPlQ/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Wed, 23 Jul 2025 21:46:05 +0000 | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment Wed, 23 Jul 2025 21:46:06 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.35+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.35-1 (2025-07-03) amd64 (x86_64) Toolchain package versions: binutils_2.44-2 dpkg-dev_1.22.15 g++-14_14.2.0-17 gcc-14_14.2.0-17 libc6-dev_2.40-7 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 linux-libc-dev_6.12.16-1 Package versions: autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1.1 bcftools_1.21-1 binutils_2.44-2 binutils-common_2.44-2 binutils-i686-linux-gnu_2.44-2 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-17 cpp-14-i686-linux-gnu_14.2.0-17 cpp-i686-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-2 dash_0.5.12-12 debconf_1.5.89 debhelper_13.24.1 debianutils_5.21 dh-autoreconf_20 dh-python_6.20250108 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 dpkg_1.22.15 dpkg-dev_1.22.15 dwz_0.15-1+b1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-17 g++-14-i686-linux-gnu_14.2.0-17 g++-i686-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-17 gcc-14-base_14.2.0-17 gcc-14-i686-linux-gnu_14.2.0-17 gcc-i686-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 isa-support_26 krb5-multidev_1.21.3-4 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-17 libatomic1_14.2.0-17 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libbinutils_2.44-2 libblkid1_2.40.4-5 libbrotli-dev_1.1.0-2+b6 libbrotli1_1.1.0-2+b6 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-7 libc-dev-bin_2.40-7 libc6_2.40-7 libc6-dev_2.40-7 libcap-ng0_0.8.5-4 libcap2_1:2.73-4 libcc1-0_14.2.0-17 libcom-err2_1.47.2-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-2 libctf0_2.44-2 libcurl3t64-gnutls_8.12.1-3 libcurl4-gnutls-dev_8.12.1-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdeflate-dev_1.23-1+b1 libdeflate0_1.23-1+b1 libdpkg-perl_1.22.15 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.6.4-1 libexpat1-dev_2.6.4-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-17 libgcc-s1_14.2.0-17 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-17 libgprofng0_2.44-2 libgssapi-krb5-2_1.21.3-4 libgssrpc4t64_1.21.3-4 libhogweed6t64_3.10.1-1 libhts-dev_1.21+ds-1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-2 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libidn2-dev_2.3.7-2+b1 libisl23_0.27-1 libitm1_14.2.0-17 libjansson4_2.14-2+b3 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_8.1.3-5 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.21.3-4 libkadm5clnt-mit12_1.21.3-4 libkadm5srv-mit12_1.21.3-4 libkdb5-10t64_1.21.3-4 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-4 libkrb5-dev_1.21.3-4 libkrb5support0_1.21.3-4 libldap-dev_2.6.9+dfsg-1 libldap2_2.6.9+dfsg-1 liblzma-dev_5.6.3-1+b1 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncurses6_6.5+20250216-1 libncursesw6_6.5+20250216-1 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libnghttp3-9_1.6.0-2 libnghttp3-dev_1.6.0-2 libngtcp2-16_1.9.1-1 libngtcp2-crypto-gnutls-dev_1.9.1-1 libngtcp2-crypto-gnutls8_1.9.1-1 libngtcp2-dev_1.9.1-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-all-dev_3.13.2-1 libpython3-dev_3.13.2-1 libpython3-stdlib_3.13.2-1 libpython3.13_3.13.2-1 libpython3.13-dev_3.13.2-1 libpython3.13-minimal_3.13.2-1 libpython3.13-stdlib_3.13.2-1 libquadmath0_14.2.0-17 libreadline8t64_8.2-6 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-8+b1 libsasl2-modules-db_2.1.28+dfsg1-8+b1 libseccomp2_2.5.5-2 libselinux1_3.8-3 libsframe1_2.44-2 libsmartcols1_2.40.4-5 libsqlite3-0_3.46.1-1 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.4.1-1 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 libsystemd0_257.3-1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-1 libtool_2.5.4-3 libubsan1_14.2.0-17 libuchardet0_0.0.8-1+b2 libudev1_257.3-1 libunbound8_1.22.0-1+b1 libunistring5_1.3-1 libuuid1_2.40.4-5 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libzstd-dev_1.5.6+dfsg-2 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.16-1 m4_1.4.19-5 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_12.0.0 ncurses-base_6.5+20250216-1 ncurses-bin_6.5+20250216-1 netbase_6.4 nettle-dev_3.10.1-1 openssl-provider-legacy_3.4.1-1 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.2-1 python3-all_3.13.2-1 python3-all-dev_3.13.2-1 python3-autocommand_2.2.2-3 python3-dev_3.13.2-1 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.2-1 python3-more-itertools_10.6.0-1 python3-packaging_24.2-1 python3-pkg-resources_75.8.0-1 python3-pluggy_1.5.0-1 python3-pytest_8.3.4-1 python3-setuptools_75.8.0-1 python3-typeguard_4.4.2-1 python3-typing-extensions_4.12.2-2 python3-zipp_3.21.0-1 python3.13_3.13.2-1 python3.13-dev_3.13.2-1 python3.13-minimal_3.13.2-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 samtools_1.21-1 sed_4.9-2 sensible-utils_0.0.24 sse2-support_26 sysvinit-utils_3.14-1 tabix_1.21+ds-1 tar_1.35+dfsg-3.1 tzdata_2025a-2 util-linux_2.40.4-5 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Wed, 23 Jul 2025 21:46:06 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pysam Binary: python3-pysam, python-pysam-tests Architecture: any all Version: 0.23.0+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://pysam.readthedocs.org/en/latest Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix , samtools , bcftools , python3-pytest Package-List: python-pysam-tests deb python optional arch=all python3-pysam deb python optional arch=any Checksums-Sha1: d6643c33e0ed4b826b9fe1697c7e4b9a3fe07276 1519052 python-pysam_0.23.0+ds.orig.tar.xz 8d5169d2640519f5b5d265b7988a8a5bb66593ef 10632 python-pysam_0.23.0+ds-1.debian.tar.xz Checksums-Sha256: c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd 1519052 python-pysam_0.23.0+ds.orig.tar.xz 9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440 10632 python-pysam_0.23.0+ds-1.debian.tar.xz Files: 13b8d89edd6fcb0dd9e1316d392a56bc 1519052 python-pysam_0.23.0+ds.orig.tar.xz 0d2415af082e79088a530fe11a211864 10632 python-pysam_0.23.0+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmelKSwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrdPQ//dxdCdaICPj/xp78i9KL3UTutP723 TuffrFwDTFbW+ObV4d9EBlaztS2mCi2Hkfy8ejBa79m6kQQvDHnyQCdTy4exwocJ Z+VCvlXqRH1ZaqgdSFyW1h4z5MxM2uKWEzzGvI5eV+uvHRi1hBmaSujfQIO4hLB7 3M5Dv/9j9pxS4EdGEc0214TeCNSTE1MTXDTi/gqYJ7bdqf9my04vqe6lh46DokmR 03Bdrncht//Ooj56Y8FK2zMbFSZExrP9lCnoC0wWlNSgTnJ8hgy1LkeEjZOB7RD8 BMJ096gvrwGOLC3w3IsulLqVlWkBZk90C1gH2XRM0cYM+ID6yFzJZgNgIJQcdtt5 iMXnGtCFlg8NashNFZMQv4GXSImYbNVprADpohUifzPdrbfmZ9nl3uUYZqe+OPNC uyU3o7YNuMY6JWfFuEfL7TtbYHjVsysqbB/Kk5vVVCttPYozyFG5lEKgb473Kt5Z M7Rt1ECBhHFQoBOPVFzfzbO2nrxn1DvwFE0nJQGBiMB51jBb+YRVQuHb+Z/uVf7T rMcZe5KvSiuOqO2Ysw+gk39MnldHBAbR0n7B+hLoV0TyP0x8Q0YRvZTuuoJWrZ/1 rAPh4J6T/C1EpJq4aCP1nkQK7Te9FQfNd1GzdRINzxxBL5ozTr/62gl09t3nVcpZ cydUysljHDlgHQw= =3oqI -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./python-pysam_0.23.0+ds-1.dsc: unsupported subcommand dpkg-source: info: extracting python-pysam in /build/reproducible-path/python-pysam-0.23.0+ds dpkg-source: info: unpacking python-pysam_0.23.0+ds.orig.tar.xz dpkg-source: info: unpacking python-pysam_0.23.0+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_remote.patch dpkg-source: info: applying clean_less dpkg-source: info: applying skip-test-on-32-bit.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 0.23.0+ds-1+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1740598618 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package python-pysam dpkg-buildpackage: info: source version 0.23.0+ds-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-ubc-02) dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean cd tests/pysam_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running clean removing '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -f \ pysam/config.py \ pysam/config.h \ pysam/lib*.c \ samtools/config.h \ bcftools/config.h rm -rf pysam.