=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderda40T05/inputs/hmmer_3.4+dfsg-2_i386.buildinfo Source: hmmer Version: 3.4+dfsg-2 rebuilderd-worker node: infom08-amd64 +------------------------------------------------------------------------------+ | Downloading sources Mon, 28 Jul 2025 21:11:59 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [168 kB] Get:2 https://deb.debian.org/debian sid InRelease [213 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.0 MB] Fetched 21.9 MB in 2s (14.2 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-2.dsc' hmmer_3.4+dfsg-2.dsc 2119 SHA256:28fa8e20c62b6fba8fcfd70c25bcc7d647fe47b871b10b132784660d61b2c413 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg.orig.tar.xz' hmmer_3.4+dfsg.orig.tar.xz 13297988 SHA256:87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 'https://deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.4%2bdfsg-2.debian.tar.xz' hmmer_3.4+dfsg-2.debian.tar.xz 12792 SHA256:5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 hmmer_3.4+dfsg.orig.tar.xz 5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 hmmer_3.4+dfsg-2.debian.tar.xz 28fa8e20c62b6fba8fcfd70c25bcc7d647fe47b871b10b132784660d61b2c413 hmmer_3.4+dfsg-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Mon, 28 Jul 2025 21:12:01 +0000 | +------------------------------------------------------------------------------+ Rebuilding hmmer=3.4+dfsg-2 in /srv/rebuilderd/tmp/rebuilderda40T05/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderda40T05/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderda40T05/inputs/hmmer_3.4+dfsg-2_i386.buildinfo /srv/rebuilderd/tmp/rebuilderda40T05/inputs/hmmer_3.4+dfsg-2_i386.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/hmmer-3.4+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie InRelease [156 kB] Get:2 http://snapshot.debian.org/archive/debian/20240222T093007Z trixie InRelease [157 kB] Get:3 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 Packages [8892 kB] Get:4 http://snapshot.debian.org/archive/debian/20240222T093007Z trixie/main i386 Packages [9016 kB] Fetched 18.2 MB in 1s (14.3 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20230919T204833Z/dists/trixie/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20240222T093007Z/dists/trixie/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 bash i386 5.2.15-2+b4 [1527 kB] Fetched 1527 kB in 0s (75.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzoibe8dd/bash_5.2.15-2+b4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 hostname i386 3.23+nmu1 [10.9 kB] Fetched 10.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe87t13yh/hostname_3.23+nmu1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libatomic1 i386 13.2.0-3 [7628 B] Fetched 7628 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj37uovyc/libatomic1_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libitm1 i386 13.2.0-3 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2d0oakx5/libitm1_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Fetched 70.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7srv7pgt/libnsl-dev_1.3.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpam0g i386 1.5.2-7 [69.7 kB] Fetched 69.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6exv55sf/libpam0g_1.5.2-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 zlib1g i386 1:1.2.13.dfsg-3 [83.1 kB] Fetched 83.1 kB in 0s (8142 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.2.13.dfsg-3_i386.deb' to '/srv/rebuilderd/tmp/tmphch8cetj/zlib1g_1.2.13.dfsg-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 liblzma5 i386 5.4.4-0.1 [237 kB] Fetched 237 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphindxsvr/liblzma5_5.4.4-0.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 dash i386 0.5.12-6 [96.6 kB] Fetched 96.6 kB in 0s (6528 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2eqdgl6u/dash_0.5.12-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 usrmerge all 37 [13.3 kB] Fetched 13.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6dcdmm4/usrmerge_37_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 gcc-13 i386 13.2.0-3 [21.0 MB] Fetched 21.0 MB in 0s (88.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn5lasuzr/gcc-13_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 debhelper all 13.11.6 [952 kB] Fetched 952 kB in 0s (62.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfm1m6d1o/debhelper_13.11.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libperl5.36 i386 5.36.0-9 [3824 kB] Fetched 3824 kB in 0s (137 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4cf43odo/libperl5.36_5.36.0-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libjansson4 i386 2.14-2 [42.6 kB] Fetched 42.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp000d2syz/libjansson4_2.14-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libbz2-1.0 i386 1.0.8-5+b1 [47.1 kB] Fetched 47.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp078jn4uf/libbz2-1.0_1.0.8-5+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libctf-nobfd0 i386 2.41-5 [153 kB] Fetched 153 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpykzl5o52/libctf-nobfd0_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 base-passwd i386 3.6.1 [60.6 kB] Fetched 60.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_7q7bi1u/base-passwd_3.6.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libc6 i386 2.37-8 [2623 kB] Fetched 2623 kB in 0s (123 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqggwqq_3/libc6_2.37-8_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 media-types all 10.1.0 [26.9 kB] Fetched 26.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcnn455sp/media-types_10.1.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 man-db i386 2.11.2-3 [1397 kB] Fetched 1397 kB in 0s (84.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmj_1bs51/man-db_2.11.2-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libc6-dev i386 2.37-8 [1719 kB] Fetched 1719 kB in 0s (92.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp15y25dih/libc6-dev_2.37-8_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libtool all 2.4.7-7 [517 kB] Fetched 517 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1e62g_1/libtool_2.4.7-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 liblz4-1 i386 1.9.4-1 [65.2 kB] Fetched 65.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcl70cc4m/liblz4-1_1.9.4-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Fetched 8620 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgan8pwf/dh-strip-nondeterminism_1.13.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpython3.11-stdlib i386 3.11.5-3 [1801 kB] Fetched 1801 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpicc28hzq/libpython3.11-stdlib_3.11.5-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgmp10 i386 2:6.3.0+dfsg-2 [570 kB] Fetched 570 kB in 0s (41.6 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-2_i386.deb' to '/srv/rebuilderd/tmp/tmpqqgqu875/libgmp10_6.3.0+dfsg-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libselinux1 i386 3.5-1 [77.6 kB] Fetched 77.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1rgykvwr/libselinux1_3.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libicu72 i386 72.1-3 [9541 kB] Fetched 9541 kB in 0s (175 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1xejmgie/libicu72_72.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libmagic1 i386 1:5.45-2 [114 kB] Fetched 114 kB in 0s (10.9 MB/s) dpkg-name: info: moved 'libmagic1_1%3a5.45-2_i386.deb' to '/srv/rebuilderd/tmp/tmp_8on5rs6/libmagic1_5.45-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 usr-is-merged all 37 [5560 B] Fetched 5560 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptod2y59s/usr-is-merged_37_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20240222T093007Z trixie/main i386 libmpfr6 i386 4.2.1-1 [747 kB] Fetched 747 kB in 0s (53.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3y5vdxx1/libmpfr6_4.2.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3 [720 kB] Fetched 720 kB in 0s (50.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprvu6k766/libxml2_2.9.14+dfsg-1.3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libbinutils i386 2.41-5 [566 kB] Fetched 566 kB in 0s (43.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsv86rpqf/libbinutils_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libfile-find-rule-perl all 0.34-3 [26.6 kB] Fetched 26.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxx66fao9/libfile-find-rule-perl_0.34-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgcc-s1 i386 13.2.0-3 [65.9 kB] Fetched 65.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmp2tlzc3/libgcc-s1_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 tar i386 1.34+dfsg-1.2 [860 kB] Fetched 860 kB in 0s (62.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplyael8o_/tar_1.34+dfsg-1.2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 python3-minimal i386 3.11.4-5+b1 [26.5 kB] Fetched 26.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8qlgosst/python3-minimal_3.11.4-5+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libsframe1 i386 2.41-5 [75.2 kB] Fetched 75.2 kB in 0s (4485 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp334pbz4n/libsframe1_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 dwz i386 0.15-1 [118 kB] Fetched 118 kB in 0s (8722 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3uc_of4d/dwz_0.15-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 binutils-common i386 2.41-5 [2504 kB] Fetched 2504 kB in 0s (27.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfericmx5/binutils-common_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libsystemd0 i386 254.1-3 [378 kB] Fetched 378 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8p8l61pk/libsystemd0_254.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 m4 i386 1.4.19-4 [293 kB] Fetched 293 kB in 0s (7156 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpieb817di/m4_1.4.19-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 sensible-utils all 0.0.20 [19.3 kB] Fetched 19.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfn7r_ts/sensible-utils_0.0.20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 patch i386 2.7.6-7 [141 kB] Fetched 141 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3i905t4v/patch_2.7.6-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 python3.11-minimal i386 3.11.5-3 [2089 kB] Fetched 2089 kB in 0s (96.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp50phxl_g/python3.11-minimal_3.11.5-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 python3 i386 3.11.4-5+b1 [26.5 kB] Fetched 26.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoybjxxz2/python3_3.11.4-5+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libdivsufsort3 i386 2.0.1-5 [49.5 kB] Fetched 49.5 kB in 0s (4564 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpru41ma50/libdivsufsort3_2.0.1-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 perl-base i386 5.36.0-9 [1701 kB] Fetched 1701 kB in 0s (87.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjpvodhzy/perl-base_5.36.0-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libssl3 i386 3.0.10-1 [2015 kB] Fetched 2015 kB in 0s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkmflsouh/libssl3_3.0.10-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 cpp-13 i386 13.2.0-3 [10.6 MB] Fetched 10.6 MB in 0s (144 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0uei19j8/cpp-13_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 sysvinit-utils i386 3.07-1 [31.9 kB] Fetched 31.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_rno6hbh/sysvinit-utils_3.07-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 build-essential i386 12.10 [4516 B] Fetched 4516 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6n_4xzvj/build-essential_12.10_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libnumber-compare-perl all 0.03-3 [6332 B] Fetched 6332 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpepx7866g/libnumber-compare-perl_0.03-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libaudit1 i386 1:3.1.1-1 [49.0 kB] Fetched 49.0 kB in 0s (4753 kB/s) dpkg-name: info: moved 'libaudit1_1%3a3.1.1-1_i386.deb' to '/srv/rebuilderd/tmp/tmpl6__vjkx/libaudit1_3.1.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libzstd1 i386 1.5.5+dfsg2-1 [280 kB] Fetched 280 kB in 0s (23.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5v12id0m/libzstd1_1.5.5+dfsg2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libtinfo6 i386 6.4+20230625-2 [341 kB] Fetched 341 kB in 0s (25.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2jpwtluy/libtinfo6_6.4+20230625-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 perl-modules-5.36 all 5.36.0-9 [2815 kB] Fetched 2815 kB in 0s (113 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwh9932tc/perl-modules-5.36_5.36.0-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 autoconf all 2.71-3 [332 kB] Fetched 332 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1cl3hhs/autoconf_2.71-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libudev1 i386 254.1-3 [122 kB] Fetched 122 kB in 0s (3953 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqsmejiyb/libudev1_254.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 readline-common all 8.2-1.3 [69.0 kB] Fetched 69.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpulvkfgg2/readline-common_8.2-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libc-dev-bin i386 2.37-8 [46.1 kB] Fetched 46.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkc0j_tf9/libc-dev-bin_2.37-8_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libdebhelper-perl all 13.11.6 [81.9 kB] Fetched 81.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwahgiea2/libdebhelper-perl_13.11.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libattr1 i386 1:2.5.1-4 [22.3 kB] Fetched 22.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.1-4_i386.deb' to '/srv/rebuilderd/tmp/tmpf_tlvb1c/libattr1_2.5.1-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 bsdutils i386 1:2.39.2-1 [100 kB] Fetched 100 kB in 0s (0 B/s) dpkg-name: info: moved 'bsdutils_1%3a2.39.2-1_i386.deb' to '/srv/rebuilderd/tmp/tmpfixbxaj8/bsdutils_2.39.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr7idk_6w/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libexpat1 i386 2.5.0-2 [103 kB] Fetched 103 kB in 0s (1621 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp29pgwz7/libexpat1_2.5.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 ncurses-base all 6.4+20230625-2 [265 kB] Fetched 265 kB in 0s (22.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuvxy5u7z/ncurses-base_6.4+20230625-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 cpp i386 4:13.2.0-1 [7000 B] Fetched 7000 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a13.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmppzt1jguy/cpp_13.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 rpcsvc-proto i386 1.4.3-1 [66.1 kB] Fetched 66.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpji8de2yi/rpcsvc-proto_1.4.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libasan8 i386 13.2.0-3 [2476 kB] Fetched 2476 kB in 0s (90.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwg63qp0w/libasan8_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libaudit-common all 1:3.1.1-1 [10.8 kB] Fetched 10.8 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a3.1.1-1_all.deb' to '/srv/rebuilderd/tmp/tmpucqmphoi/libaudit-common_3.1.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libcom-err2 i386 1.47.0-2+b1 [20.4 kB] Fetched 20.4 kB in 0s (1693 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcd6j3j9m/libcom-err2_1.47.0-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 bsdextrautils i386 2.39.2-1 [92.6 kB] Fetched 92.6 kB in 0s (8792 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc2wbwmkz/bsdextrautils_2.39.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Fetched 42.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp42ytgdm6/libnsl2_1.3.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libncursesw6 i386 6.4+20230625-2 [146 kB] Fetched 146 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxsvzt78o/libncursesw6_6.4+20230625-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libmount1 i386 2.39.2-1 [202 kB] Fetched 202 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp332v5igw/libmount1_2.39.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Fetched 823 kB in 0s (74.8 MB/s) dpkg-name: info: moved 'automake_1%3a1.16.5-1.3_all.deb' to '/srv/rebuilderd/tmp/tmpzd12kixk/automake_1.16.5-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 groff-base i386 1.23.0-2 [1193 kB] Fetched 1193 kB in 0s (54.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_zcgfk_/groff-base_1.23.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgpg-error0 i386 1.47-2 [82.8 kB] Fetched 82.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5oyr4p24/libgpg-error0_1.47-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 make i386 4.3-4.1 [404 kB] Fetched 404 kB in 0s (34.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3p2cbyda/make_4.3-4.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1960 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9fg_jo8_/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 gcc i386 4:13.2.0-1 [5272 B] Fetched 5272 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a13.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp_lrzavyp/gcc_13.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libctf0 i386 2.41-5 [91.3 kB] Fetched 91.3 kB in 0s (8977 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp56bgmags/libctf0_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgdbm6 i386 1.23-3 [77.5 kB] Fetched 77.5 kB in 0s (4182 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpds6asel5/libgdbm6_1.23-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 xz-utils i386 5.4.4-0.1 [497 kB] Fetched 497 kB in 0s (39.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ph_hk8p/xz-utils_5.4.4-0.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libdpkg-perl all 1.22.0 [641 kB] Fetched 641 kB in 0s (39.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbjkedqd/libdpkg-perl_1.22.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 gettext-base i386 0.21-13+b1 [162 kB] Fetched 162 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphscf67bx/gettext-base_0.21-13+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libmagic-mgc i386 1:5.45-2 [314 kB] Fetched 314 kB in 0s (31.3 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-2_i386.deb' to '/srv/rebuilderd/tmp/tmpxso8o5ua/libmagic-mgc_5.45-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgcc-13-dev i386 13.2.0-3 [2497 kB] Fetched 2497 kB in 0s (32.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtry4_wh/libgcc-13-dev_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 tzdata all 2023c-10 [252 kB] Fetched 252 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe5g675xz/tzdata_2023c-10_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libcap2 i386 1:2.66-4 [28.2 kB] Fetched 28.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.66-4_i386.deb' to '/srv/rebuilderd/tmp/tmp6hmgevps/libcap2_2.66-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 login i386 1:4.13+dfsg1-1+b1 [617 kB] Fetched 617 kB in 0s (41.8 MB/s) dpkg-name: info: moved 'login_1%3a4.13+dfsg1-1+b1_i386.deb' to '/srv/rebuilderd/tmp/tmpr3l0fizy/login_4.13+dfsg1-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 dpkg i386 1.22.0 [1592 kB] Fetched 1592 kB in 0s (44.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0krm5fo/dpkg_1.22.0_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libcrypt-dev i386 1:4.4.36-2 [125 kB] Fetched 125 kB in 0s (8931 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.36-2_i386.deb' to '/srv/rebuilderd/tmp/tmpvgtlrvx8/libcrypt-dev_4.4.36-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libdebconfclient0 i386 0.270 [9944 B] Fetched 9944 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi4976g59/libdebconfclient0_0.270_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libkeyutils1 i386 1.6.3-2 [9284 B] Fetched 9284 B in 0s (153 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbhznse_n/libkeyutils1_1.6.3-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libdb5.3 i386 5.3.28+dfsg2-2 [758 kB] Fetched 758 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprneqwmri/libdb5.3_5.3.28+dfsg2-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 python3.11 i386 3.11.5-3 [582 kB] Fetched 582 kB in 0s (47.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpydqlnqz5/python3.11_3.11.5-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libc-bin i386 2.37-8 [625 kB] Fetched 625 kB in 0s (8450 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7fcfnuf1/libc-bin_2.37-8_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (729 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_ktm58m/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libcrypt1 i386 1:4.4.36-2 [95.6 kB] Fetched 95.6 kB in 0s (984 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.36-2_i386.deb' to '/srv/rebuilderd/tmp/tmpha8qjus3/libcrypt1_4.4.36-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 sed i386 4.9-1 [333 kB] Fetched 333 kB in 0s (31.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ryuq4so/sed_4.9-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 binutils i386 2.41-5 [79.7 kB] Fetched 79.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd7kmr74g/binutils_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 perl i386 5.36.0-9 [239 kB] Fetched 239 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_yk_qy8u/perl_5.36.0-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libcap-ng0 i386 0.8.3-1+b3 [17.4 kB] Fetched 17.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0bkvw2z/libcap-ng0_0.8.3-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libsqlite3-0 i386 3.43.1-1 [942 kB] Fetched 942 kB in 0s (61.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgc7og_fw/libsqlite3-0_3.43.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libffi8 i386 3.4.4-1 [21.1 kB] Fetched 21.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqihlpe68/libffi8_3.4.4-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libisl23 i386 0.26-3 [787 kB] Fetched 787 kB in 0s (49.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdvdo2wh5/libisl23_0.26-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 coreutils i386 9.1-1 [2970 kB] Fetched 2970 kB in 0s (122 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpor4t9pf0/coreutils_9.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 ncurses-bin i386 6.4+20230625-2 [428 kB] Fetched 428 kB in 0s (35.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb1m2ufpt/ncurses-bin_6.4+20230625-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 debconf all 1.5.82 [121 kB] Fetched 121 kB in 0s (1920 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm5sn3ot_/debconf_1.5.82_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpam-runtime all 1.5.2-7 [136 kB] Fetched 136 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp55a64j1j/libpam-runtime_1.5.2-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 autopoint all 0.21-13 [496 kB] Fetched 496 kB in 0s (45.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0jqllfyw/autopoint_0.21-13_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Fetched 19.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5eoh055n/libfile-stripnondeterminism-perl_1.13.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libkrb5-3 i386 1.20.1-3 [359 kB] Fetched 359 kB in 0s (32.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxaet4byy/libkrb5-3_1.20.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 gettext i386 0.21-13+b1 [1310 kB] Fetched 1310 kB in 0s (77.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpscmu1i6q/gettext_0.21-13+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libmd0 i386 1.1.0-1 [38.8 kB] Fetched 38.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpieuzdc6y/libmd0_1.1.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libelf1 i386 0.189-4 [180 kB] Fetched 180 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7z4c4vav/libelf1_0.189-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 binutils-i686-linux-gnu i386 2.41-5 [2374 kB] Fetched 2374 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsli7l13o/binutils-i686-linux-gnu_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 findutils i386 4.9.0-5 [650 kB] Fetched 650 kB in 0s (30.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp96opmocg/findutils_4.9.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libsub-override-perl all 0.09-4 [9304 B] Fetched 9304 B in 0s (848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzstmhi1j/libsub-override-perl_0.09-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libtext-glob-perl all 0.11-3 [7676 B] Fetched 7676 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiqri4yal/libtext-glob-perl_0.11-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Fetched 40.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxke27_0l/libpipeline1_1.5.7-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libk5crypto3 i386 1.20.1-3 [82.3 kB] Fetched 82.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbnox3lac/libk5crypto3_1.20.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgprofng0 i386 2.41-5 [813 kB] Fetched 813 kB in 0s (58.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwpz36gse/libgprofng0_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libreadline8 i386 8.2-1.3 [171 kB] Fetched 171 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2nokmkq6/libreadline8_8.2-1.3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgssapi-krb5-2 i386 1.20.1-3 [144 kB] Fetched 144 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpouzaiheg/libgssapi-krb5-2_1.20.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libunistring5 i386 1.1-2 [427 kB] Fetched 427 kB in 0s (36.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2v_yi6mw/libunistring5_1.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 diffutils i386 1:3.8-4 [359 kB] Fetched 359 kB in 0s (20.9 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.8-4_i386.deb' to '/srv/rebuilderd/tmp/tmpuli5fwlc/diffutils_3.8-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 util-linux i386 2.39.2-1 [1261 kB] Fetched 1261 kB in 0s (7255 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk7ydd2zg/util-linux_2.39.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpython3-stdlib i386 3.11.4-5+b1 [9496 B] Fetched 9496 B in 0s (689 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62uxqsso/libpython3-stdlib_3.11.4-5+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libseccomp2 i386 2.5.4-1+b3 [49.2 kB] Fetched 49.2 kB in 0s (620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7maltpjj/libseccomp2_2.5.4-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgomp1 i386 13.2.0-3 [131 kB] Fetched 131 kB in 0s (1983 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp706wi5me/libgomp1_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libuuid1 i386 2.39.2-1 [30.1 kB] Fetched 30.1 kB in 0s (483 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl69omaj2/libuuid1_2.39.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 gcc-13-base i386 13.2.0-3 [39.7 kB] Fetched 39.7 kB in 0s (803 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp127lout5/gcc-13-base_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 base-files i386 13 [70.6 kB] Fetched 70.6 kB in 0s (748 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp268x90_b/base-files_13_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 init-system-helpers all 1.65.2 [49.8 kB] Fetched 49.8 kB in 0s (3837 kB/s) Downloading dependency 1 of 170: bash:i386=5.2.15-2+b4 Downloading dependency 2 of 170: hostname:i386=3.23+nmu1 Downloading dependency 3 of 170: libatomic1:i386=13.2.0-3 Downloading dependency 4 of 170: libitm1:i386=13.2.0-3 Downloading dependency 5 of 170: libnsl-dev:i386=1.3.0-2 Downloading dependency 6 of 170: libpam0g:i386=1.5.2-7 Downloading dependency 7 of 170: zlib1g:i386=1:1.2.13.dfsg-3 Downloading dependency 8 of 170: liblzma5:i386=5.4.4-0.1 Downloading dependency 9 of 170: dash:i386=0.5.12-6 Downloading dependency 10 of 170: usrmerge:i386=37 Downloading dependency 11 of 170: gcc-13:i386=13.2.0-3 Downloading dependency 12 of 170: debhelper:i386=13.11.6 Downloading dependency 13 of 170: libperl5.36:i386=5.36.0-9 Downloading dependency 14 of 170: libjansson4:i386=2.14-2 Downloading dependency 15 of 170: libbz2-1.0:i386=1.0.8-5+b1 Downloading dependency 16 of 170: libctf-nobfd0:i386=2.41-5 Downloading dependency 17 of 170: base-passwd:i386=3.6.1 Downloading dependency 18 of 170: libc6:i386=2.37-8 Downloading dependency 19 of 170: media-types:i386=10.1.0 Downloading dependency 20 of 170: man-db:i386=2.11.2-3 Downloading dependency 21 of 170: libc6-dev:i386=2.37-8 Downloading dependency 22 of 170: libtool:i386=2.4.7-7 Downloading dependency 23 of 170: liblz4-1:i386=1.9.4-1 Downloading dependency 24 of 170: dh-strip-nondeterminism:i386=1.13.1-1 Downloading dependency 25 of 170: libpython3.11-stdlib:i386=3.11.5-3 Downloading dependency 26 of 170: libgmp10:i386=2:6.3.0+dfsg-2 Downloading dependency 27 of 170: libselinux1:i386=3.5-1 Downloading dependency 28 of 170: libicu72:i386=72.1-3 Downloading dependency 29 of 170: libmagic1:i386=1:5.45-2 Downloading dependency 30 of 170: usr-is-merged:i386=37 Downloading dependency 31 of 170: libmpfr6:i386=4.2.1-1 Downloading dependency 32 of 170: libxml2:i386=2.9.14+dfsg-1.3 Downloading dependency 33 of 170: libbinutils:i386=2.41-5 Downloading dependency 34 of 170: libfile-find-rule-perl:i386=0.34-3 Downloading dependency 35 of 170: libgcc-s1:i386=13.2.0-3 Downloading dependency 36 of 170: tar:i386=1.34+dfsg-1.2 Downloading dependency 37 of 170: python3-minimal:i386=3.11.4-5+b1 Downloading dependency 38 of 170: libsframe1:i386=2.41-5 Downloading dependency 39 of 170: dwz:i386=0.15-1 Downloading dependency 40 of 170: binutils-common:i386=2.41-5 Downloading dependency 41 of 170: libsystemd0:i386=254.1-3 Downloading dependency 42 of 170: m4:i386=1.4.19-4 Downloading dependency 43 of 170: sensible-utils:i386=0.0.20 Downloading dependency 44 of 170: patch:i386=2.7.6-7 Downloading dependency 45 of 170: python3.11-minimal:i386=3.11.5-3 Downloading dependency 46 of 170: python3:i386=3.11.4-5+b1 Downloading dependency 47 of 170: libdivsufsort3:i386=2.0.1-5 Downloading dependency 48 of 170: perl-base:i386=5.36.0-9 Downloading dependency 49 of 170: libssl3:i386=3.0.10-1 Downloading dependency 50 of 170: cpp-13:i386=13.2.0-3 Downloading dependency 51 of 170: sysvinit-utils:i386=3.07-1 Downloading dependency 52 of 170: build-essential:i386=12.10 Downloading dependency 53 of 170: libnumber-compare-perl:i386=0.03-3 Downloading dependency 54 of 170: libaudit1:i386=1:3.1.1-1 Downloading dependency 55 of 170: libzstd1:i386=1.5.5+dfsg2-1 Downloading dependency 56 of 170: libtinfo6:i386=6.4+20230625-2 Downloading dependency 57 of 170: perl-modules-5.36:i386=5.36.0-9 Downloading dependency 58 of 170: autoconf:i386=2.71-3 Downloading dependency 59 of 170: libudev1:i386=254.1-3 Downloading dependency 60 of 170: readline-common:i386=8.2-1.3 Downloading dependency 61 of 170: libc-dev-bin:i386=2.37-8 Downloading dependency 62 of 170: libdebhelper-perl:i386=13.11.6 Downloading dependency 63 of 170: libattr1:i386=1:2.5.1-4 Downloading dependency 64 of 170: bsdutils:i386=1:2.39.2-1 Downloading dependency 65 of 170: libarchive-zip-perl:i386=1.68-1 Downloading dependency 66 of 170: libexpat1:i386=2.5.0-2 Downloading dependency 67 of 170: ncurses-base:i386=6.4+20230625-2 Downloading dependency 68 of 170: cpp:i386=4:13.2.0-1 Downloading dependency 69 of 170: rpcsvc-proto:i386=1.4.3-1 Downloading dependency 70 of 170: libasan8:i386=13.2.0-3 Downloading dependency 71 of 170: libaudit-common:i386=1:3.1.1-1 Downloading dependency 72 of 170: libcom-err2:i386=1.47.0-2+b1 Downloading dependency 73 of 170: bsdextrautils:i386=2.39.2-1 Downloading dependency 74 of 170: libnsl2:i386=1.3.0-2 Downloading dependency 75 of 170: libncursesw6:i386=6.4+20230625-2 Downloading dependency 76 of 170: libmount1:i386=2.39.2-1 Downloading dependency 77 of 170: automake:i386=1:1.16.5-1.3 Downloading dependency 78 of 170: groff-base:i386=1.23.0-2 Downloading dependency 79 of 170: libgpg-error0:i386=1.47-2 Downloading dependency 80 of 170: make:i386=4.3-4.1 Downloading dependency 81 of 170: intltool-debian:i386=0.35.0+20060710.6 Downloading dependency 82 of 170: gcc:i386=4:13.2.0-1 Downloading dependency 83 of 170: libctf0:i386=2.41-5 Downloading dependency 84 of 170: libgdbm6:i386=1.23-3 Downloading dependency 85 of 170: xz-utils:i386=5.4.4-0.1 Downloading dependency 86 of 170: libdpkg-perl:i386=1.22.0 Downloading dependency 87 of 170: gettext-base:i386=0.21-13+b1 Downloading dependency 88 of 170: libmagic-mgc:i386=1:5.45-2 Downloading dependency 89 of 170: libgcc-13-dev:i386=13.2.0-3 Downloading dependency 90 of 170: tzdata:i386=2023c-10 Downloading dependency 91 of 170: libcap2:i386=1:2.66-4 Downloading dependency 92 of 170: login:i386=1:4.13+dfsg1-1+b1 Downloading dependency 93 of 170: dpkg:i386=1.22.0 Downloading dependency 94 of 170: libcrypt-dev:i386=1:4.4.36-2 Downloading dependency 95 of 170: libdebconfclient0:i386=0.270 Downloading dependency 96 of 170: libkeyutils1:i386=1.6.3-2 Downloading dependency 97 of 170: libdb5.3:i386=5.3.28+dfsg2-2 Downloading dependency 98 of 170: python3.11:i386=3.11.5-3 Downloading dependency 99 of 170: libc-bin:i386=2.37-8 Downloading dependency 100 of 170: autotools-dev:i386=20220109.1 Downloading dependency 101 of 170: libcrypt1:i386=1:4.4.36-2 Downloading dependency 102 of 170: sed:i386=4.9-1 Downloading dependency 103 of 170: binutils:i386=2.41-5 Downloading dependency 104 of 170: perl:i386=5.36.0-9 Downloading dependency 105 of 170: libcap-ng0:i386=0.8.3-1+b3 Downloading dependency 106 of 170: libsqlite3-0:i386=3.43.1-1 Downloading dependency 107 of 170: libffi8:i386=3.4.4-1 Downloading dependency 108 of 170: libisl23:i386=0.26-3 Downloading dependency 109 of 170: coreutils:i386=9.1-1 Downloading dependency 110 of 170: ncurses-bin:i386=6.4+20230625-2 Downloading dependency 111 of 170: debconf:i386=1.5.82 Downloading dependency 112 of 170: libpam-runtime:i386=1.5.2-7 Downloading dependency 113 of 170: autopoint:i386=0.21-13 Downloading dependency 114 of 170: libfile-stripnondeterminism-perl:i386=1.13.1-1 Downloading dependency 115 of 170: libkrb5-3:i386=1.20.1-3 Downloading dependency 116 of 170: gettext:i386=0.21-13+b1 Downloading dependency 117 of 170: libmd0:i386=1.1.0-1 Downloading dependency 118 of 170: libelf1:i386=0.189-4 Downloading dependency 119 of 170: binutils-i686-linux-gnu:i386=2.41-5 Downloading dependency 120 of 170: findutils:i386=4.9.0-5 Downloading dependency 121 of 170: libsub-override-perl:i386=0.09-4 Downloading dependency 122 of 170: libtext-glob-perl:i386=0.11-3 Downloading dependency 123 of 170: libpipeline1:i386=1.5.7-1 Downloading dependency 124 of 170: libk5crypto3:i386=1.20.1-3 Downloading dependency 125 of 170: libgprofng0:i386=2.41-5 Downloading dependency 126 of 170: libreadline8:i386=8.2-1.3 Downloading dependency 127 of 170: libgssapi-krb5-2:i386=1.20.1-3 Downloading dependency 128 of 170: libunistring5:i386=1.1-2 Downloading dependency 129 of 170: diffutils:i386=1:3.8-4 Downloading dependency 130 of 170: util-linux:i386=2.39.2-1 Downloading dependency 131 of 170: libpython3-stdlib:i386=3.11.4-5+b1 Downloading dependency 132 of 170: libseccomp2:i386=2.5.4-1+b3 Downloading dependency 133 of 170: libgomp1:i386=13.2.0-3 Downloading dependency 134 of 170: libuuid1:i386=2.39.2-1 Downloading dependency 135 of 170: gcc-13-base:i386=13.2.0-3 Downloading dependency 136 of 170: base-files:i386=13 Downloading dependency 137 of 170: init-system-helpers:i386=1.65.2 Downloading dependency 138 of 170: libgcrypt20:i386=1.10.2-2dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpddi973tc/init-system-helpers_1.65.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgcrypt20 i386 1.10.2-2 [688 kB] Fetched 688 kB in 0s (54.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmp2meg6v/libgcrypt20_1.10.2-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpam-modules-bin i386 1.5.2-7 [52.5 kB] Fetched 52.5 kB in 0s (2997 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpej1tspgl/libpam-modules-bin_1.5.2-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpam-modules i386 1.5.2-7 [279 kB] Fetched 279 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmparv3_gvv/libpam-modules_1.5.2-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Fetched 14.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfj1wozlb/libtirpc-common_1.3.3+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 dpkg-dev all 1.22.0 [1379 kB] Fetched 1379 kB in 0s (15.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps9zjl775/dpkg-dev_1.22.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libstdc++-13-dev i386 13.2.0-3 [2284 kB] Fetched 2284 kB in 0s (97.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1xrrwvqu/libstdc++-13-dev_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 gzip i386 1.12-1 [141 kB] Fetched 141 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2xoxwmyx/gzip_1.12-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libstdc++6 i386 13.2.0-3 [747 kB] Fetched 747 kB in 0s (33.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph2cihuvo/libstdc++6_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqf69i4e7/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 g++ i386 4:13.2.0-1 [1360 B] Fetched 1360 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a13.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp6cru4sub/g++_13.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 mawk i386 1.3.4.20230808-1 [137 kB] Fetched 137 kB in 0s (2199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsstz8zz5/mawk_1.3.4.20230808-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 file i386 1:5.45-2 [42.8 kB] Fetched 42.8 kB in 0s (0 B/s) dpkg-name: info: moved 'file_1%3a5.45-2_i386.deb' to '/srv/rebuilderd/tmp/tmpmdxajmr0/file_5.45-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libacl1 i386 2.3.1-3 [33.2 kB] Fetched 33.2 kB in 0s (331 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp500gqsbs/libacl1_2.3.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libblkid1 i386 2.39.2-1 [174 kB] Fetched 174 kB in 0s (3622 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2bvr55n8/libblkid1_2.39.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libsmartcols1 i386 2.39.2-1 [123 kB] Fetched 123 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsv87d3va/libsmartcols1_2.39.