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running build running build_py creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include running egg_info creating pysam.egg-info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt writing manifest file 'pysam.egg-info/SOURCES.txt' reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension creating build/temp.linux-i686-cpython-313/pysam i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/htslib_util.c -o build/temp.linux-i686-cpython-313/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libchtslib.c -o build/temp.linux-i686-cpython-313/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libchtslib.c:2924:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2924 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/htslib_util.o build/temp.linux-i686-cpython-313/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-i686-cpython-313/samtools creating build/temp.linux-i686-cpython-313/samtools/lz4 i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcsamtools.c -o build/temp.linux-i686-cpython-313/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_color.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_import.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_index.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_md.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_split.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bamtk.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bedcov.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bedidx.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/coverage.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/cram_size.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/cut_target.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/dict.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/faidx.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/lz4/lz4.c -o build/temp.linux-i686-cpython-313/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/padding.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/phase.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/reference.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/reset.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_view.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sample.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/samtools.pysam.c -o build/temp.linux-i686-cpython-313/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/stats.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-i686-cpython-313/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcsamtools.o build/temp.linux-i686-cpython-313/samtools/amplicon_stats.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam2depth.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_addrprg.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_aux.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_cat.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_color.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_consensus.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_fastq.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_flags.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_import.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_index.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_lpileup.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_markdup.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_mate.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_md.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_plbuf.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_plcmd.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_quickcheck.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_reheader.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_rmdup.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_rmdupse.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_samples.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_sort.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_split.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bam_stat.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bamshuf.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bamtk.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bedcov.c.pysam.o build/temp.linux-i686-cpython-313/samtools/bedidx.c.pysam.o build/temp.linux-i686-cpython-313/samtools/consensus_pileup.c.pysam.o build/temp.linux-i686-cpython-313/samtools/coverage.c.pysam.o build/temp.linux-i686-cpython-313/samtools/cram_size.c.pysam.o build/temp.linux-i686-cpython-313/samtools/cut_target.c.pysam.o build/temp.linux-i686-cpython-313/samtools/dict.c.pysam.o build/temp.linux-i686-cpython-313/samtools/faidx.c.pysam.o build/temp.linux-i686-cpython-313/samtools/lz4/lz4.o build/temp.linux-i686-cpython-313/samtools/padding.c.pysam.o build/temp.linux-i686-cpython-313/samtools/phase.c.pysam.o build/temp.linux-i686-cpython-313/samtools/reference.c.pysam.o build/temp.linux-i686-cpython-313/samtools/reset.c.pysam.o build/temp.linux-i686-cpython-313/samtools/sam_opts.c.pysam.o build/temp.linux-i686-cpython-313/samtools/sam_utils.c.pysam.o build/temp.linux-i686-cpython-313/samtools/sam_view.c.pysam.o build/temp.linux-i686-cpython-313/samtools/sample.c.pysam.o build/temp.linux-i686-cpython-313/samtools/samtools.pysam.o build/temp.linux-i686-cpython-313/samtools/stats.c.pysam.o build/temp.linux-i686-cpython-313/samtools/stats_isize.c.pysam.o build/temp.linux-i686-cpython-313/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-i686-cpython-313/bcftools i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/HMM.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/abuf.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bcftools.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bin.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/ccall.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/cols.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/consensus.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/convert.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/csq.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/dist.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/edlib.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/em.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/extsort.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/filter.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/gff.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/hclust.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/kmin.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/main.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/mcall.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/prob1.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/regidx.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/reheader.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/tabix.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/version.c.pysam.c -o build/temp.linux-i686-cpython-313/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbcftools.c -o build/temp.linux-i686-cpython-313/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/bcftools/HMM.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/abuf.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/bam2bcf.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/bam_sample.