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libtirpc3 i386 1.3.3+ds-1 [92.6 kB] Fetched 92.6 kB in 0s (6785 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyew6nir6/libtirpc3_1.3.3+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libtirpc-dev i386 1.3.3+ds-1 [202 kB] Fetched 202 kB in 0s (16.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4c1fqifr/libtirpc-dev_1.3.3+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libkrb5support0 i386 1.20.1-3 [35.0 kB] Fetched 35.0 kB in 0s (999 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvz423t7g/libkrb5support0_1.20.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (43.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7cq_9y6b/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 debianutils i386 5.12 [104 kB] Fetched 104 kB in 0s (1214 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpykxk6dbw/debianutils_5.12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpcre2-8-0 i386 10.42-4 [259 kB] Fetched 259 kB in 0s (22.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm2kb6s3i/libpcre2-8-0_10.42-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libubsan1 i386 13.2.0-3 [984 kB] Fetched 984 kB in 0s (64.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm4_z7yv5/libubsan1_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Fetched 67.9 kB in 0s (5846 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq5u0rk3f/libuchardet0_0.0.7-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 grep i386 3.11-3 [437 kB] Fetched 437 kB in 0s (28.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvifwz55q/grep_3.11-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 g++-13 i386 13.2.0-3 [11.6 MB] Fetched 11.6 MB in 0s (131 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_xohsvgq/g++-13_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libgdbm-compat4 i386 1.23-3 [48.6 kB] Fetched 48.6 kB in 0s (712 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa4wevrxw/libgdbm-compat4_1.23-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 linux-libc-dev i386 6.4.13-1 [1830 kB] Fetched 1830 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfd8b7jmu/linux-libc-dev_6.4.13-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libquadmath0 i386 13.2.0-3 [229 kB] Fetched 229 kB in 0s (2459 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ir_mw_u/libquadmath0_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libcc1-0 i386 13.2.0-3 [44.8 kB] Fetched 44.8 kB in 0s (1106 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx2yd_54b/libcc1-0_13.2.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libmpc3 i386 1.3.1-1 [59.5 kB] Fetched 59.5 kB in 0s (662 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfumv7okg/libmpc3_1.3.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libdivsufsort-dev i386 2.0.1-5 [19.1 kB] Fetched 19.1 kB in 0s (343 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsgbn05x3/libdivsufsort-dev_2.0.1-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 libpython3.11-minimal i386 3.11.5-3 [815 kB] Fetched 815 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc9lirvwa/libpython3.11-minimal_3.11.5-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20230919T204833Z trixie/main i386 bzip2 i386 1.0.8-5+b1 [50.1 kB] Fetched 50.1 kB in 0s (1294 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfdjtdr6o/bzip2_1.0.8-5+b1_i386.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture amd64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpb97h43o1/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: i386 is different from amd64 but can be executed natively I: using /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ 127.0.0.1 - - [28/Jul/2025 21:13:05] code 404, message File not found 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:32899 ./ InRelease 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:32899 ./ Release [462 B] 127.0.0.1 - - [28/Jul/2025 21:13:05] code 404, message File not found 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:32899 ./ Release.gpg 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:32899 ./ Packages [205 kB] Fetched 205 kB in 0s (6554 kB/s) Reading package lists... usr-is-merged found -- running merged-usr setup hook dpkg-deb: building package 'usr-is-merged' in '/srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ/tmp/tmp.eY5t5Ougtw/usr-is-merged.deb'. Selecting previously unselected package usr-is-merged. (Reading database ... 0 files and directories currently installed.) Preparing to unpack .../usr-is-merged.deb ... Unpacking usr-is-merged (1) ... touch: cannot touch '/run/needrestart/unpacked': Permission denied Setting up usr-is-merged (1) ... I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./gcc-13-base_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libc6_2.37-8_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libgcc-s1_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./mawk_1.3.4.20230808-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./base-files_13_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libtinfo6_6.4%2b20230625-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./debianutils_5.12_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./bash_5.2.15-2%2bb4_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libcap2_2.66-4_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libgpg-error0_1.47-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libgcrypt20_1.10.2-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./liblz4-1_1.9.4-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./liblzma5_5.4.4-0.1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libzstd1_1.5.5%2bdfsg2-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libsystemd0_254.1-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./bsdutils_2.39.2-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libacl1_2.3.1-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libattr1_2.5.1-4_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libgmp10_6.3.0%2bdfsg-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libpcre2-8-0_10.42-4_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libselinux1_3.5-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./coreutils_9.1-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libbz2-1.0_1.0.8-5%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libmd0_1.1.0-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./zlib1g_1.2.13.dfsg-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./tar_1.34%2bdfsg-1.2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./dpkg_1.22.0_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./dash_0.5.12-6_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./diffutils_3.8-4_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./findutils_4.9.0-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./grep_3.11-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./gzip_1.12-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./hostname_3.23%2bnmu1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libaudit-common_3.1.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libcap-ng0_0.8.3-1%2bb3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libaudit1_3.1.1-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libcrypt1_4.4.36-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./debconf_1.5.82_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libpam0g_1.5.2-7_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libdb5.3_5.3.28%2bdfsg2-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libpam-modules-bin_1.5.2-7_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libpam-modules_1.5.2-7_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libpam-runtime_1.5.2-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./login_4.13%2bdfsg1-1%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./ncurses-bin_6.4%2b20230625-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./perl-base_5.36.0-9_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./sed_4.9-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libblkid1_2.39.2-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libmount1_2.39.2-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libsmartcols1_2.39.2-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libudev1_254.1-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libuuid1_2.39.2-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./util-linux_2.39.2-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libdebconfclient0_0.270_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./base-passwd_3.6.1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./init-system-helpers_1.65.2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./libc-bin_2.37-8_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./ncurses-base_6.4%2b20230625-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:05] "GET /./sysvinit-utils_3.07-1_i386.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ 127.0.0.1 - - [28/Jul/2025 21:13:07] code 404, message File not found 127.0.0.1 - - [28/Jul/2025 21:13:07] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:32899 ./ InRelease 127.0.0.1 - - [28/Jul/2025 21:13:07] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:32899 ./ Release 127.0.0.1 - - [28/Jul/2025 21:13:07] code 404, message File not found 127.0.0.1 - - [28/Jul/2025 21:13:07] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:32899 ./ Release.gpg Reading package lists... usr-is-merged found -- running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ dummy usr-is-merged package installed -- running merged-usr essential hook Reading package lists... Building dependency tree... The following packages will be upgraded: usr-is-merged 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./usr-is-merged_37_all.deb HTTP/1.1" 200 - 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5560 B of archives. After this operation, 13.3 kB of additional disk space will be used. Get:1 http://localhost:32899 ./ usr-is-merged 37 [5560 B] Fetched 5560 B in 0s (0 B/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ/ (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 3713 files and directories currently installed.) Preparing to unpack .../usr-is-merged_37_all.deb ... Unpacking usr-is-merged (37) over (1) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ/ Setting up usr-is-merged (37) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ/ I: installing remaining packages inside the chroot... 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./perl-modules-5.36_5.36.0-9_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libgdbm6_1.23-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libgdbm-compat4_1.23-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libperl5.36_5.36.0-9_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./perl_5.36.0-9_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libssl3_3.0.10-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libpython3.11-minimal_3.11.5-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libexpat1_2.5.0-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./python3.11-minimal_3.11.5-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./python3-minimal_3.11.4-5%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./media-types_10.1.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./tzdata_2023c-10_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libffi8_3.4.4-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libncursesw6_6.4%2b20230625-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libcom-err2_1.47.0-2%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libkrb5support0_1.20.1-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libk5crypto3_1.20.1-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libkeyutils1_1.6.3-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libkrb5-3_1.20.1-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libgssapi-krb5-2_1.20.1-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libtirpc-common_1.3.3%2bds-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libtirpc3_1.3.3%2bds-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libnsl2_1.3.0-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./readline-common_8.2-1.3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libreadline8_8.2-1.3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libsqlite3-0_3.43.1-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libpython3.11-stdlib_3.11.5-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./python3.11_3.11.5-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libpython3-stdlib_3.11.4-5%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./python3_3.11.4-5%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libnumber-compare-perl_0.03-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libtext-glob-perl_0.11-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libfile-find-rule-perl_0.34-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./usrmerge_37_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./sensible-utils_0.0.20_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libstdc%2b%2b6_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libuchardet0_0.0.7-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./groff-base_1.23.0-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./bsdextrautils_2.39.2-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libpipeline1_1.5.7-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libseccomp2_2.5.4-1%2bb3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./man-db_2.11.2-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./bzip2_1.0.8-5%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libmagic-mgc_5.45-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libmagic1_5.45-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./file_5.45-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./gettext-base_0.21-13%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./xz-utils_5.4.4-0.1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./m4_1.4.19-4_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./autoconf_2.71-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./autotools-dev_20220109.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./automake_1.16.5-1.3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./autopoint_0.21-13_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./binutils-common_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libsframe1_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libbinutils_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libctf-nobfd0_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libctf0_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libgprofng0_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libjansson4_2.14-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./binutils-i686-linux-gnu_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./binutils_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libc-dev-bin_2.37-8_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./linux-libc-dev_6.4.13-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libcrypt-dev_4.4.36-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libtirpc-dev_1.3.3%2bds-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libnsl-dev_1.3.0-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./rpcsvc-proto_1.4.3-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libc6-dev_2.37-8_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libisl23_0.26-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libmpfr6_4.2.1-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libmpc3_1.3.1-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./cpp-13_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./cpp_13.2.0-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libcc1-0_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libgomp1_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libitm1_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libatomic1_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libasan8_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libubsan1_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libquadmath0_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./libgcc-13-dev_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:32] "GET /./gcc-13_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./gcc_13.2.0-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libstdc%2b%2b-13-dev_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./g%2b%2b-13_13.2.0-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./g%2b%2b_13.2.0-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./make_4.3-4.1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libdpkg-perl_1.22.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./patch_2.7.6-7_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./dpkg-dev_1.22.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./build-essential_12.10_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libdebhelper-perl_13.11.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libtool_2.4.7-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./dh-autoreconf_20_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libsub-override-perl_0.09-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libfile-stripnondeterminism-perl_1.13.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./dh-strip-nondeterminism_1.13.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libelf1_0.189-4_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./dwz_0.15-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libunistring5_1.1-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libicu72_72.1-3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libxml2_2.9.14%2bdfsg-1.3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./gettext_0.21-13%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./debhelper_13.11.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libdivsufsort3_2.0.1-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./libdivsufsort-dev_2.0.1-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [28/Jul/2025 21:13:33] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpb97h43o1/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ Reading package lists... Building dependency tree... Reading state information... bash is already the newest version (5.2.15-2+b4). hostname is already the newest version (3.23+nmu1). libatomic1 is already the newest version (13.2.0-3). libatomic1 set to manually installed. libitm1 is already the newest version (13.2.0-3). libitm1 set to manually installed. libnsl-dev is already the newest version (1.3.0-2). libnsl-dev set to manually installed. libpam0g is already the newest version (1.5.2-7). zlib1g is already the newest version (1:1.2.13.dfsg-3). liblzma5 is already the newest version (5.4.4-0.1). dash is already the newest version (0.5.12-6). usrmerge is already the newest version (37). usrmerge set to manually installed. gcc-13 is already the newest version (13.2.0-3). gcc-13 set to manually installed. debhelper is already the newest version (13.11.6). debhelper set to manually installed. libperl5.36 is already the newest version (5.36.0-9). libperl5.36 set to manually installed. libjansson4 is already the newest version (2.14-2). libjansson4 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-5+b1). libctf-nobfd0 is already the newest version (2.41-5). libctf-nobfd0 set to manually installed. base-passwd is already the newest version (3.6.1). libc6 is already the newest version (2.37-8). media-types is already the newest version (10.1.0). media-types set to manually installed. man-db is already the newest version (2.11.2-3). man-db set to manually installed. libc6-dev is already the newest version (2.37-8). libc6-dev set to manually installed. libtool is already the newest version (2.4.7-7). libtool set to manually installed. liblz4-1 is already the newest version (1.9.4-1). dh-strip-nondeterminism is already the newest version (1.13.1-1). dh-strip-nondeterminism set to manually installed. libpython3.11-stdlib is already the newest version (3.11.5-3). libpython3.11-stdlib set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-2). libselinux1 is already the newest version (3.5-1). libicu72 is already the newest version (72.1-3). libicu72 set to manually installed. libmagic1 is already the newest version (1:5.45-2). libmagic1 set to manually installed. usr-is-merged is already the newest version (37). libmpfr6 is already the newest version (4.2.1-1). libmpfr6 set to manually installed. libxml2 is already the newest version (2.9.14+dfsg-1.3). libxml2 set to manually installed. libbinutils is already the newest version (2.41-5). libbinutils set to manually installed. libfile-find-rule-perl is already the newest version (0.34-3). libfile-find-rule-perl set to manually installed. libgcc-s1 is already the newest version (13.2.0-3). tar is already the newest version (1.34+dfsg-1.2). python3-minimal is already the newest version (3.11.4-5+b1). python3-minimal set to manually installed. libsframe1 is already the newest version (2.41-5). libsframe1 set to manually installed. dwz is already the newest version (0.15-1). dwz set to manually installed. binutils-common is already the newest version (2.41-5). binutils-common set to manually installed. libsystemd0 is already the newest version (254.1-3). m4 is already the newest version (1.4.19-4). m4 set to manually installed. sensible-utils is already the newest version (0.0.20). sensible-utils set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. python3.11-minimal is already the newest version (3.11.5-3). python3.11-minimal set to manually installed. python3 is already the newest version (3.11.4-5+b1). python3 set to manually installed. libdivsufsort3 is already the newest version (2.0.1-5). libdivsufsort3 set to manually installed. perl-base is already the newest version (5.36.0-9). libssl3 is already the newest version (3.0.10-1). libssl3 set to manually installed. cpp-13 is already the newest version (13.2.0-3). cpp-13 set to manually installed. sysvinit-utils is already the newest version (3.07-1). build-essential is already the newest version (12.10). build-essential set to manually installed. libnumber-compare-perl is already the newest version (0.03-3). libnumber-compare-perl set to manually installed. libaudit1 is already the newest version (1:3.1.1-1). libzstd1 is already the newest version (1.5.5+dfsg2-1). libtinfo6 is already the newest version (6.4+20230625-2). perl-modules-5.36 is already the newest version (5.36.0-9). perl-modules-5.36 set to manually installed. autoconf is already the newest version (2.71-3). autoconf set to manually installed. libudev1 is already the newest version (254.1-3). readline-common is already the newest version (8.2-1.3). readline-common set to manually installed. libc-dev-bin is already the newest version (2.37-8). libc-dev-bin set to manually installed. libdebhelper-perl is already the newest version (13.11.6). libdebhelper-perl set to manually installed. libattr1 is already the newest version (1:2.5.1-4). bsdutils is already the newest version (1:2.39.2-1). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libexpat1 is already the newest version (2.5.0-2). libexpat1 set to manually installed. ncurses-base is already the newest version (6.4+20230625-2). cpp is already the newest version (4:13.2.0-1). cpp set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libasan8 is already the newest version (13.2.0-3). libasan8 set to manually installed. libaudit-common is already the newest version (1:3.1.1-1). libcom-err2 is already the newest version (1.47.0-2+b1). libcom-err2 set to manually installed. bsdextrautils is already the newest version (2.39.2-1). bsdextrautils set to manually installed. libnsl2 is already the newest version (1.3.0-2). libnsl2 set to manually installed. libncursesw6 is already the newest version (6.4+20230625-2). libncursesw6 set to manually installed. libmount1 is already the newest version (2.39.2-1). automake is already the newest version (1:1.16.5-1.3). automake set to manually installed. groff-base is already the newest version (1.23.0-2). groff-base set to manually installed. libgpg-error0 is already the newest version (1.47-2). make is already the newest version (4.3-4.1). make set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. gcc is already the newest version (4:13.2.0-1). gcc set to manually installed. libctf0 is already the newest version (2.41-5). libctf0 set to manually installed. libgdbm6 is already the newest version (1.23-3). libgdbm6 set to manually installed. xz-utils is already the newest version (5.4.4-0.1). xz-utils set to manually installed. libdpkg-perl is already the newest version (1.22.0). libdpkg-perl set to manually installed. gettext-base is already the newest version (0.21-13+b1). gettext-base set to manually installed. libmagic-mgc is already the newest version (1:5.45-2). libmagic-mgc set to manually installed. libgcc-13-dev is already the newest version (13.2.0-3). libgcc-13-dev set to manually installed. tzdata is already the newest version (2023c-10). tzdata set to manually installed. libcap2 is already the newest version (1:2.66-4). login is already the newest version (1:4.13+dfsg1-1+b1). dpkg is already the newest version (1.22.0). libcrypt-dev is already the newest version (1:4.4.36-2). libcrypt-dev set to manually installed. libdebconfclient0 is already the newest version (0.270). libkeyutils1 is already the newest version (1.6.3-2). libkeyutils1 set to manually installed. libdb5.3 is already the newest version (5.3.28+dfsg2-2). python3.11 is already the newest version (3.11.5-3). python3.11 set to manually installed. libc-bin is already the newest version (2.37-8). autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. libcrypt1 is already the newest version (1:4.4.36-2). sed is already the newest version (4.9-1). binutils is already the newest version (2.41-5). binutils set to manually installed. perl is already the newest version (5.36.0-9). perl set to manually installed. libcap-ng0 is already the newest version (0.8.3-1+b3). libsqlite3-0 is already the newest version (3.43.1-1). libsqlite3-0 set to manually installed. libffi8 is already the newest version (3.4.4-1). libffi8 set to manually installed. libisl23 is already the newest version (0.26-3). libisl23 set to manually installed. coreutils is already the newest version (9.1-1). ncurses-bin is already the newest version (6.4+20230625-2). debconf is already the newest version (1.5.82). libpam-runtime is already the newest version (1.5.2-7). autopoint is already the newest version (0.21-13). autopoint set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.13.1-1). libfile-stripnondeterminism-perl set to manually installed. libkrb5-3 is already the newest version (1.20.1-3). libkrb5-3 set to manually installed. gettext is already the newest version (0.21-13+b1). gettext set to manually installed. libmd0 is already the newest version (1.1.0-1). libelf1 is already the newest version (0.189-4). libelf1 set to manually installed. binutils-i686-linux-gnu is already the newest version (2.41-5). binutils-i686-linux-gnu set to manually installed. findutils is already the newest version (4.9.0-5). libsub-override-perl is already the newest version (0.09-4). libsub-override-perl set to manually installed. libtext-glob-perl is already the newest version (0.11-3). libtext-glob-perl set to manually installed. libpipeline1 is already the newest version (1.5.7-1). libpipeline1 set to manually installed. libk5crypto3 is already the newest version (1.20.1-3). libk5crypto3 set to manually installed. libgprofng0 is already the newest version (2.41-5). libgprofng0 set to manually installed. libreadline8 is already the newest version (8.2-1.3). libreadline8 set to manually installed. libgssapi-krb5-2 is already the newest version (1.20.1-3). libgssapi-krb5-2 set to manually installed. libunistring5 is already the newest version (1.1-2). libunistring5 set to manually installed. diffutils is already the newest version (1:3.8-4). util-linux is already the newest version (2.39.2-1). libpython3-stdlib is already the newest version (3.11.4-5+b1). libpython3-stdlib set to manually installed. libseccomp2 is already the newest version (2.5.4-1+b3). libseccomp2 set to manually installed. libgomp1 is already the newest version (13.2.0-3). libgomp1 set to manually installed. libuuid1 is already the newest version (2.39.2-1). gcc-13-base is already the newest version (13.2.0-3). base-files is already the newest version (13). init-system-helpers is already the newest version (1.65.2). libgcrypt20 is already the newest version (1.10.2-2). libpam-modules-bin is already the newest version (1.5.2-7). libpam-modules is already the newest version (1.5.2-7). libtirpc-common is already the newest version (1.3.3+ds-1). libtirpc-common set to manually installed. dpkg-dev is already the newest version (1.22.0). dpkg-dev set to manually installed. libstdc++-13-dev is already the newest version (13.2.0-3). libstdc++-13-dev set to manually installed. gzip is already the newest version (1.12-1). libstdc++6 is already the newest version (13.2.0-3). libstdc++6 set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. g++ is already the newest version (4:13.2.0-1). g++ set to manually installed. mawk is already the newest version (1.3.4.20230808-1). file is already the newest version (1:5.45-2). file set to manually installed. libacl1 is already the newest version (2.3.1-3). libblkid1 is already the newest version (2.39.2-1). libsmartcols1 is already the newest version (2.39.2-1). libtirpc3 is already the newest version (1.3.3+ds-1). libtirpc3 set to manually installed. libtirpc-dev is already the newest version (1.3.3+ds-1). libtirpc-dev set to manually installed. libkrb5support0 is already the newest version (1.20.1-3). libkrb5support0 set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. debianutils is already the newest version (5.12). libpcre2-8-0 is already the newest version (10.42-4). libubsan1 is already the newest version (13.2.0-3). libubsan1 set to manually installed. libuchardet0 is already the newest version (0.0.7-1). libuchardet0 set to manually installed. grep is already the newest version (3.11-3). g++-13 is already the newest version (13.2.0-3). g++-13 set to manually installed. libgdbm-compat4 is already the newest version (1.23-3). libgdbm-compat4 set to manually installed. linux-libc-dev is already the newest version (6.4.13-1). linux-libc-dev set to manually installed. libquadmath0 is already the newest version (13.2.0-3). libquadmath0 set to manually installed. libcc1-0 is already the newest version (13.2.0-3). libcc1-0 set to manually installed. libmpc3 is already the newest version (1.3.1-1). libmpc3 set to manually installed. libdivsufsort-dev is already the newest version (2.0.1-5). libdivsufsort-dev set to manually installed. libpython3.11-minimal is already the newest version (3.11.5-3). libpython3.11-minimal set to manually installed. bzip2 is already the newest version (1.0.8-5+b1). bzip2 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ (Reading database ... 13228 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: PID 2831 exited with exit code 0 I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.PNJN7yYlAJ... I: success in 86.9598 seconds Downloading dependency 139 of 170: libpam-modules-bin:i386=1.5.2-7 Downloading dependency 140 of 170: libpam-modules:i386=1.5.2-7 Downloading dependency 141 of 170: libtirpc-common:i386=1.3.3+ds-1 Downloading dependency 142 of 170: dpkg-dev:i386=1.22.0 Downloading dependency 143 of 170: libstdc++-13-dev:i386=13.2.0-3 Downloading dependency 144 of 170: gzip:i386=1.12-1 Downloading dependency 145 of 170: libstdc++6:i386=13.2.0-3 Downloading dependency 146 of 170: po-debconf:i386=1.0.21+nmu1 Downloading dependency 147 of 170: g++:i386=4:13.2.0-1 Downloading dependency 148 of 170: mawk:i386=1.3.4.20230808-1 Downloading dependency 149 of 170: file:i386=1:5.45-2 Downloading dependency 150 of 170: libacl1:i386=2.3.1-3 Downloading dependency 151 of 170: libblkid1:i386=2.39.2-1 Downloading dependency 152 of 170: libsmartcols1:i386=2.39.2-1 Downloading dependency 153 of 170: libtirpc3:i386=1.3.3+ds-1 Downloading dependency 154 of 170: libtirpc-dev:i386=1.3.3+ds-1 Downloading dependency 155 of 170: libkrb5support0:i386=1.20.1-3 Downloading dependency 156 of 170: dh-autoreconf:i386=20 Downloading dependency 157 of 170: debianutils:i386=5.12 Downloading dependency 158 of 170: libpcre2-8-0:i386=10.42-4 Downloading dependency 159 of 170: libubsan1:i386=13.2.0-3 Downloading dependency 160 of 170: libuchardet0:i386=0.0.7-1 Downloading dependency 161 of 170: grep:i386=3.11-3 Downloading dependency 162 of 170: g++-13:i386=13.2.0-3 Downloading dependency 163 of 170: libgdbm-compat4:i386=1.23-3 Downloading dependency 164 of 170: linux-libc-dev:i386=6.4.13-1 Downloading dependency 165 of 170: libquadmath0:i386=13.2.0-3 Downloading dependency 166 of 170: libcc1-0:i386=13.2.0-3 Downloading dependency 167 of 170: libmpc3:i386=1.3.1-1 Downloading dependency 168 of 170: libdivsufsort-dev:i386=2.0.1-5 Downloading dependency 169 of 170: libpython3.11-minimal:i386=3.11.5-3 Downloading dependency 170 of 170: bzip2:i386=1.0.8-5+b1 env --chdir=/srv/rebuilderd/tmp/rebuilderda40T05/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 SOURCE_DATE_EPOCH=1694765326 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuild0dc6oP/debrebuild.sbuildrc.3Ara_GW8x1XY sbuild --build=i386 --host=i386 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuild0dc6oP/debrebuild.tar.gH3EVsy6_IDn --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=hmmer-3.4+dfsg /srv/rebuilderd/tmp/rebuilderda40T05/inputs/hmmer_3.4+dfsg-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3 (07 June 2025) on infom08-amd64 +==============================================================================+ | hmmer 3.4+dfsg-2 (i386) Mon, 28 Jul 2025 21:14:32 +0000 | +==============================================================================+ Package: hmmer Version: 3.4+dfsg-2 Source Version: 3.4+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuild0dc6oP/debrebuild.tar.gH3EVsy6_IDn to /srv/rebuilderd/tmp/tmp.sbuild.cVR1YIBC1T... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Mon, 28 Jul 2025 21:14:39 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderda40T05/inputs/hmmer_3.4+dfsg-2.dsc exists in /srv/rebuilderd/tmp/rebuilderda40T05/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 28 Jul 2025 21:14:41 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential Filtered Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-V3oIXc/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Mon, 28 Jul 2025 21:14:44 +0000 | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment Mon, 28 Jul 2025 21:14:44 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.38+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.38-1 (2025-07-16) amd64 (x86_64) Toolchain package versions: binutils_2.41-5 dpkg-dev_1.22.0 g++-13_13.2.0-3 gcc-13_13.2.0-3 libc6-dev_2.37-8 libstdc++-13-dev_13.2.0-3 libstdc++6_13.2.0-3 linux-libc-dev_6.4.13-1 Package versions: autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b4 binutils_2.41-5 binutils-common_2.41-5 binutils-i686-linux-gnu_2.41-5 bsdextrautils_2.39.2-1 bsdutils_1:2.39.2-1 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:13.2.0-1 cpp-13_13.2.0-3 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.6 debianutils_5.12 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.22.0 dpkg-dev_1.22.0 dwz_0.15-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1 g++-13_13.2.0-3 gcc_4:13.2.0-1 gcc-13_13.2.0-3 gcc-13-base_13.2.0-3 gettext_0.21-13+b1 gettext-base_0.21-13+b1 grep_3.11-3 groff-base_1.23.0-2 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libarchive-zip-perl_1.68-1 libasan8_13.2.0-3 libatomic1_13.2.0-3 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-5 libblkid1_2.39.2-1 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-8 libc-dev-bin_2.37-8 libc6_2.37-8 libc6-dev_2.37-8 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_13.2.0-3 libcom-err2_1.47.0-2+b1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-5 libctf0_2.41-5 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdivsufsort-dev_2.0.1-5 libdivsufsort3_2.0.1-5 libdpkg-perl_1.22.0 libelf1_0.189-4 libexpat1_2.5.0-2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-3 libgcc-s1_13.2.0-3 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgomp1_13.2.0-3 libgpg-error0_1.47-2 libgprofng0_2.41-5 libgssapi-krb5-2_1.20.1-3 libicu72_72.1-3 libisl23_0.26-3 libitm1_13.2.0-3 libjansson4_2.14-2 libk5crypto3_1.20.1-3 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-3 libkrb5support0_1.20.1-3 liblz4-1_1.9.4-1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20230625-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpython3-stdlib_3.11.4-5+b1 libpython3.11-minimal_3.11.5-3 libpython3.11-stdlib_3.11.5-3 libquadmath0_13.2.0-3 libreadline8_8.2-1.3 libseccomp2_2.5.4-1+b3 libselinux1_3.5-1 libsframe1_2.41-5 libsmartcols1_2.39.2-1 libsqlite3-0_3.43.1-1 libssl3_3.0.10-1 libstdc++-13-dev_13.2.0-3 libstdc++6_13.2.0-3 libsub-override-perl_0.09-4 libsystemd0_254.1-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-3 libuchardet0_0.0.7-1 libudev1_254.1-3 libunistring5_1.1-2 libuuid1_2.39.2-1 libxml2_2.9.14+dfsg-1.3 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.4.13-1 login_1:4.13+dfsg1-1+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 media-types_10.1.0 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 po-debconf_1.0.21+nmu1 python3_3.11.4-5+b1 python3-minimal_3.11.4-5+b1 python3.11_3.11.5-3 python3.11-minimal_3.11.5-3 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 usr-is-merged_37 usrmerge_37 util-linux_2.39.2-1 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 +------------------------------------------------------------------------------+ | Build Mon, 28 Jul 2025 21:14:44 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hmmer Binary: hmmer, hmmer-doc, hmmer-examples Architecture: any all Version: 3.4+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://hmmer.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/hmmer Vcs-Git: https://salsa.debian.org/med-team/hmmer.