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/bcftools.pysam.o build/temp.linux-i686-cpython-313/bcftools/bin.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/ccall.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/cols.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/consensus.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/convert.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/csq.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/dist.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/edlib.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/em.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/extsort.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/filter.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/gff.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/gvcf.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/hclust.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/kmin.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/main.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/mcall.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/mpileup.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/ploidy.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/prob1.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/read_consensus.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/regidx.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/reheader.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/smpl_ilist.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/str_finder.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/tabix.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/tsv2vcf.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfannotate.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfbuf.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfcall.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfcnv.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfconcat.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfconvert.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcffilter.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfhead.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfindex.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfisec.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfmerge.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfnorm.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfplugin.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfquery.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfroh.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfsom.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfsort.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfstats.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcfview.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/vcmp.c.pysam.o build/temp.linux-i686-cpython-313/bcftools/version.c.pysam.o build/temp.linux-i686-cpython-313/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcutils.c -o build/temp.linux-i686-cpython-313/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcutils.c:2473:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2473 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/pysam_util.c -o build/temp.linux-i686-cpython-313/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcutils.o build/temp.linux-i686-cpython-313/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcsamtools.cpython-313-i386-linux-gnu -lcbcftools.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2567:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2572:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2577:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2616:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2621:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2626:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcalignmentfile.c -o build/temp.linux-i686-cpython-313/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcalignmentfile.c:3785:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3785 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’: pysam/libcalignmentfile.c:20533:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20533 | (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’: pysam/libcalignmentfile.c:37169:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37169 | (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcsamfile.c -o build/temp.linux-i686-cpython-313/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcsamfile.c:3296:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3296 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcalignedsegment.c -o build/temp.linux-i686-cpython-313/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcalignedsegment.c:4315:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 4315 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libctabix.c -o build/temp.linux-i686-cpython-313/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libctabix.c:3568:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3568 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcfaidx.c -o build/temp.linux-i686-cpython-313/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcfaidx.c:3030:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3030 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbcf.c -o build/temp.linux-i686-cpython-313/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcbcf.c:4107:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 4107 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’: pysam/libcbcf.c:85824:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85824 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’: pysam/libcbcf.c:80500:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80500 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’: pysam/libcbcf.c:44209:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44209 | bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c:44235:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44235 | bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’: pysam/libcbcf.c:80195:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80195 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbgzf.c -o build/temp.linux-i686-cpython-313/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcbgzf.c:2482:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2482 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libctabixproxies.c -o build/temp.linux-i686-cpython-313/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libctabixproxies.c:3086:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3086 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcvcf.c -o build/temp.linux-i686-cpython-313/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcvcf.c:3697:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3697 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/i386-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/i386-linux-gnu -lz -lhts -lchtslib.cpython-313-i386-linux-gnu -lcutils.cpython-313-i386-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-i386-linux-gnu.so -Wl,-rpath,$ORIGIN debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds' cd tests/pysam_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' samtools faidx ex1.fa samtools view --no-PG -bo ex1.bam -t ex1.fa.fai ex1.sam.gz samtools mpileup -f ex1.fa ex1.bam | gzip > ex1.pileup.gz [mpileup] 1 samples in 1 input files gunzip < ex1.sam.gz > ex1.sam samtools index ex1.bam samtools view --no-PG -h ex1.bam | gzip > ex2.sam.gz gunzip < ex2.sam.gz > ex2.sam samtools view --no-PG -bo ex2.bam ex2.sam samtools index