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3 Package-List: hmmer deb science optional arch=any-amd64,any-i386,arm64,powerpc,ppc64,x32 hmmer-doc deb doc optional arch=all hmmer-examples deb doc optional arch=any Checksums-Sha1: 69590adb499ca8e4eea9d2ed10fb66ae42e82ea8 13297988 hmmer_3.4+dfsg.orig.tar.xz 0fdc1387c061446ae90aa1bad78311b91d9613be 12792 hmmer_3.4+dfsg-2.debian.tar.xz Checksums-Sha256: 87ada77366ed6ab0159a0c1217f8a55cbe9a708c4a98cf644929eb3703ce3309 13297988 hmmer_3.4+dfsg.orig.tar.xz 5f49627af6a005157803c635a39d6be1ab002135bb6d3082408ac1a718858cd4 12792 hmmer_3.4+dfsg-2.debian.tar.xz Files: ac66418b48c613d96d43770f971a22d3 13297988 hmmer_3.4+dfsg.orig.tar.xz 052bc782e23681c65ad490638bc541c4 12792 hmmer_3.4+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmUEEYcACgkQPCZ2P2xn 5uJeeA//QPIKXLp1rvwSccWCMJj318Vrd0delJgACzsfhnxnNyUsZ5aBUWwefLvY 1EfijVSrLpR55GC+4QsLVxwgDEEPbR2pHh0ZoVFhPDisRf7SQe2wCQBDrdmLYdPR KKcQC19wj+yb+fEcemulJ9EXiFMknEpdZeYS9ijtedU7hWJCNtU/2Bf5oSAhEuJC w4NZuVk6NAHGnzd6/+f/zcZwV4TJBwCc2E8Sq/UtSmZbQQclz4wcdow65Mpd9Eon Da0R43hDQWTmuumdix1wPaXhZl5vLd01ErhIKiL6UwpicEz29Zv2dTIfVyYdRuTT Qn0wXpqK7T/zrKE9GxNRCMljTCv4RV++J2rKu9IJlyI5zNVfqyXjhBB2ONupXVVM PwKOLf+g/z6u6/aapusuzAEP6Nwv7ylz0Q2X9A1c9c/+IAAqRgi9n+Y7FBoI6dDl f43j1+bLy4TwmdP0Ywl+KhodVEU1Rw6ksem1X5uNVe+P+3Xd5v19vlwaB4n1Q/d5 0/8wlKEPtutA9yW9/nAj7FnJ00npHJ1B7Jx7OI8KWtiSnK42nRUrbtVpmZSEKqs3 z3QtzSNrRlL0NcPSxSKVv6WrMUniWyacMC8mXUm0dpnjwK9m4OdFDrgAo2OdDv1g 1o/SUWLxlaOL9D8U48y9Lg9sYqZubR2aqYTJK2BBrFD4FoHDcgc= =/sML -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./hmmer_3.4+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting hmmer in /build/reproducible-path/hmmer-3.4+dfsg dpkg-source: info: unpacking hmmer_3.4+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer_3.4+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_extension.patch dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying verbose-easel dpkg-source: info: applying skip_threads_check dpkg-source: info: applying sub_make_parallel dpkg-source: info: applying spelling Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/reproducible-path/resolver-V3oIXc/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 28 Jul 2025 21:14:49 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/hmmer-3.4+dfsg/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/hmmer-3.4+dfsg/debian/control" ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/hmmer-3.4+dfsg/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/hmmer-3.4+dfsg/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1694765326 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.4+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? rm -f config.log config.status configure find . -name Makefile -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' AUTOHEADER=true dh_autoreconf make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" dh_auto_configure -- --enable-threads ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads configure: Configuring HMMER3 for your system. checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our NEON code... no checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... yes, with -msse2 configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for netinet/in.h... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_sse to src/impl HMMER configuration: compiler: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -msse2 -pthread host: i686-pc-linux-gnu linker: -Wl,-z,relro -Wl,-z,now -flto libraries: -lpthread DP implementation: sse Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' export V=VERBOSE ; dh_auto_build make -j6 make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c easel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_alloc.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_alphabet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_arr2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_arr3.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_bitfield.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_buffer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_cluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_composition.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_cpu.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_dirichlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_distance.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_dmatrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_dsqdata.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_exponential.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_fileparser.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_gamma.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_gencode.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_getopts.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_gev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_graph.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_gumbel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_heap.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_histogram.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_hmm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_huffman.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_hyperexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_iset.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_json.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_keyhash.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_lognormal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_matrixops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_mem.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_minimizer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_mixdchlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_mixgev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_mpi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msacluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_a2m.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_afa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_clustal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_phylip.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_psiblast.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_selex.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msafile_stockholm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msashuffle.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_msaweight.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_normal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_paml.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_quicksort.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_random.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_rand64.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_randomseq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_ratematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_recorder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_red_black.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_regexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_rootfinder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_scorematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sqio.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sqio_ascii.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_sqio_ncbi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_ssi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_stack.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_stats.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_stopwatch.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_stretchexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_subcmd.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_threads.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_tree.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_varint.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_vectorops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_weibull.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_workqueue.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_wuss.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -c esl_sse.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_avx.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_avx512.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_neon.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_iset.o esl_json.o esl_keyhash.o esl_lognormal.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lpthread -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_filter.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domain.o -c p7_domain.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hit.o -c p7_hit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_ssv.o -c fm_ssv.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o io.o -c io.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 6 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C profmark all make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -msse2 -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lpthread -lm ../easel/esl_ssi.h:115:13: warning: type of ‘esl_ssi_FindNumber’ does not match original declaration [-Wlto-type-mismatch] 115 | extern int esl_ssi_FindNumber(ESL_SSI *ssi, int64_t nkey, | ^ ../easel/esl_ssi.c:253:1: note: ‘esl_ssi_FindNumber’ was previously declared here 253 | esl_ssi_FindNumber(ESL_SSI *ssi, int64_t nkey, uint16_t *opt_fh, off_t *opt_roff, off_t *opt_doff, int64_t *opt_L, char **opt_pkey) | ^ ../easel/esl_ssi.c:253:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -msse2 -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lpthread -lm make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' export V=VERBOSE ; make check -j8 | tee debian/test_log make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make -C easel tests make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alloc_utest -I. -I. -L. -DeslALLOC_TESTDRIVE ./esl_alloc.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_bitfield_utest -I. -I. -L. -DeslBITFIELD_TESTDRIVE ./esl_bitfield.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cpu_utest -I. -I. -L. -DeslCPU_TESTDRIVE ./esl_cpu.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_graph_utest -I. -I. -L. -DeslGRAPH_TESTDRIVE ./esl_graph.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_huffman_utest -I. -I. -L. -DeslHUFFMAN_TESTDRIVE ./esl_huffman.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_iset_utest -I. -I. -L. -DeslISET_TESTDRIVE ./esl_iset.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_json_utest -I. -I. -L. -DeslJSON_TESTDRIVE ./esl_json.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_lognormal_utest -I. -I. -L. -DeslLOGNORMAL_TESTDRIVE ./esl_lognormal.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_matrixops_utest -I. -I. -L. -DeslMATRIXOPS_TESTDRIVE ./esl_matrixops.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_minimizer_utest -I. -I. -L. -DeslMINIMIZER_TESTDRIVE ./esl_minimizer.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mixdchlet_utest -I. -I. -L. -DeslMIXDCHLET_TESTDRIVE ./esl_mixdchlet.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_quicksort_utest -I. -I. -L. -DeslQUICKSORT_TESTDRIVE ./esl_quicksort.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rand64_utest -I. -I. -L. -DeslRAND64_TESTDRIVE ./esl_rand64.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_red_black_utest -I. -I. -L. -DeslRED_BLACK_TESTDRIVE ./esl_red_black.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm -lpthread lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_varint_utest -I. -I. -L. -DeslVARINT_TESTDRIVE ./esl_varint.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx_utest -I. -I. -L. -DeslAVX_TESTDRIVE ./esl_avx.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx512_utest -I. -I. -L. -DeslAVX512_TESTDRIVE ./esl_avx512.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_neon_utest -I. -I. -L. -DeslNEON_TESTDRIVE ./esl_neon.c -leasel -lm -lpthread gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vmx_utest -I. -I. -L. -DeslVMX_TESTDRIVE ./esl_vmx.c -leasel -lm -lpthread make -C miniapps tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C src tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7DOMAIN_TESTDRIVE -o p7_domain_utest ./p7_domain.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HIT_TESTDRIVE -o p7_hit_utest ./p7_hit.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATS_TESTDRIVE -o p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lpthread -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATUS_TESTDRIVE -o hmmd_search_status_utest ./hmmd_search_status.c -lhmmer -leasel -ldivsufsort -lpthread -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lpthread -lm make -C impl_sse tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -pthread -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src/impl_sse' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C easel check make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make -C miniapps check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/miniapps' make -C testsuite check make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ iset-utest] ... ok. exercise 26 [ json-utest] ... ok. exercise 27 [ keyhash-utest] ... ok. exercise 28 [ lognormal-utest] ... ok. exercise 29 [ matrixops-utest] ... ok. exercise 30 [ mem-utest] ... ok. exercise 31 [ minimizer-utest] ... ok. exercise 32 [ mixdchlet-utest] ... ok. exercise 33 [ msa-utest] ... ok. exercise 34 [ msacluster-utest] ... ok. exercise 35 [ msafile] ... ok. exercise 36 [ msafile2] ... ok. exercise 37 [ msafile-a2m] ... ok. exercise 38 [ msafile-afa] ... ok. exercise 39 [ msafile-clustal] ... ok. exercise 40 [ msafile-phylip] ... ok. exercise 41 [ msafile-psiblast] ... ok. exercise 42 [ msafile-selex] ... ok. exercise 43 [ msafile-stockholm] ... ok. exercise 44 [ msaweight-utest] ... ok. exercise 45 [ neon-utest] ... ok. exercise 46 [ normal-utest] ... ok. exercise 47 [ quicksort-utest] ... ok. exercise 48 [ random-utest] ... ok. exercise 49 [ rand64-utest] ... ok. exercise 50 [ randomseq-utest] ... ok. exercise 51 [ ratematrix-utest] ... ok. exercise 52 [ recorder-utest] ... ok. exercise 53 [ red_black-utest] ... ok. exercise 54 [ regexp-utest] ... ok. exercise 55 [ rootfinder-utest] ... ok. exercise 56 [ scorematrix-utest] ... ok. exercise 57 [ sq-utest] ... ok. exercise 58 [ sqio-utest] ... ok. exercise 59 [ sse-utest] ... ok. exercise 60 [ ssi-utest] ... ok. exercise 61 [ stack-utest] ... ok. exercise 62 [ stats-utest] ... ok. exercise 63 [ stretchexp-utest] ... ok. exercise 64 [ tree-utest] ... ok. exercise 65 [ varint-utest] ... ok. exercise 66 [ vectorops-utest] ... ok. exercise 67 [ vmx-utest] ... ok. exercise 68 [ weibull-utest] ... ok. exercise 69 [ wuss-utest] ... ok. exercise 70 [ e2] ... ok. exercise 71 [ degen-residues] ... ok. exercise 72 [ ncbi-indices] ... ok. exercise 73 [ blank-gf] ... ok. exercise 74 [ sindi] ... ok. exercise 75 [ esl-translate] ... ok. exercise 76 [ esl-afetch] ... ok. exercise 77 [ esl-alimanip] ... ok. exercise 78 [ esl-alimap] ... ok. exercise 79 [ esl-alimask] ... ok. exercise 80 [ esl-alimerge] ... ok. exercise 81 [ esl-alistat] ... ok. exercise 82 [ esl-compalign] ... ok. exercise 83 [ esl-construct] ... ok. exercise 84 [ esl-mask] ... ok. exercise 85 [ esl-seqrange] ... ok. exercise 86 [ esl-shuffle] ... ok. exercise 87 [ esl-ssdraw] ... ok. All 87 exercises at level <= 2 passed. System information: Mon Jul 28 21:27:09 UTC 2025 Linux sbuild 6.12.38+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.38-1 (2025-07-16) i686 GNU/Linux make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel/testsuite' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' make -C testsuite check make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... FAILED [command failed] exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. 1 of 307 exercises at level <= 2 FAILED. System information: Mon Jul 28 21:27:39 UTC 2025 Linux sbuild 6.12.38+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.38-1 (2025-07-16) i686 GNU/Linux make[3]: *** [Makefile:41: check] Error 1 make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/testsuite' make[2]: *** [Makefile:113: check] Error 2 make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_auto_install make -j6 install DESTDIR=/build/reproducible-path/hmmer-3.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' SUBDIR easel make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. SUBDIR miniapps make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/easel' SUBDIR src make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. SUBDIR impl_sse make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' SUBDIR profmark make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/profmark' if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin; fi if [ ! -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1 ]; then /usr/bin/install -c -d /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1; fi make -C src install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/bin/ ;\ done make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/src' make -C documentation install make[3]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make -C man install make[4]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /build/reproducible-path/hmmer-3.4+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation/man' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg/documentation' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/i386-linux-gnu/hmmer/ cp src/hmmc2 /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer/usr/lib/i386-linux-gnu/hmmer/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_installexamples mkdir -p /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \; find src/impl_sse -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \; cp src/itest_brute /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp src/hmmpress.itest.pl /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp -aR testsuite /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find easel -name "*.o" -delete cp -aR easel /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples cp -aR tutorial /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/build/reproducible-path/hmmer-3.4+dfsg^.^g" find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_compress -Xtutorial/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_fixperms find debian -name .dropbox.attr -delete find debian -name "*.fa" -executable -exec chmod -x \{\} \; find /build/reproducible-path/hmmer-3.4+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/hmmer-3.4+dfsg' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hmmer-dbgsym' in '../hmmer-dbgsym_3.4+dfsg-2_i386.deb'. dpkg-deb: building package 'hmmer' in '../hmmer_3.4+dfsg-2_i386.deb'. dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.4+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=any -O../hmmer_3.4+dfsg-2_i386.buildinfo dpkg-genchanges --build=any -O../hmmer_3.4+dfsg-2_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from hmmer-3.4+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-07-28T21:28:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 28 Jul 2025 21:28:13 +0000 | +------------------------------------------------------------------------------+ hmmer_3.4+dfsg-2_i386.changes: ------------------------------ Format: 1.8 Date: Fri, 15 Sep 2023 10:08:46 +0200 Source: hmmer Binary: hmmer hmmer-dbgsym hmmer-examples Architecture: i386 Version: 3.4+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-examples - profile hidden Markov models for protein sequence analysis (examp Changes: hmmer (3.4+dfsg-2) unstable; urgency=medium . * Team upload. * d/control: hmmer-examples contains arch-specific test programs, mark as "Architecture: any". Checksums-Sha1: 7ec960a23f11c7c58b2a3d8d4251318412d873e7 7509100 hmmer-dbgsym_3.4+dfsg-2_i386.deb 881c1df576f3fa7cb17dbfc9397611fff11f352d 31267836 hmmer-examples_3.4+dfsg-2_i386.deb 376114fbde22615549142d12cafd46da5ab58a4c 5772 hmmer_3.4+dfsg-2_i386.buildinfo 5dc47eec897fa7583a363c1c602d80e0ffdf783e 1093784 hmmer_3.4+dfsg-2_i386.deb Checksums-Sha256: 8d590e3620b70076ca5823bf537b78985db31b6a12e56b2331f116efb8cd1f3c 7509100 hmmer-dbgsym_3.4+dfsg-2_i386.deb 6799d0747a28c62c96bb165febbf05abec3d8559aae78b0d12ca7ac72913bbb0 31267836 hmmer-examples_3.4+dfsg-2_i386.deb 082cd7449e802b213a26331336d35ac569c2ec17b8ec1b9f755261f464388056 5772 hmmer_3.4+dfsg-2_i386.buildinfo ff28f18954161c0abbf6881b6f0c1787140a8acd53b8151969f044882b45dd91 1093784 hmmer_3.4+dfsg-2_i386.deb Files: 3ed5612acd27d5555c34a89c2d0fb89f 7509100 debug optional hmmer-dbgsym_3.4+dfsg-2_i386.deb 67d0c6049757144a45ab980150d90fe8 31267836 doc optional hmmer-examples_3.4+dfsg-2_i386.deb 602fd2f3431c829972b6ffcb26f5ca25 5772 science optional hmmer_3.4+dfsg-2_i386.buildinfo bff6014699a11cec190d7afe28716793 1093784 science optional hmmer_3.4+dfsg-2_i386.deb +------------------------------------------------------------------------------+ | Buildinfo Mon, 28 Jul 2025 21:28:14 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer Binary: hmmer hmmer-dbgsym hmmer-examples Architecture: i386 Version: 3.4+dfsg-2 Checksums-Md5: 3ed5612acd27d5555c34a89c2d0fb89f 7509100 hmmer-dbgsym_3.4+dfsg-2_i386.deb 67d0c6049757144a45ab980150d90fe8 31267836 hmmer-examples_3.4+dfsg-2_i386.deb bff6014699a11cec190d7afe28716793 1093784 hmmer_3.4+dfsg-2_i386.deb Checksums-Sha1: 7ec960a23f11c7c58b2a3d8d4251318412d873e7 7509100 hmmer-dbgsym_3.4+dfsg-2_i386.deb 881c1df576f3fa7cb17dbfc9397611fff11f352d 31267836 hmmer-examples_3.4+dfsg-2_i386.deb 5dc47eec897fa7583a363c1c602d80e0ffdf783e 1093784 hmmer_3.4+dfsg-2_i386.deb Checksums-Sha256: 8d590e3620b70076ca5823bf537b78985db31b6a12e56b2331f116efb8cd1f3c 7509100 hmmer-dbgsym_3.4+dfsg-2_i386.deb 6799d0747a28c62c96bb165febbf05abec3d8559aae78b0d12ca7ac72913bbb0 31267836 hmmer-examples_3.4+dfsg-2_i386.deb ff28f18954161c0abbf6881b6f0c1787140a8acd53b8151969f044882b45dd91 1093784 hmmer_3.4+dfsg-2_i386.deb Build-Origin: Debian Build-Architecture: i386 Build-Date: Mon, 28 Jul 2025 21:28:12 +0000 Build-Path: /build/reproducible-path/hmmer-3.4+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.1), bash (= 5.2.15-2+b4), binutils (= 2.41-5), binutils-common (= 2.41-5), binutils-i686-linux-gnu (= 2.41-5), bsdextrautils (= 2.39.2-1), bsdutils (= 1:2.39.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:13.2.0-1), cpp-13 (= 13.2.0-3), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.6), debianutils (= 5.12), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.22.0), dpkg-dev (= 1.22.0), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1), g++-13 (= 13.2.0-3), gcc (= 4:13.2.0-1), gcc-13 (= 13.2.0-3), gcc-13-base (= 13.2.0-3), gettext (= 0.21-13+b1), gettext-base (= 0.21-13+b1), grep (= 3.11-3), groff-base (= 1.23.0-2), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-3), libatomic1 (= 13.2.0-3), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-5), libblkid1 (= 2.39.2-1), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.37-8), libc-dev-bin (= 2.37-8), libc6 (= 2.37-8), libc6-dev (= 2.37-8), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.2.0-3), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-5), libctf0 (= 2.41-5), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.6), libdivsufsort-dev (= 2.0.1-5), libdivsufsort3 (= 2.0.1-5), libdpkg-perl (= 1.22.0), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-3), libgcc-s1 (= 13.2.0-3), libgcrypt20 (= 1.10.2-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-3), libgpg-error0 (= 1.47-2), libgprofng0 (= 2.41-5), libgssapi-krb5-2 (= 1.20.1-3), libicu72 (= 72.1-3), libisl23 (= 0.26-3), libitm1 (= 13.2.0-3), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-3), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3), libkrb5support0 (= 1.20.1-3), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.4-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20230625-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libpam-modules (= 1.5.2-7), libpam-modules-bin (= 1.5.2-7), libpam-runtime (= 1.5.2-7), libpam0g (= 1.5.2-7), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-9), libpipeline1 (= 1.5.7-1), libpython3-stdlib (= 3.11.4-5+b1), libpython3.11-minimal (= 3.11.5-3), libpython3.11-stdlib (= 3.11.5-3), libquadmath0 (= 13.2.0-3), libreadline8 (= 8.2-1.3), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.5-1), libsframe1 (= 2.41-5), libsmartcols1 (= 2.39.2-1), libsqlite3-0 (= 3.43.1-1), libssl3 (= 3.0.10-1), libstdc++-13-dev (= 13.2.0-3), libstdc++6 (= 13.2.0-3), libsub-override-perl (= 0.09-4), libsystemd0 (= 254.1-3), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libubsan1 (= 13.2.0-3), libuchardet0 (= 0.0.7-1), libudev1 (= 254.1-3), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-1), libxml2 (= 2.9.14+dfsg-1.3), libzstd1 (= 1.5.5+dfsg2-1), linux-libc-dev (= 6.4.13-1), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230808-1), media-types (= 10.1.0), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), patch (= 2.7.6-7), perl (= 5.36.0-9), perl-base (= 5.36.0-9), perl-modules-5.36 (= 5.36.0-9), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5+b1), python3-minimal (= 3.11.4-5+b1), python3.11 (= 3.11.5-3), python3.11-minimal (= 3.11.5-3), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1), tar (= 1.34+dfsg-1.2), tzdata (= 2023c-10), usr-is-merged (= 37), usrmerge (= 37), util-linux (= 2.39.2-1), xz-utils (= 5.4.4-0.1), zlib1g (= 1:1.2.13.dfsg-3) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1694765326" +------------------------------------------------------------------------------+ | Package contents Mon, 28 Jul 2025 21:28:14 +0000 | +------------------------------------------------------------------------------+ hmmer-dbgsym_3.4+dfsg-2_i386.deb -------------------------------- new Debian package, version 2.0. size 7509100 bytes: control archive=1504 bytes. 1147 bytes, 12 lines control 2200 bytes, 21 lines md5sums Package: hmmer-dbgsym Source: hmmer Version: 3.4+dfsg-2 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 7694 Depends: hmmer (= 3.4+dfsg-2) Section: debug Priority: optional Description: debug symbols for hmmer Build-Ids: 0dbcc489d560861a9ea6a7b1d385e9d18b52922e 14db4655c7704139c8aebd5b75f2c2f89359cae0 18b0fbbbf5471eed2244a3e279598e1b093eefa4 19ae60e0c16491bc191af4abf1c04b462d1ec493 4708658b3e62cd196cadb2e42ef5dd7d0dad8812 4a21daabacb0787bfbc7f2f78e9a825a1b2249be 7a3fffed1a2f53afd9ba852603bafbffb32f559c 959510496f0907490e6dbc04d689970096bfbd73 a2cc66968abf2be4fa4ebcdfee8c91f9e98f5b4a a83e60b46a469f21ce11a393a6fc1ff22cfe42f3 b663653e5c6c4c219f92a0444d4f374b8e70cd0a c77098410c197383ce5aae27649170772b148f0d d2b82a194732c30fdac174413b03b0f50ac85c27 e0bea6d398b72fa47f031a377521a1d29d9c9366 e1872638c544b4248913889f37c59fdcbed444d5 e3790b121b4a7815f8c134177ee9d1fdece3b556 e9b0dba15afd647937b0ccb3a1e2d518c4540e4f eb4298a964bd53362da8b4112c05962f0f22805d ecda74861ec94fca391bdc5122375e6208d87ea1 f5d33e94e90df20a0104428e5a279a22ccc290e0 drwxr-xr-x root/root 0 2023-09-15 08:08 ./ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/0d/ -rw-r--r-- root/root 272448 2023-09-15 08:08 ./usr/lib/debug/.build-id/0d/bcc489d560861a9ea6a7b1d385e9d18b52922e.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/14/ -rw-r--r-- root/root 617428 2023-09-15 08:08 ./usr/lib/debug/.build-id/14/db4655c7704139c8aebd5b75f2c2f89359cae0.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/18/ -rw-r--r-- root/root 143604 2023-09-15 08:08 ./usr/lib/debug/.build-id/18/b0fbbbf5471eed2244a3e279598e1b093eefa4.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/19/ -rw-r--r-- root/root 232812 2023-09-15 08:08 ./usr/lib/debug/.build-id/19/ae60e0c16491bc191af4abf1c04b462d1ec493.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/47/ -rw-r--r-- root/root 520508 2023-09-15 08:08 ./usr/lib/debug/.build-id/47/08658b3e62cd196cadb2e42ef5dd7d0dad8812.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/4a/ -rw-r--r-- root/root 460384 2023-09-15 08:08 ./usr/lib/debug/.build-id/4a/21daabacb0787bfbc7f2f78e9a825a1b2249be.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/7a/ -rw-r--r-- root/root 399080 2023-09-15 08:08 ./usr/lib/debug/.build-id/7a/3fffed1a2f53afd9ba852603bafbffb32f559c.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/95/ -rw-r--r-- root/root 208900 2023-09-15 08:08 ./usr/lib/debug/.build-id/95/9510496f0907490e6dbc04d689970096bfbd73.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/a2/ -rw-r--r-- root/root 543820 2023-09-15 08:08 ./usr/lib/debug/.build-id/a2/cc66968abf2be4fa4ebcdfee8c91f9e98f5b4a.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 208772 2023-09-15 08:08 ./usr/lib/debug/.build-id/a8/3e60b46a469f21ce11a393a6fc1ff22cfe42f3.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/b6/ -rw-r--r-- root/root 223592 2023-09-15 08:08 ./usr/lib/debug/.build-id/b6/63653e5c6c4c219f92a0444d4f374b8e70cd0a.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/c7/ -rw-r--r-- root/root 697704 2023-09-15 08:08 ./usr/lib/debug/.build-id/c7/7098410c197383ce5aae27649170772b148f0d.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/d2/ -rw-r--r-- root/root 608840 2023-09-15 08:08 ./usr/lib/debug/.build-id/d2/b82a194732c30fdac174413b03b0f50ac85c27.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/e0/ -rw-r--r-- root/root 605488 2023-09-15 08:08 ./usr/lib/debug/.build-id/e0/bea6d398b72fa47f031a377521a1d29d9c9366.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/e1/ -rw-r--r-- root/root 275760 2023-09-15 08:08 ./usr/lib/debug/.build-id/e1/872638c544b4248913889f37c59fdcbed444d5.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/e3/ -rw-r--r-- root/root 192152 2023-09-15 08:08 ./usr/lib/debug/.build-id/e3/790b121b4a7815f8c134177ee9d1fdece3b556.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/e9/ -rw-r--r-- root/root 185372 2023-09-15 08:08 ./usr/lib/debug/.build-id/e9/b0dba15afd647937b0ccb3a1e2d518c4540e4f.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 553240 2023-09-15 08:08 ./usr/lib/debug/.build-id/eb/4298a964bd53362da8b4112c05962f0f22805d.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/ec/ -rw-r--r-- root/root 182952 2023-09-15 08:08 ./usr/lib/debug/.build-id/ec/da74861ec94fca391bdc5122375e6208d87ea1.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.build-id/f5/ -rw-r--r-- root/root 547096 2023-09-15 08:08 ./usr/lib/debug/.build-id/f5/d33e94e90df20a0104428e5a279a22ccc290e0.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 153848 2023-09-15 08:08 ./usr/lib/debug/.dwz/i386-linux-gnu/hmmer.debug drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer-dbgsym -> hmmer hmmer-examples_3.4+dfsg-2_i386.deb ---------------------------------- new Debian package, version 2.0. size 31267836 bytes: control archive=18336 bytes. 863 bytes, 22 lines control 68891 bytes, 749 lines md5sums Package: hmmer-examples Source: hmmer Version: 3.4+dfsg-2 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 32222 Depends: libperl4-corelibs-perl Section: doc Priority: optional Multi-Arch: foreign Homepage: http://hmmer.org/ Description: profile hidden Markov models for protein sequence analysis (examples) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains example files to test the hmmer package. drwxr-xr-x root/root 0 2023-09-15 08:08 ./ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer-examples/ -rw-r--r-- root/root 1165 2023-09-15 08:08 ./usr/share/doc/hmmer-examples/changelog.Debian.gz -rw-r--r-- root/root 5159 2023-09-14 16:33 ./usr/share/doc/hmmer-examples/copyright drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/ -rw-r--r-- root/root 117 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/.travis.yml -rw-r--r-- root/root 3642 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/LICENSE -rw-r--r-- root/root 4611 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/Makefile.gz -rw-r--r-- root/root 4427 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/Makefile.in.gz -rw-r--r-- root/root 1697 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/README.md -rw-r--r-- root/root 14679 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/config.guess.gz -rw-r--r-- root/root 10869 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/config.sub.gz -rw-r--r-- root/root 7049 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/configure.ac.gz -rw-r--r-- root/root 571 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/decoy_config.h -rw-r--r-- root/root 494 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/decoy_config.h.in drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/demotic/ -rw-r--r-- root/root 1434 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/00README.gz -rwxr-xr-x root/root 126 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/blast2profmark -rwxr-xr-x root/root 121 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/blast2tbl -rw-r--r-- root/root 2858 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/demotic_blast.pm.gz -rw-r--r-- root/root 3674 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/demotic_fasta.pm.gz -rw-r--r-- root/root 1732 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/demotic_h2.pm.gz -rw-r--r-- root/root 1960 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/demotic_hmmer.pm.gz -rw-r--r-- root/root 3039 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/demotic_infernal_tab.pm.gz drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/demotic/examples/ -rw-r--r-- root/root 364 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single-psiquery.fa -rw-r--r-- root/root 38302 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.asnt.gz -rw-r--r-- root/root 32076 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.gz -rw-r--r-- root/root 2924 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.phr.gz -rw-r--r-- root/root 1344 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.pin -rw-r--r-- root/root 28195 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.psq.gz -rw-r--r-- root/root 40593 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.pbl.gz -rw-r--r-- root/root 39592 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.sto.gz -rw-r--r-- root/root 737 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.fa -rw-r--r-- root/root 69751 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.fasta.out.gz -rw-r--r-- root/root 35622 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.h2.out.gz -rw-r--r-- root/root 25445 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.hmm.gz -rw-r--r-- root/root 34920 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.hmm2.gz -rw-r--r-- root/root 163840 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.hmmsearch.out.gz -rw-r--r-- root/root 4768 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.ncbi-blastp.out.gz -rw-r--r-- root/root 47168 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.phmmer.out.gz -rw-r--r-- root/root 39454 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.psiblast.out.gz -rw-r--r-- root/root 71200 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.ssearch.out.gz -rw-r--r-- root/root 39766 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.sto.gz -rw-r--r-- root/root 89008 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/examples/example.wu-blastp.out.gz -rwxr-xr-x root/root 127 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/fasta2profmark -rwxr-xr-x root/root 121 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/fasta2tbl -rwxr-xr-x root/root 117 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/h22profmark -rwxr-xr-x root/root 112 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/h22tbl -rwxr-xr-x root/root 126 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/hmmer2profmark -rwxr-xr-x root/root 121 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/hmmer2tbl -rw-r--r-- root/root 4416 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/infernal_tab2gff.pl.gz drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/demotic/regress/ -rw-r--r-- root/root 2432 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/fasta-profmark.out.gz -rw-r--r-- root/root 5344 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/fasta-tbl.out.gz -rw-r--r-- root/root 2363 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/h2-profmark.out.gz -rw-r--r-- root/root 3133 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/h2-tbl.out.gz -rw-r--r-- root/root 11385 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/hmmsearch-profmark.out.gz -rw-r--r-- root/root 13400 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/hmmsearch-tbl.out.gz -rw-r--r-- root/root 975 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/ncbi-blastp-profmark.out -rw-r--r-- root/root 2039 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/ncbi-blastp-tbl.out -rw-r--r-- root/root 2963 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/phmmer-profmark.out.gz -rw-r--r-- root/root 4730 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/phmmer-tbl.out.gz -rw-r--r-- root/root 1655 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/psiblast-profmark.out.gz -rw-r--r-- root/root 2633 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/psiblast-tbl.out.gz -rw-r--r-- root/root 2241 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/ssearch-profmark.out.gz -rw-r--r-- root/root 4963 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/ssearch-tbl.out.gz -rw-r--r-- root/root 6958 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/wu-blastp-profmark.out.gz -rw-r--r-- root/root 10482 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/regress/wu-blastp-tbl.out.gz -rwxr-xr-x root/root 446 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/demotic/test.pl drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/devkit/ -rw-r--r-- root/root 191 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/00README -rw-r--r-- root/root 3493 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/autodoc.gz -rw-r--r-- root/root 4026 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/autodoc.md.gz -rw-r--r-- root/root 2396 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/autodoc.py.gz -rwxr-xr-x root/root 2104 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/c2optlist -rwxr-xr-x root/root 3044 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/cexcerpt -rw-r--r-- root/root 1389 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/cexcerpt.man -rwxr-xr-x root/root 980 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/ctags-fix -rwxr-xr-x root/root 1047 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/man2optlist -rwxr-xr-x root/root 1705 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/rmanprocess.pl -rwxr-xr-x root/root 3067 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/rmanprocess.py -rwxr-xr-x root/root 2014 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/sedition -rwxr-xr-x root/root 2376 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/sedition-pp -rw-r--r-- root/root 8282 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/sqc.gz -rw-r--r-- root/root 