ex2.bam samtools calmd --no-PG --output-fmt BAM ex2.bam ex1.fa > with_md.sam.gz [bam_fillmd1] different NM for read 'EAS139_11:7:46:695:738': 3 -> 8 [bam_fillmd1] different NM for read 'EAS218_4:1:48:9:409': 0 -> 5 [bam_fillmd1] different NM for read 'B7_591:7:200:192:373': 0 -> 5 [bam_fillmd1] different NM for read 'EAS56_65:1:163:846:223': 0 -> 5 [bam_fillmd1] different NM for read 'EAS114_30:7:283:799:560': 0 -> 5 [bam_fillmd1] different NM for read 'B7_595:4:84:802:737': 0 -> 4 [bam_fillmd1] different NM for read 'EAS51_66:5:308:400:602': 0 -> 3 [bam_fillmd1] different NM for read 'EAS54_81:2:285:367:932': 0 -> 3 [bam_fillmd1] different NM for read 'EAS114_39:1:70:147:84': 0 -> 3 [bam_fillmd1] different NM for read 'EAS56_53:1:124:243:35': 2 -> 5 [bam_fillmd1] different NM for read 'EAS1_103:2:226:302:758': 2 -> 3 [bam_fillmd1] different NM for read 'EAS114_28:6:175:705:982': 1 -> 0 [bam_fillmd1] different NM for read 'EAS51_64:4:179:389:585': 7 -> 8 [bam_fillmd1] different NM for read 'B7_589:1:122:337:968': 3 -> 2 [bam_fillmd1] different NM for read 'B7_610:4:15:805:420': 4 -> 5 [bam_fillmd1] different NM for read 'B7_591:2:279:124:41': 2 -> 4 [bam_fillmd1] different NM for read 'EAS112_32:8:89:254:332': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:7:103:731:697': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_11:2:71:83:58': 0 -> 2 [bam_fillmd1] different NM for read 'EAS192_3:4:63:5:870': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:29:1822:1881': 0 -> 2 [bam_fillmd1] different NM for read 'EAS188_7:3:15:568:42': 2 -> 1 [bam_fillmd1] different NM for read 'EAS1_95:4:176:971:874': 0 -> 1 [bam_fillmd1] different NM for read 'EAS1_99:1:34:649:318': 3 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:4:61:346:384': 3 -> 4 [bam_fillmd1] different NM for read 'B7_597:6:20:592:496': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:4:38:999:463': 2 -> 1 [bam_fillmd1] different NM for read 'EAS114_28:5:23:944:377': 0 -> 3 [bam_fillmd1] different NM for read 'EAS219_1:3:90:219:528': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_108:5:89:942:84': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:6:159:493:275': 0 -> 5 [bam_fillmd1] different NM for read 'EAS139_11:1:81:1019:558': 0 -> 5 [bam_fillmd1] different NM for read 'EAS51_62:7:162:195:761': 0 -> 4 [bam_fillmd1] different NM for read 'B7_597:3:115:646:430': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:243:209:110': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:2:266:994:429': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:5:32:461:154': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:6:7:492:1088': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_95:6:174:650:125': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:6:89:457:591': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_39:2:38:670:564': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_7:4:92:693:228': 1 -> 6 [bam_fillmd1] different NM for read 'EAS218_1:4:61:1369:440': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_26:4:123:1001:580': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:4:10:1312:1558': 0 -> 4 [bam_fillmd1] different NM for read 'EAS220_1:8:45:178:1321': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:5:125:137:58': 0 -> 4 [bam_fillmd1] different NM for read 'EAS192_3:3:285:349:797': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_45:5:56:1757:1319': 0 -> 4 [bam_fillmd1] different NM for read 'B7_591:3:291:404:199': 0 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:7:159:253:353': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_57:1:122:38:103': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_4:5:103:870:105': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:8:24:718:322': 3 -> 7 [bam_fillmd1] different NM for read 'EAS51_64:6:118:41:489': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_61:3:165:665:220': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:238:803:383': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:3:232:364:583': 0 -> 3 [bam_fillmd1] different NM for read 'B7_595:2:29:729:70': 3 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:220:809:850': 4 -> 6 [bam_fillmd1] different NM for read 'EAS54_65:2:264:157:150': 3 -> 5 [bam_fillmd1] different NM for read 'B7_595:8:26:242:35': 2 -> 1 [bam_fillmd1] different NM for read 'B7_610:7:34:144:868': 4 -> 5 [bam_fillmd1] different NM for read 'B7_597:8:147:360:141': 1 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:82:154:1333': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_63:3:41:468:459': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_97:4:274:287:423': 0 -> 1 [bam_fillmd1] different NM for read 'EAS114_30:2:303:428:326': 0 -> 1 [bam_fillmd1] different NM for read 'EAS54_71:8:105:854:975': 0 -> 3 gunzip < with_md.sam.gz > with_md.sam samtools view --no-PG -bo with_md.bam with_md.sam [W::bam_hdr_read] EOF marker is absent. The input is probably truncated samtools index with_md.bam samtools view --no-PG -bu -o uncompressed.bam ex2.sam samtools view --no-PG -bo MM-chebi.bam MM-chebi.sam samtools view --no-PG -bo MM-double.bam MM-double.sam samtools view --no-PG -bo MM-explicit.bam MM-explicit.sam samtools view --no-PG -bo MM-multi.bam MM-multi.sam samtools view --no-PG -bo MM-orient.bam MM-orient.sam samtools view --no-PG -bo ex10.bam ex10.sam samtools view --no-PG -bo ex3.bam ex3.sam samtools view --no-PG -bo ex4.bam ex4.sam samtools view --no-PG -bo ex5.bam ex5.sam samtools view --no-PG -bo ex6.bam ex6.sam samtools view --no-PG -bo ex8.bam ex8.sam samtools view --no-PG -bo ex9_fail.bam ex9_fail.sam samtools view --no-PG -bo ex9_nofail.bam ex9_nofail.sam samtools view --no-PG -bo ex_spliced.bam ex_spliced.sam samtools view --no-PG -bo example_aligned_pairs.bam example_aligned_pairs.sam samtools view --no-PG -bo example_btag.bam example_btag.sam samtools view --no-PG -bo example_dash_in_chr.bam example_dash_in_chr.sam samtools view --no-PG -bo example_empty_header.bam example_empty_header.sam samtools view --no-PG -bo example_empty_with_header.bam example_empty_with_header.sam samtools view --no-PG -bo example_reverse_complement.bam example_reverse_complement.sam touch tmp.list samtools view --no-PG -bo example_unmapped_reads_no_sq.bam -t tmp.list example_unmapped_reads_no_sq.sam rm -f tmp.list samtools view --no-PG -bo issue100.bam issue100.sam samtools view --no-PG -bo rg_with_tab.bam rg_with_tab.sam samtools view --no-PG -bo softclip.bam softclip.sam samtools view --no-PG -bo tag_bug.bam tag_bug.sam samtools view --no-PG -bo test_mapped_unmapped.bam test_mapped_unmapped.sam samtools view --no-PG -bo test_query_position.bam test_query_position.sam samtools view --no-PG -bo test_unaligned.bam test_unaligned.sam samtools index MM-chebi.bam samtools index MM-double.bam samtools index MM-explicit.bam samtools index MM-multi.bam samtools index MM-orient.bam samtools index ex10.bam samtools index ex3.bam samtools index ex4.bam samtools index ex5.bam samtools index ex6.bam samtools index ex8.bam samtools index ex9_fail.bam samtools index ex9_nofail.bam samtools index ex_spliced.bam samtools index example_aligned_pairs.bam samtools index example_btag.bam samtools index example_dash_in_chr.bam samtools index example_empty_header.bam samtools index example_empty_with_header.bam samtools index example_reverse_complement.bam samtools index example_unmapped_reads_no_sq.bam samtools index issue100.bam samtools index rg_with_tab.bam samtools index softclip.bam samtools index tag_bug.bam samtools index test_mapped_unmapped.bam samtools index test_query_position.bam samtools index test_unaligned.bam samtools view --no-PG -Co ex1.cram -T ex1.fa ex1.sam samtools view --no-PG -Co ex2.cram -T ex1.fa ex2.sam samtools view --no-PG -Co ex3.cram -T ex1.fa ex3.sam samtools index ex1.cram samtools index ex2.cram samtools index ex3.cram cp ex1.bam example_bai.bam samtools index example_bai.bam mv example_bai.bam.bai example_bai.bai dd if=ex2.bam of=ex2_truncated.bam bs=$((`wc -c < ex2.bam`-512)) count=1 1+0 records in 1+0 records out 122288 bytes (122 kB, 119 KiB) copied, 0.000287646 s, 425 MB/s (bgzip -d < ex2.bam; printf '\37\0\0\0\1\0\0\0') | bgzip > ex2_corrupt.bam grep "^@" ex2.sam | samtools view --no-PG -bo empty.bam - samtools index empty.bam cp ex1.bam explicit_index.bam cp ex1.cram explicit_index.cram gzip < faidx_empty_seq.fq > faidx_empty_seq.fq.gz bgzip < ex1.fa > ex1.fa.gz samtools faidx ex1.fa.gz cp ex1.bam ex1_csi.bam samtools index -c ex1_csi.bam touch all.stamp rm with_md.sam make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' bgzip < example_vcf40.vcf > example_vcf40.vcf.gz tabix -f -p vcf example_vcf40.vcf.gz # create tbi index bcftools index -f example_vcf40.vcf.gz # create csi index bgzip < example_vcf42.vcf > example_vcf42.vcf.gz tabix -f -p vcf example_vcf42.vcf.gz # create tbi index bcftools index -f example_vcf42.vcf.gz # create csi index bgzip < example_vcf42_only_header.vcf > example_vcf42_only_header.vcf.gz tabix -f -p vcf example_vcf42_only_header.vcf.gz # create tbi index bcftools index -f example_vcf42_only_header.vcf.gz # create csi index bgzip < example_vcf42_withcontigs.vcf > example_vcf42_withcontigs.vcf.gz tabix -f -p vcf example_vcf42_withcontigs.vcf.gz # create tbi index bcftools index -f example_vcf42_withcontigs.vcf.gz # create csi index bgzip < example_vcf43.vcf > example_vcf43.vcf.gz tabix -f -p vcf example_vcf43.vcf.gz # create tbi index bcftools index -f example_vcf43.vcf.gz # create csi index bgzip < example_vcf43_with_utf8.vcf > example_vcf43_with_utf8.vcf.gz tabix -f -p vcf example_vcf43_with_utf8.vcf.gz # create tbi index bcftools index -f example_vcf43_with_utf8.vcf.gz # create csi index bgzip < gnomad.vcf > gnomad.vcf.gz tabix -f -p vcf gnomad.vcf.gz # create tbi index bcftools index -f gnomad.vcf.gz # create csi index bgzip < gnomad_fixed.vcf > gnomad_fixed.vcf.gz tabix -f -p vcf gnomad_fixed.vcf.gz # create tbi index bcftools index -f gnomad_fixed.vcf.gz # create csi index bgzip < missing_genotypes.vcf > missing_genotypes.vcf.gz tabix -f -p vcf missing_genotypes.vcf.gz # create tbi index bcftools index -f missing_genotypes.vcf.gz # create csi index bcftools view -O b example_vcf40.vcf.gz -o example_vcf40.bcf bcftools index -f example_vcf40.bcf bcftools view -O b example_vcf42.vcf.gz -o example_vcf42.bcf bcftools index -f example_vcf42.bcf bcftools view -O b example_vcf42_only_header.vcf.gz -o example_vcf42_only_header.bcf bcftools index -f example_vcf42_only_header.bcf bcftools view -O b example_vcf42_withcontigs.vcf.gz -o example_vcf42_withcontigs.bcf bcftools index -f example_vcf42_withcontigs.bcf bcftools view -O b example_vcf43.vcf.gz -o example_vcf43.bcf bcftools index -f example_vcf43.bcf bcftools view -O b example_vcf43_with_utf8.vcf.gz -o example_vcf43_with_utf8.bcf bcftools index -f example_vcf43_with_utf8.bcf bcftools view -O b gnomad.vcf.gz -o gnomad.bcf bcftools index -f gnomad.bcf bcftools view -O b gnomad_fixed.vcf.gz -o gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools index -f gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools view -O b missing_genotypes.vcf.gz -o missing_genotypes.bcf bcftools index -f missing_genotypes.bcf touch all.stamp make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pysam-0.23.0+ds configfile: setup.cfg plugins: typeguard-4.4.2 collecting ... collected 960 items / 1 skipped tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testStrOfEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateTlen PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_mapped_reads_are_updated PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_unmapped_reads_ignore_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_equivalence_matches_only_and_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_1character_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_bad_type_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_hard_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_lowercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_match_mismatch PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_via_cigarstring PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip_reference PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_soft_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_uppercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_with_malformed_MD_tag PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_header_accessible PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_query_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_read_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_query_length_is_limited PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_equal PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestCigar::testCigar PASSED tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED tests/AlignedSegment_test.py::TestBaseModifications::testDouble PASSED tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED tests/AlignedSegment_test.py::TestBaseModifications::testMulti PASSED tests/AlignedSegment_test.py::TestBaseModifications::testOrient PASSED tests/AlignedSegment_test.py::TestTags::testAddTags PASSED tests/AlignedSegment_test.py::TestTags::testAddTagsType PASSED tests/AlignedSegment_test.py::TestTags::testArrayTags PASSED tests/AlignedSegment_test.py::TestTags::testEmptyTag PASSED tests/AlignedSegment_test.py::TestTags::testLongTags PASSED tests/AlignedSegment_test.py::TestTags::testMDTagComplex PASSED tests/AlignedSegment_test.py::TestTags::testMDTagDeletions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagInsertions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED tests/AlignedSegment_test.py::TestTags::testMDTagRefSkipping PASSED tests/AlignedSegment_test.py::TestTags::testMDTagSoftClipping PASSED tests/AlignedSegment_test.py::TestTags::testMissingTag PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegersWrittenToFile PASSED tests/AlignedSegment_test.py::TestTags::testSetTag PASSED tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED tests/AlignedSegment_test.py::TestCopy::testCopy PASSED tests/AlignedSegment_test.py::TestCopy::testDeepCopy PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_5wrzr5ng' PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575 [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_h_l9gv7q' PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2BAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2SAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED tests/AlignmentFile_test.py::TestIO::testHead PASSED tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2CRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testCRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED tests/AlignmentFile_test.py::TestClipping::testClipping PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED tests/AlignmentFile_test.py::TestContextManager::testManager PASSED tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated [E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094 [E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes PASSED tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory PASSED tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED tests/VariantFile_test.py::TestHeader::testIterator PASSED tests/VariantFile_test.py::TestHeader::testStr PASSED tests/VariantFile_test.py::TestParsing::testAlleles PASSED tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED tests/VariantFile_test.py::TestParsing::testAlt PASSED tests/VariantFile_test.py::TestParsing::testChrom PASSED tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED tests/VariantFile_test.py::TestParsing::testFilter PASSED tests/VariantFile_test.py::TestParsing::testFormat PASSED tests/VariantFile_test.py::TestParsing::testId PASSED tests/VariantFile_test.py::TestParsing::testInfo PASSED tests/VariantFile_test.py::TestParsing::testPos PASSED tests/VariantFile_test.py::TestParsing::testQual PASSED tests/VariantFile_test.py::TestParsing::testRef PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED tests/VariantFile_test.py::TestParsing::testStart PASSED tests/VariantFile_test.py::TestParsing::testStop PASSED tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) (0, 0) PASSED tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_y_98qm_7.bcf' PASSED tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_set_sample_alleles PASSED tests/VariantRecord_test.py::test_repeated_new_record PASSED tests/compile_test.py::test_bam SKIPPED (no pyximport) tests/compile_test.py::test_gtf SKIPPED (no pyximport) tests/faidx_test.py::TestFastaFile::testFetch PASSED tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED tests/faidx_test.py::TestFastaFile::testLength PASSED tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED tests/faidx_test.py::TestFastxFileFastq::testManager PASSED tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED tests/faidx_test.py::TestFastqFileFastq::testManager PASSED tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED tests/faidx_test.py::TestFastxFileFasta::testManager PASSED tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED tests/samtools_test.py::SamtoolsTest::testStatements PASSED tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...) tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED tests/samtools_test.py::TestReturnType::testReturnValueData PASSED tests/samtools_test.py::TestReturnType::testReturnValueString PASSED tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED tests/samtools_test.py::StdoutTest::testSaveStdout PASSED tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED tests/samtools_test.py::PysamTest::testStatements PASSED tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...) tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED tests/tabix_test.py::TestCompression::testCompression PASSED tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionSam::testCompression PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionBed::testCompression PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionVCF::testCompression PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestGZFile::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED tests/tabix_test.py::TestIterationWithComments::testAll PASSED tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithComments::testHeader PASSED tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithComments::testReopening PASSED tests/tabix_test.py::TestIterators::testClosedFile PASSED tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED tests/tabix_test.py::TestIterators::testIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED tests/tabix_test.py::TestBed::testRead PASSED tests/tabix_test.py::TestBed::testWrite PASSED tests/tabix_test.py::TestUnicode::testFromTabix PASSED tests/tabix_test.py::TestUnicode::testFromVCF PASSED tests/tabix_test.py::TestVCFFromTabix::testRead PASSED tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting [W::bcf_hdr_check_sanity] GL should be declared as Number=G PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs: #CHROM POS ID REF ALT QUAL FILTER INFO PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED tests/tabix_test.py::TestMultipleIterators::testScope PASSED tests/tabix_test.py::TestContextManager::testManager PASSED tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testCopy PASSED tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestParser::testRead PASSED tests/tabixproxies_test.py::TestParser::testUnset PASSED tests/tabixproxies_test.py::TestParser::testWrite PASSED tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGTF::testCopy PASSED tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGTF::testRead PASSED tests/tabixproxies_test.py::TestGTF::testUnset PASSED tests/tabixproxies_test.py::TestGTF::testWrite PASSED tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGFF3::testCopy PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGFF3::testRead PASSED tests/tabixproxies_test.py::TestGFF3::testUnset PASSED tests/tabixproxies_test.py::TestGFF3::testWrite PASSED tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED tests/test_samtools_python.py::test_bedcov_split_lines PASSED tests/test_samtools_python.py::test_idxstats_parse PASSED tests/test_samtools_python.py::test_bedcov PASSED ======================= 947 passed, 14 skipped in 22.90s ======================= make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension running install_lib creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/samtools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/bcftools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/config.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/Pileup.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/config.py to config.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/samtools.py to samtools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/Pileup.py to Pileup.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/bcftools.py to bcftools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam-0.23.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds' cd tests/pysam_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh_install -Xtest.gtf.gz find debian -name log.txt -delete find debian -name LICENSE -delete make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-313-i386-linux-gnu.so: DWARF compression not beneficial - old size 1431373 new size 1446997 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-pysam' in '../python3-pysam_0.23.0+ds-1+b1_i386.deb'. dpkg-deb: building package 'python3-pysam-dbgsym' in '../python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb'. dpkg-genbuildinfo --build=any -O../python-pysam_0.23.0+ds-1+b1_i386.buildinfo dpkg-genchanges --build=any -O../python-pysam_0.23.0+ds-1+b1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-07-23T21:50:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 23 Jul 2025 21:50:41 +0000 | +------------------------------------------------------------------------------+ python-pysam_0.23.0+ds-1+b1_i386.changes: ----------------------------------------- Format: 1.8 Date: Wed, 26 Feb 2025 19:36:58 +0000 Source: python-pysam (0.23.0+ds-1) Binary: python3-pysam python3-pysam-dbgsym Binary-Only: yes Architecture: i386 Version: 0.23.0+ds-1+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: amd64 / i386 Build Daemon (x86-ubc-02) Description: python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Changes: python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for i386; no source changes. * Rebuild with Python 3.13 only Checksums-Sha1: f12972aaa08920bf78da413094a764a70783a1e5 8654 python-pysam_0.23.0+ds-1+b1_i386.buildinfo eb85814536f06c77e98b898730e80e5608a830c5 8931416 python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb 60fd87055ea2fc0b2c4c7b3b383626bee26c85fb 3665344 python3-pysam_0.23.0+ds-1+b1_i386.deb Checksums-Sha256: 976df91b428a16eb975b30551b61c9c0232276e5e3bba4c8db8fc99078098926 8654 python-pysam_0.23.0+ds-1+b1_i386.buildinfo 60c4111fa2e6ae91c6aac820e479e3fabc03345f05a3fe2a9f599ebd62bc54cb 8931416 python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb 081f2894bb6fb486af7160a90e81cb203fc18cacd747f077fd6cced1ccd00d84 3665344 python3-pysam_0.23.0+ds-1+b1_i386.deb Files: ec473f09b54d62cfb7cd02e60ee42e3a 8654 python optional python-pysam_0.23.0+ds-1+b1_i386.buildinfo f2d9d12bc443f433bbdb69e91eba9008 8931416 debug optional python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb ff6b899b592ef1efb1ca8e576c11f24a 3665344 python optional python3-pysam_0.23.0+ds-1+b1_i386.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 23 Jul 2025 21:50:42 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-pysam (0.23.0+ds-1) Binary: python3-pysam python3-pysam-dbgsym Architecture: i386 Version: 0.23.0+ds-1+b1 Binary-Only-Changes: python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for i386; no source changes. * Rebuild with Python 3.13 only . -- amd64 / i386 Build Daemon (x86-ubc-02) Wed, 26 Feb 2025 19:36:58 +0000 Checksums-Md5: f2d9d12bc443f433bbdb69e91eba9008 8931416 python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb ff6b899b592ef1efb1ca8e576c11f24a 3665344 python3-pysam_0.23.0+ds-1+b1_i386.deb Checksums-Sha1: eb85814536f06c77e98b898730e80e5608a830c5 8931416 python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb 60fd87055ea2fc0b2c4c7b3b383626bee26c85fb 3665344 python3-pysam_0.23.0+ds-1+b1_i386.deb Checksums-Sha256: 60c4111fa2e6ae91c6aac820e479e3fabc03345f05a3fe2a9f599ebd62bc54cb 8931416 python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb 081f2894bb6fb486af7160a90e81cb203fc18cacd747f077fd6cced1ccd00d84 3665344 python3-pysam_0.23.0+ds-1+b1_i386.deb Build-Origin: Debian Build-Architecture: i386 Build-Date: Wed, 23 Jul 2025 21:50:40 +0000 Build-Path: /build/reproducible-path/python-pysam-0.23.0+ds Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.6), base-passwd (= 3.6.6), bash (= 5.2.37-1.1), bcftools (= 1.21-1), binutils (= 2.44-2), binutils-common (= 2.44-2), binutils-i686-linux-gnu (= 2.44-2), bsdextrautils (= 2.40.4-5), bsdutils (= 1:2.40.4-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-1), coreutils (= 9.5-1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-17), cpp-14-i686-linux-gnu (= 14.2.0-17), cpp-i686-linux-gnu (= 4:14.2.0-1), cython3 (= 3.0.11+dfsg-2), dash (= 0.5.12-12), debconf (= 1.5.89), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-python (= 6.20250108), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-2), dpkg (= 1.22.15), dpkg-dev (= 1.22.15), dwz (= 0.15-1+b1), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-17), g++-14-i686-linux-gnu (= 14.2.0-17), g++-i686-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-17), gcc-14-base (= 14.2.0-17), gcc-14-i686-linux-gnu (= 14.2.0-17), gcc-i686-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), isa-support (= 26), krb5-multidev (= 1.21.3-4), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-17), libatomic1 (= 14.2.0-17), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b1), libbinutils (= 2.44-2), libblkid1 (= 2.40.4-5), libbrotli-dev (= 1.1.0-2+b6), libbrotli1 (= 1.1.0-2+b6), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.40-7), libc-dev-bin (= 2.40-7), libc6 (= 2.40-7), libc6-dev (= 2.40-7), libcap-ng0 (= 0.8.5-4), libcap2 (= 1:2.73-4), libcc1-0 (= 14.2.0-17), libcom-err2 (= 1.47.2-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-2), libctf0 (= 2.44-2), libcurl3t64-gnutls (= 8.12.1-3), libcurl4-gnutls-dev (= 8.12.1-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdeflate-dev (= 1.23-1+b1), libdeflate0 (= 1.23-1+b1), libdpkg-perl (= 1.22.15), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.6.4-1), libexpat1-dev (= 2.6.4-1), libffi8 (= 3.4.7-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-14-dev (= 14.2.0-17), libgcc-s1 (= 14.2.0-17), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-17), libgprofng0 (= 2.44-2), libgssapi-krb5-2 (= 1.21.3-4), libgssrpc4t64 (= 1.21.3-4), libhogweed6t64 (= 3.10.1-1), libhts-dev (= 1.21+ds-1), libhts3t64 (= 1.21+ds-1), libhtscodecs2 (= 1.6.1-2), libicu72 (= 72.1-6), libidn2-0 (= 2.3.7-2+b1), libidn2-dev (= 2.3.7-2+b1), libisl23 (= 0.27-1), libitm1 (= 14.2.0-17), libjansson4 (= 2.14-2+b3), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 8.1.3-5), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.21.3-4), libkadm5clnt-mit12 (= 1.21.3-4), libkadm5srv-mit12 (= 1.21.3-4), libkdb5-10t64 (= 1.21.3-4), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-4), libkrb5-dev (= 1.21.3-4), libkrb5support0 (= 1.21.3-4), libldap-dev (= 2.6.9+dfsg-1), libldap2 (= 2.6.9+dfsg-1), liblzma-dev (= 5.6.3-1+b1), liblzma5 (= 5.6.3-1+b1), libmagic-mgc (= 1:5.45-3+b1), libmagic1t64 (= 1:5.45-3+b1), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.4-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libncurses6 (= 6.5+20250216-1), libncursesw6 (= 6.5+20250216-1), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1), libnghttp2-dev (= 1.64.0-1), libnghttp3-9 (= 1.6.0-2), libnghttp3-dev (= 1.6.0-2), libngtcp2-16 (= 1.9.1-1), libngtcp2-crypto-gnutls-dev (= 1.9.1-1), libngtcp2-crypto-gnutls8 (= 1.9.1-1), libngtcp2-dev (= 1.9.1-1), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-2), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-all-dev (= 3.13.2-1), libpython3-dev (= 3.13.2-1), libpython3-stdlib (= 3.13.2-1), libpython3.13 (= 3.13.2-1), libpython3.13-dev (= 3.13.2-1), libpython3.13-minimal (= 3.13.2-1), libpython3.13-stdlib (= 3.13.2-1), libquadmath0 (= 14.2.0-17), libreadline8t64 (= 8.2-6), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-8+b1), libsasl2-modules-db (= 2.1.28+dfsg1-8+b1), libseccomp2 (= 2.5.5-2), libselinux1 (= 3.8-3), libsframe1 (= 2.44-2), libsmartcols1 (= 2.40.4-5), libsqlite3-0 (= 3.46.1-1), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.4.1-1), libssl3t64 (= 3.4.1-1), libstdc++-14-dev (= 14.2.0-17), libstdc++6 (= 14.2.0-17), libsystemd0 (= 257.3-1), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-1), libtool (= 2.5.4-3), libubsan1 (= 14.2.0-17), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.3-1), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-5), libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1), libzstd-dev (= 1.5.6+dfsg-2), libzstd1 (= 1.5.6+dfsg-2), linux-libc-dev (= 6.12.16-1), m4 (= 1.4.19-5), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), media-types (= 12.0.0), ncurses-base (= 6.5+20250216-1), ncurses-bin (= 6.5+20250216-1), netbase (= 6.4), nettle-dev (= 3.10.1-1), openssl-provider-legacy (= 3.4.1-1), patch (= 2.7.6-7), perl (= 5.40.1-2), perl-base (= 5.40.1-2), perl-modules-5.40 (= 5.40.1-2), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.2-1), python3-all (= 3.13.2-1), python3-all-dev (= 3.13.2-1), python3-autocommand (= 2.2.2-3), python3-dev (= 3.13.2-1), python3-inflect (= 7.3.1-2), python3-iniconfig (= 1.1.1-2), python3-jaraco.context (= 6.0.0-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.2-1), python3-more-itertools (= 10.6.0-1), python3-packaging (= 24.2-1), python3-pkg-resources (= 75.8.0-1), python3-pluggy (= 1.5.0-1), python3-pytest (= 8.3.4-1), python3-setuptools (= 75.8.0-1), python3-typeguard (= 4.4.2-1), python3-typing-extensions (= 4.12.2-2), python3-zipp (= 3.21.0-1), python3.13 (= 3.13.2-1), python3.13-dev (= 3.13.2-1), python3.13-minimal (= 3.13.2-1), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), samtools (= 1.21-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sse2-support (= 26), sysvinit-utils (= 3.14-1), tabix (= 1.21+ds-1), tar (= 1.35+dfsg-3.1), tzdata (= 2025a-2), util-linux (= 2.40.4-5), xz-utils (= 5.6.3-1+b1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1740598618" +------------------------------------------------------------------------------+ | Package contents Wed, 23 Jul 2025 21:50:42 +0000 | +------------------------------------------------------------------------------+ python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb -------------------------------------------- new Debian package, version 2.0. size 8931416 bytes: control archive=1204 bytes. 913 bytes, 12 lines control 1466 bytes, 14 lines md5sums Package: python3-pysam-dbgsym Source: python-pysam (0.23.0+ds-1) Version: 0.23.0+ds-1+b1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 9347 Depends: python3-pysam (= 0.23.0+ds-1+b1) Section: debug Priority: optional Description: debug symbols for python3-pysam Build-Ids: 098dd2a9369f8c0012950e2f93f74f82f6a6c9a1 20a0de0a02c8a0ab9215caf2b01368b32f269cf8 21252dd4a19f583faa23c630933ef392c41f528b 28b0e8ec46420ae2977c9e69e880896905ad5411 2bf8cc38b37360e6322f46de6bda6991c6756bda 4612dcc1ef5c2279148021e5f399ee657bfd34b3 658a38171dfc7259aee8ebbac062b3fd55faca64 67f73fbed759666c9b523e3a4a3d57d313bceb63 6fa5fd7736f9a1bf944f995e785c2403d37d5d39 8449e0bae93e26af421b4988243e89908cf9ce8d 935f778994f7822717093b98dedb3474959081a7 b5c5767df7fe3b693f334b1037802d740f80d7f0 ce57cb469d0ff75816d245ec6865d3baf2e7196c drwxr-xr-x root/root 0 2025-02-26 19:36 ./ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/09/ -rw-r--r-- root/root 914608 2025-02-26 19:36 ./usr/lib/debug/.build-id/09/8dd2a9369f8c0012950e2f93f74f82f6a6c9a1.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/20/ -rw-r--r-- root/root 375392 2025-02-26 19:36 ./usr/lib/debug/.build-id/20/a0de0a02c8a0ab9215caf2b01368b32f269cf8.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/21/ -rw-r--r-- root/root 1720884 2025-02-26 19:36 ./usr/lib/debug/.build-id/21/252dd4a19f583faa23c630933ef392c41f528b.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/28/ -rw-r--r-- root/root 78188 2025-02-26 19:36 ./usr/lib/debug/.build-id/28/b0e8ec46420ae2977c9e69e880896905ad5411.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/2b/ -rw-r--r-- root/root 1348172 2025-02-26 19:36 ./usr/lib/debug/.build-id/2b/f8cc38b37360e6322f46de6bda6991c6756bda.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/46/ -rw-r--r-- root/root 478676 2025-02-26 19:36 ./usr/lib/debug/.build-id/46/12dcc1ef5c2279148021e5f399ee657bfd34b3.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/65/ -rw-r--r-- root/root 515024 2025-02-26 19:36 ./usr/lib/debug/.build-id/65/8a38171dfc7259aee8ebbac062b3fd55faca64.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/67/ -rw-r--r-- root/root 154368 2025-02-26 19:36 ./usr/lib/debug/.build-id/67/f73fbed759666c9b523e3a4a3d57d313bceb63.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/6f/ -rw-r--r-- root/root 352272 2025-02-26 19:36 ./usr/lib/debug/.build-id/6f/a5fd7736f9a1bf944f995e785c2403d37d5d39.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/84/ -rw-r--r-- root/root 260132 2025-02-26 19:36 ./usr/lib/debug/.build-id/84/49e0bae93e26af421b4988243e89908cf9ce8d.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/93/ -rw-r--r-- root/root 1202996 2025-02-26 19:36 ./usr/lib/debug/.build-id/93/5f778994f7822717093b98dedb3474959081a7.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/b5/ -rw-r--r-- root/root 1089728 2025-02-26 19:36 ./usr/lib/debug/.build-id/b5/c5767df7fe3b693f334b1037802d740f80d7f0.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.build-id/ce/ -rw-r--r-- root/root 1010244 2025-02-26 19:36 ./usr/lib/debug/.build-id/ce/57cb469d0ff75816d245ec6865d3baf2e7196c.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 37924 2025-02-26 19:36 ./usr/lib/debug/.dwz/i386-linux-gnu/python3-pysam.debug drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/share/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-02-26 19:36 ./usr/share/doc/python3-pysam-dbgsym -> python3-pysam python3-pysam_0.23.0+ds-1+b1_i386.deb ------------------------------------- new Debian package, version 2.0. size 3665344 bytes: control archive=9292 bytes. 713 bytes, 16 lines control 35342 bytes, 361 lines md5sums 271 bytes, 12 lines * postinst #!/bin/sh 384 bytes, 12 lines * prerm #!/bin/sh Package: python3-pysam Source: python-pysam (0.23.0+ds-1) Version: 0.23.0+ds-1+b1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 35534 Depends: libc6 (>= 2.38), libhts3t64 (>= 1.21), zlib1g (>= 1:1.1.4), python3 (<< 3.14), python3 (>= 3.13~), python3:any Section: python Priority: optional Homepage: https://pysam.readthedocs.org/en/latest Description: interface for the SAM/BAM sequence alignment and mapping format (Python 3) Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. . This package installs the module for Python 3. drwxr-xr-x root/root 0 2025-02-26 19:36 ./ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/ -rw-r--r-- root/root 1646 2025-02-26 19:36 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-02-26 19:36 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/dependency_links.txt -rw-r--r-- root/root 1 2025-02-26 19:36 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/not-zip-safe -rw-r--r-- root/root 6 2025-02-26 19:36 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/lib/python3/dist-packages/pysam/ -rw-r--r-- root/root 8955 2025-02-05 09:11 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root/root 18249 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/HMM.c -rw-r--r-- root/root 18278 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/HMM.c.pysam.c -rw-r--r-- root/root 5022 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/HMM.h -rw-r--r-- root/root 2192 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/README -rw-r--r-- root/root 33557 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/abuf.c -rw-r--r-- root/root 33622 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/abuf.c.pysam.c -rw-r--r-- root/root 2521 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/abuf.h -rw-r--r-- root/root 51505 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/bam2bcf.c -rw-r--r-- root/root 51606 2025-02-05 09:11 ./usr/lib/python3/dist-packages/pysam/include/bcftools/bam2bcf.c.pysam.c -rw-r--r-- root/root 9473 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./usr/share/doc/python3-pysam/ -rw-r--r-- root/root 2742 2025-02-26 19:36 ./usr/share/doc/python3-pysam/changelog.Debian.gz -rw-r--r-- root/root 231 2025-02-26 19:36 ./usr/share/doc/python3-pysam/changelog.Debian.i386.gz -rw-r--r-- root/root 3005 2025-02-05 20:16 ./usr/share/doc/python3-pysam/copyright drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-02-26 19:36 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 211 2024-05-12 12:22 ./usr/share/lintian/overrides/python3-pysam +------------------------------------------------------------------------------+ | Post Build Wed, 23 Jul 2025 21:50:43 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 23 Jul 2025 21:50:43 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 23 Jul 2025 21:50:44 +0000 | +------------------------------------------------------------------------------+ Build Architecture: i386 Build Type: any Build-Space: 195748 Build-Time: 274 Distribution: unstable Host Architecture: i386 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdp2CGoQ/inputs/python-pysam_0.23.0+ds-1.dsc Machine Architecture: amd64 Package: python-pysam Package-Time: 286 Source-Version: 0.23.0+ds-1 Space: 195748 Status: successful Version: 0.23.0+ds-1+b1 -------------------------------------------------------------------------------- Finished at 2025-07-23T21:50:41Z Build needed 00:04:46, 195748k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdp2CGoQ/out checking python3-pysam-dbgsym_0.23.0+ds-1+b1_i386.deb: size... sha1... md5... sha256... all OK checking python3-pysam_0.23.0+ds-1+b1_i386.deb: size differs for python3-pysam_0.23.0+ds-1+b1_i386.deb