3815 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/devkit/techtree.py.gz drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/documentation/ -rw-r--r-- root/root 1691 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/documentation/Makefile.gz -rw-r--r-- root/root 1655 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/Makefile.in.gz -rw-r--r-- root/root 16159 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/codestyle.md.gz -rw-r--r-- root/root 22955 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/codestyle.tex.gz -rw-r--r-- root/root 357 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/copyright.tex -rw-r--r-- root/root 1812 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/doctricks.tex drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/documentation/figures/ -rw-r--r-- root/root 1287708 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/easel_techtree.ai.gz -rw-r--r-- root/root 1247213 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/easel_techtree.pdf.gz -rw-r--r-- root/root 177484 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/easel_techtree.png -rw-r--r-- root/root 30764 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/evd_basic.pdf.gz -rw-r--r-- root/root 31112 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/evd_location.pdf.gz -rw-r--r-- root/root 30515 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/evd_scale.pdf.gz -rw-r--r-- root/root 9239 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/gev_density.pdf.gz -rw-r--r-- root/root 14185 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/gev_logdensity.pdf.gz -rw-r--r-- root/root 173882 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rna_elements.ai.gz -rw-r--r-- root/root 227439 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rna_elements.eps.gz -rw-r--r-- root/root 9493 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rna_elements.pdf.gz -rw-r--r-- root/root 77312 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-bsu-alignment.ai.gz -rw-r--r-- root/root 502802 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-bsu-alignment.eps.gz -rw-r--r-- root/root 18660 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-bsu-alignment.pdf.gz -rw-r--r-- root/root 187895 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-ecoli.ai.gz -rw-r--r-- root/root 612530 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-ecoli.eps.gz -rw-r--r-- root/root 17446 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-ecoli.pdf.gz -rw-r--r-- root/root 1887 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/format_a2m.tex.gz -rw-r--r-- root/root 3412 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/format_ncbi.tex.gz -rw-r--r-- root/root 3767 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/format_stockholm.tex.gz -rw-r--r-- root/root 3663 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/format_wuss.tex.gz -rw-r--r-- root/root 277 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/install.tex -rw-r--r-- root/root 67 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/installation.tex -rw-r--r-- root/root 5501 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/intro.tex.gz -rw-r--r-- root/root 2811 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/macros.tex -rw-r--r-- root/root 3697 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/main.tex.gz -rw-r--r-- root/root 3853 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/statistics.tex -rw-r--r-- root/root 556 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/titlepage.tex -rw-r--r-- root/root 867 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/documentation/typography.tex -rw-r--r-- root/root 29012 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/easel.c.gz -rw-r--r-- root/root 7441 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/easel.h.gz -rw-r--r-- root/root 7087 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/easel.tex.gz -rw-r--r-- root/root 46820 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/easel_utest.gz -rw-r--r-- root/root 3962 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_alloc.c.gz -rw-r--r-- root/root 204 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_alloc.h -rw-r--r-- root/root 2842 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_alloc.md.gz -rw-r--r-- root/root 39428 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_alloc_utest.gz -rw-r--r-- root/root 20234 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_alphabet.c.gz -rw-r--r-- root/root 2022 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_alphabet.h.gz -rw-r--r-- root/root 8226 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_alphabet.tex.gz -rw-r--r-- root/root 47262 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_alphabet_utest.gz -rw-r--r-- root/root 1109 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_arr2.c -rw-r--r-- root/root 204 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_arr2.h -rw-r--r-- root/root 1463 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_arr3.c -rw-r--r-- root/root 226 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_arr3.h -rw-r--r-- root/root 2142 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_avx.c.gz -rw-r--r-- root/root 1648 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_avx.h.gz -rw-r--r-- root/root 1646 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_avx512.c.gz -rw-r--r-- root/root 1767 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_avx512.h.gz -rw-r--r-- root/root 3891 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_avx512_utest.gz -rw-r--r-- root/root 3878 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_avx_utest.gz -rw-r--r-- root/root 1677 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_bitfield.c.gz -rw-r--r-- root/root 867 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_bitfield.h -rw-r--r-- root/root 46535 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_bitfield_utest.gz -rw-r--r-- root/root 25402 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_buffer.c.gz -rw-r--r-- root/root 1574 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_buffer.h.gz -rw-r--r-- root/root 6748 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_buffer.tex.gz -rw-r--r-- root/root 81207 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_buffer_utest.gz -rw-r--r-- root/root 3973 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_cluster.c.gz -rw-r--r-- root/root 434 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_cluster.h -rw-r--r-- root/root 2197 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_cluster.tex -rw-r--r-- root/root 32606 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_cluster_utest.gz -rw-r--r-- root/root 1172 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_composition.c.gz -rw-r--r-- root/root 205 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_composition.h -rw-r--r-- root/root 2452 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_config.h -rw-r--r-- root/root 3011 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_config.h.in -rw-r--r-- root/root 3701 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_cpu.c.gz -rw-r--r-- root/root 257 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_cpu.h -rw-r--r-- root/root 4404 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_cpu_utest.gz -rw-r--r-- root/root 3010 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dirichlet.c.gz -rw-r--r-- root/root 934 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dirichlet.h -rw-r--r-- root/root 2343 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dirichlet.tex -rw-r--r-- root/root 51678 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_dirichlet_utest.gz -rw-r--r-- root/root 12592 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_distance.c.gz -rw-r--r-- root/root 2939 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_distance.h -rw-r--r-- root/root 2274 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_distance.tex.gz -rw-r--r-- root/root 235179 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_distance_utest.gz -rw-r--r-- root/root 12742 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dmatrix.c.gz -rw-r--r-- root/root 3860 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dmatrix.h -rw-r--r-- root/root 3343 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dmatrix.tex.gz -rw-r--r-- root/root 27201 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_dmatrix_utest.gz -rw-r--r-- root/root 21097 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dsqdata.c.gz -rw-r--r-- root/root 2515 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dsqdata.h.gz -rw-r--r-- root/root 5359 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dsqdata.md.gz -rw-r--r-- root/root 5197 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_dsqdata.tex.gz -rw-r--r-- root/root 377536 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_dsqdata_utest.gz -rw-r--r-- root/root 5412 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_exponential.c.gz -rw-r--r-- root/root 1570 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_exponential.h -rw-r--r-- root/root 1115 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_exponential.tex -rw-r--r-- root/root 39087 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_exponential_utest.gz -rw-r--r-- root/root 6547 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_fileparser.c.gz -rw-r--r-- root/root 2059 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_fileparser.h -rw-r--r-- root/root 1625 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_fileparser.tex.gz -rw-r--r-- root/root 20686 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_fileparser_utest.gz -rw-r--r-- root/root 8705 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gamma.c.gz -rw-r--r-- root/root 1555 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gamma.h -rw-r--r-- root/root 2353 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gamma.md.gz -rw-r--r-- root/root 1711 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gamma.tex -rw-r--r-- root/root 51316 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_gamma_utest.gz -rw-r--r-- root/root 11949 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gencode.c.gz -rw-r--r-- root/root 1727 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gencode.h.gz -rw-r--r-- root/root 133267 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_gencode_utest.gz -rw-r--r-- root/root 21653 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_getopts.c.gz -rw-r--r-- root/root 1903 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_getopts.h.gz -rw-r--r-- root/root 10835 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_getopts.md.gz -rw-r--r-- root/root 38583 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_getopts_utest.gz -rw-r--r-- root/root 7368 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gev.c.gz -rw-r--r-- root/root 1612 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gev.h -rw-r--r-- root/root 2765 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gev.tex.gz -rw-r--r-- root/root 3184 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_graph.c.gz -rw-r--r-- root/root 200 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_graph.h -rw-r--r-- root/root 49500 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_graph_utest.gz -rw-r--r-- root/root 10580 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gumbel.c.gz -rw-r--r-- root/root 1889 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gumbel.h -rw-r--r-- root/root 7312 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_gumbel.tex.gz -rw-r--r-- root/root 65462 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_gumbel_utest.gz -rw-r--r-- root/root 2991 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_heap.c.gz -rw-r--r-- root/root 1015 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_heap.h -rw-r--r-- root/root 39875 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_heap_utest.gz -rw-r--r-- root/root 17471 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_histogram.c.gz -rw-r--r-- root/root 1844 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_histogram.h.gz -rw-r--r-- root/root 4799 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_histogram.tex.gz -rw-r--r-- root/root 80161 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_histogram_utest.gz -rw-r--r-- root/root 5850 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_hmm.c.gz -rw-r--r-- root/root 2341 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_hmm.h -rw-r--r-- root/root 59100 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_hmm_utest.gz -rw-r--r-- root/root 10384 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_huffman.c.gz -rw-r--r-- root/root 1931 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_huffman.h -rw-r--r-- root/root 59963 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_huffman_utest.gz -rw-r--r-- root/root 9849 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_hyperexp.c.gz -rw-r--r-- root/root 2472 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_hyperexp.h -rw-r--r-- root/root 1101 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_hyperexp.tex -rw-r--r-- root/root 73438 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_hyperexp_utest.gz -rw-r--r-- root/root 12938 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_iset.c.gz -rw-r--r-- root/root 2097 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_iset.h -rw-r--r-- root/root 221146 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_iset_utest.gz -rw-r--r-- root/root 14553 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_json.c.gz -rw-r--r-- root/root 2008 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_json.h.gz -rw-r--r-- root/root 78557 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_json_utest.gz -rw-r--r-- root/root 7462 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_keyhash.c.gz -rw-r--r-- root/root 2755 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_keyhash.h -rw-r--r-- root/root 3621 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_keyhash.tex -rw-r--r-- root/root 52541 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_keyhash_utest.gz -rw-r--r-- root/root 2638 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_lognormal.c.gz -rw-r--r-- root/root 634 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_lognormal.h -rw-r--r-- root/root 916 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_lognormal.md -rw-r--r-- root/root 43510 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_lognormal_utest.gz -rw-r--r-- root/root 3454 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_matrixops.c.gz -rw-r--r-- root/root 2831 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_matrixops.h -rw-r--r-- root/root 51472 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_matrixops_utest.gz -rw-r--r-- root/root 11663 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mem.c.gz -rw-r--r-- root/root 1702 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mem.h -rw-r--r-- root/root 3063 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mem.md -rw-r--r-- root/root 57644 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_mem_utest.gz -rw-r--r-- root/root 10314 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_minimizer.c.gz -rw-r--r-- root/root 2773 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_minimizer.h -rw-r--r-- root/root 241 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_minimizer.tex -rw-r--r-- root/root 52928 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_minimizer_utest.gz -rw-r--r-- root/root 8871 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mixdchlet.c.gz -rw-r--r-- root/root 1883 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mixdchlet.h -rw-r--r-- root/root 3438 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mixdchlet.tex -rw-r--r-- root/root 93957 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_mixdchlet_utest.gz -rw-r--r-- root/root 6308 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mixgev.c.gz -rw-r--r-- root/root 2090 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mixgev.h -rw-r--r-- root/root 10488 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mpi.c.gz -rw-r--r-- root/root 2784 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mpi.h -rw-r--r-- root/root 770 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_mpi.tex -rw-r--r-- root/root 30152 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa.c.gz -rw-r--r-- root/root 2907 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa.h.gz -rw-r--r-- root/root 4446 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa.tex.gz drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/a2m/ -rw-r--r-- root/root 682 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/a2m/a2m.good.1 -rw-r--r-- root/root 409 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/a2m/a2m.good.2 drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/afa/ -rw-r--r-- root/root 717 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/afa/afa.good.1 -rw-r--r-- root/root 410 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/afa/afa.good.2 -rw-r--r-- root/root 909 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/afa/afa.good.3 drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/clustal/ -rw-r--r-- root/root 1125 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/clustal/clustal.good.1 -rw-r--r-- root/root 689 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/clustal/clustal.good.2 drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/ -rw-r--r-- root/root 139 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.ambig.1 -rw-r--r-- root/root 76 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.1 -rw-r--r-- root/root 116 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.10 -rw-r--r-- root/root 141 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.11 -rw-r--r-- root/root 77 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.2 -rw-r--r-- root/root 73 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.3 -rw-r--r-- root/root 68 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.4 -rw-r--r-- root/root 9 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.5 -rw-r--r-- root/root 39 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.6 -rw-r--r-- root/root 74 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.7 -rw-r--r-- root/root 73 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.8 -rw-r--r-- root/root 72 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.bad.9 -rw-r--r-- root/root 296 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.good.1 -rw-r--r-- root/root 441 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.good.2 -rw-r--r-- root/root 1575 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylip/phylip.good.3 drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylips/ -rw-r--r-- root/root 295 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylips/phylips.good.1 -rw-r--r-- root/root 1205 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/phylips/phylips.good.2 drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/psiblast/ -rw-r--r-- root/root 818 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/psiblast/psiblast.good.1 -rw-r--r-- root/root 446 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/psiblast/psiblast.good.2 drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/ -rw-r--r-- root/root 1472 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/00MANIFEST -rw-r--r-- root/root 44 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.1 -rw-r--r-- root/root 328 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.10 -rw-r--r-- root/root 327 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.11 -rw-r--r-- root/root 327 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.12 -rw-r--r-- root/root 327 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.13 -rw-r--r-- root/root 274 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.14 -rw-r--r-- root/root 241 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.2 -rw-r--r-- root/root 163 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.3 -rw-r--r-- root/root 169 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.4 -rw-r--r-- root/root 196 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.5 -rw-r--r-- root/root 190 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.6 -rw-r--r-- root/root 298 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.7 -rw-r--r-- root/root 190 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.8 -rw-r--r-- root/root 326 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.bad.9 -rw-r--r-- root/root 130 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.good.1 -rw-r--r-- root/root 974 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.good.2 -rw-r--r-- root/root 420 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.good.3 -rw-r--r-- root/root 557 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/selex/selex.good.4 drwxr-xr-x root/root 0 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/ -rw-r--r-- root/root 25 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.bad.1 -rw-r--r-- root/root 102 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.bad.2 -rw-r--r-- root/root 84 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.bad.3 -rw-r--r-- root/root 75 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.bad.4 -rw-r--r-- root/root 30 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.bad.5 -rw-r--r-- root/root 81 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.bad.6 -rw-r--r-- root/root 86 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.bad.7 -rw-r--r-- root/root 55 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.bad.8 -rw-r--r-- root/root 3271 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msa_testfiles/stockholm/stockholm.good.1 -rw-r--r-- root/root 265162 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msa_utest.gz -rw-r--r-- root/root 4584 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msacluster.c.gz -rw-r--r-- root/root 318 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msacluster.h -rw-r--r-- root/root 954 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msacluster.tex -rw-r--r-- root/root 206485 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msacluster_utest.gz -rw-r--r-- root/root 16318 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile.c.gz -rw-r--r-- root/root 2419 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile.h.gz -rw-r--r-- root/root 2757 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile.md.gz -rw-r--r-- root/root 15456 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile2.c.gz -rw-r--r-- root/root 3333 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile2.h -rw-r--r-- root/root 220416 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile2_utest.gz -rw-r--r-- root/root 11516 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_a2m.c.gz -rw-r--r-- root/root 539 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_a2m.h -rw-r--r-- root/root 219697 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile_a2m_utest.gz -rw-r--r-- root/root 7677 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_afa.c.gz -rw-r--r-- root/root 533 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_afa.h -rw-r--r-- root/root 211543 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile_afa_utest.gz -rw-r--r-- root/root 11497 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_clustal.c.gz -rw-r--r-- root/root 573 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_clustal.h -rw-r--r-- root/root 221043 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile_clustal_utest.gz -rw-r--r-- root/root 17617 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_phylip.c.gz -rw-r--r-- root/root 686 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_phylip.h -rw-r--r-- root/root 256206 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile_phylip_utest.gz -rw-r--r-- root/root 8634 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_psiblast.c.gz -rw-r--r-- root/root 559 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_psiblast.h -rw-r--r-- root/root 217057 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile_psiblast_utest.gz -rw-r--r-- root/root 11303 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_selex.c.gz -rw-r--r-- root/root 542 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_selex.h -rw-r--r-- root/root 229251 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile_selex_utest.gz -rw-r--r-- root/root 18564 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_stockholm.c.gz -rw-r--r-- root/root 573 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msafile_stockholm.h -rw-r--r-- root/root 230946 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile_stockholm_utest.gz -rw-r--r-- root/root 267108 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msafile_utest.gz -rw-r--r-- root/root 5474 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msashuffle.c.gz -rw-r--r-- root/root 1115 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msashuffle.h -rw-r--r-- root/root 18478 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msaweight.c.gz -rw-r--r-- root/root 3609 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msaweight.h -rw-r--r-- root/root 2375 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msaweight.md.gz -rw-r--r-- root/root 1809 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_msaweight.tex -rw-r--r-- root/root 249241 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_msaweight_utest.gz -rw-r--r-- root/root 7421 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_neon.c.gz -rw-r--r-- root/root 2918 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_neon.h.gz -rw-r--r-- root/root 2563 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_neon_utest.gz -rw-r--r-- root/root 2800 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_normal.c.gz -rw-r--r-- root/root 672 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_normal.h -rw-r--r-- root/root 694 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_normal.tex -rw-r--r-- root/root 13818 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_normal_utest.gz -rw-r--r-- root/root 2154 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_paml.c.gz -rw-r--r-- root/root 504 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_paml.h -rw-r--r-- root/root 132 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_paml.tex -rw-r--r-- root/root 2450 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_quicksort.c.gz -rw-r--r-- root/root 270 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_quicksort.h -rw-r--r-- root/root 37899 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_quicksort_utest.gz -rw-r--r-- root/root 8949 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_rand64.c.gz -rw-r--r-- root/root 1167 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_rand64.h -rw-r--r-- root/root 52419 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_rand64_utest.gz -rw-r--r-- root/root 14663 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_random.c.gz -rw-r--r-- root/root 2709 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_random.h -rw-r--r-- root/root 2565 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_random.tex.gz -rw-r--r-- root/root 57981 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_random_utest.gz -rw-r--r-- root/root 15105 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_randomseq.c.gz -rw-r--r-- root/root 3366 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_randomseq.h -rw-r--r-- root/root 3994 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_randomseq.tex -rw-r--r-- root/root 90877 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_randomseq_utest.gz -rw-r--r-- root/root 7216 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_ratematrix.c.gz -rw-r--r-- root/root 1145 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_ratematrix.h -rw-r--r-- root/root 111 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_ratematrix.tex -rw-r--r-- root/root 35768 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_ratematrix_utest.gz -rw-r--r-- root/root 8620 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_recorder.c.gz -rw-r--r-- root/root 3206 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_recorder.h -rw-r--r-- root/root 52375 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_recorder_utest.gz -rw-r--r-- root/root 5474 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_red_black.c.gz -rw-r--r-- root/root 3357 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_red_black.h -rw-r--r-- root/root 19124 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_red_black_utest.gz -rw-r--r-- root/root 16822 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_regexp.c.gz -rw-r--r-- root/root 2952 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_regexp.h -rw-r--r-- root/root 2592 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_regexp.md.gz -rw-r--r-- root/root 5218 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_regexp.tex.gz -rw-r--r-- root/root 59807 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_regexp_utest.gz -rw-r--r-- root/root 3700 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_rootfinder.c.gz -rw-r--r-- root/root 1416 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_rootfinder.h -rw-r--r-- root/root 1900 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_rootfinder.tex -rw-r--r-- root/root 14993 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_rootfinder_utest.gz -rw-r--r-- root/root 25452 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_scorematrix.c.gz -rw-r--r-- root/root 3698 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_scorematrix.h -rw-r--r-- root/root 3033 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_scorematrix.tex -rw-r--r-- root/root 85287 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_scorematrix_utest.gz -rw-r--r-- root/root 20270 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sq.c.gz -rw-r--r-- root/root 3877 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sq.h.gz -rw-r--r-- root/root 5703 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sq.tex.gz -rw-r--r-- root/root 201751 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_sq_utest.gz -rw-r--r-- root/root 20138 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sqio.c.gz -rw-r--r-- root/root 2144 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sqio.h.gz -rw-r--r-- root/root 4496 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sqio.tex.gz -rw-r--r-- root/root 28776 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sqio_ascii.c.gz -rw-r--r-- root/root 3851 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sqio_ascii.h -rw-r--r-- root/root 20797 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sqio_ncbi.c.gz -rw-r--r-- root/root 1332 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sqio_ncbi.h.gz -rw-r--r-- root/root 435941 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_sqio_utest.gz -rw-r--r-- root/root 8061 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sse.c.gz -rw-r--r-- root/root 2878 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sse.h.gz -rw-r--r-- root/root 1493 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_sse.tex -rw-r--r-- root/root 51890 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_sse_utest.gz -rw-r--r-- root/root 19832 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_ssi.c.gz -rw-r--r-- root/root 1940 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_ssi.h.gz -rw-r--r-- root/root 7092 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_ssi.tex.gz -rw-r--r-- root/root 409473 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_ssi_utest.gz -rw-r--r-- root/root 7756 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stack.c.gz -rw-r--r-- root/root 2290 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stack.h -rw-r--r-- root/root 1495 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stack.tex.gz -rw-r--r-- root/root 51522 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_stack_utest.gz -rw-r--r-- root/root 14373 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stats.c.gz -rw-r--r-- root/root 1551 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stats.h.gz -rw-r--r-- root/root 1706 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stats.tex -rw-r--r-- root/root 69495 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_stats_utest.gz -rw-r--r-- root/root 4208 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stopwatch.c.gz -rw-r--r-- root/root 1702 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stopwatch.h -rw-r--r-- root/root 1853 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stopwatch.tex.gz -rw-r--r-- root/root 5199 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stretchexp.c.gz -rw-r--r-- root/root 1593 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stretchexp.h -rw-r--r-- root/root 1494 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_stretchexp.tex -rw-r--r-- root/root 76328 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_stretchexp_utest.gz -rw-r--r-- root/root 3586 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_subcmd.c -rw-r--r-- root/root 632 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_subcmd.h -rw-r--r-- root/root 2325 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_swat.c.gz -rw-r--r-- root/root 77 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_swat.tex -rw-r--r-- root/root 4401 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_threads.c.gz -rw-r--r-- root/root 1588 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_threads.h -rw-r--r-- root/root 18023 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_tree.c.gz -rw-r--r-- root/root 1851 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_tree.h.gz -rw-r--r-- root/root 1283 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_tree.tex -rw-r--r-- root/root 70716 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_tree_utest.gz -rw-r--r-- root/root 7262 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_varint.c.gz -rw-r--r-- root/root 805 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_varint.h -rw-r--r-- root/root 4116 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_varint.md.gz -rw-r--r-- root/root 50772 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_varint_utest.gz -rw-r--r-- root/root 11186 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_vectorops.c.gz -rw-r--r-- root/root 1168 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_vectorops.h.gz -rw-r--r-- root/root 1861 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_vectorops.md.gz -rw-r--r-- root/root 63892 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_vectorops_utest.gz -rw-r--r-- root/root 6218 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_vmx.c.gz -rw-r--r-- root/root 1468 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_vmx.h.gz -rw-r--r-- root/root 2562 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_vmx_utest.gz -rw-r--r-- root/root 5795 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_weibull.c.gz -rw-r--r-- root/root 1554 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_weibull.h -rw-r--r-- root/root 1458 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_weibull.tex -rw-r--r-- root/root 71730 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_weibull_utest.gz -rw-r--r-- root/root 3930 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_workqueue.c.gz -rw-r--r-- root/root 3762 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_workqueue.h -rw-r--r-- root/root 7247 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_wuss.c.gz -rw-r--r-- root/root 561 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_wuss.h -rw-r--r-- root/root 1172 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/esl_wuss.tex -rw-r--r-- root/root 33668 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/esl_wuss_utest.gz drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/formats/ -rw-r--r-- root/root 2122 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/BLOSUM62 -rw-r--r-- root/root 2015 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/embl.gz -rw-r--r-- root/root 712 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/fasta -rw-r--r-- root/root 718 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/fasta.2 -rw-r--r-- root/root 46 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/fasta.bad.1 -rw-r--r-- root/root 14 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/fasta.bad.2 -rw-r--r-- root/root 23 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/fasta.bad.3 -rw-r--r-- root/root 60 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/fasta.odd.1 -rw-r--r-- root/root 2490 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/genbank -rw-r--r-- root/root 2249 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/genbank.2 -rw-r--r-- root/root 2491 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/genbank.bad.1 -rw-r--r-- root/root 44 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/stockholm.1 -rw-r--r-- root/root 4342 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/uniprot.gz -rw-r--r-- root/root 3019 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/formats/wag.dat -rw-r--r-- root/root 3447 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/install-sh.gz -rw-r--r-- root/root 1523 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/interface_gsl.c -rw-r--r-- root/root 538 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/interface_gsl.h -rw-r--r-- root/root 2558 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/interface_lapack.c -rw-r--r-- root/root 784 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/interface_lapack.h -rw-r--r-- root/root 3808662 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/libeasel.a.gz drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/m4/ -rw-r--r-- root/root 3330 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/ax_check_compile_flag.m4 -rw-r--r-- root/root 3418 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/ax_check_gnu_make.m4 -rw-r--r-- root/root 3604 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/ax_compiler_vendor.m4 -rw-r--r-- root/root 1774 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/ax_gcc_func_attribute.m4.gz -rw-r--r-- root/root 2405 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/ax_prog_cc_mpi.m4.gz -rw-r--r-- root/root 7127 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/ax_pthread.m4.gz -rw-r--r-- root/root 2424 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/esl_avx.m4 -rw-r--r-- root/root 3145 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/esl_avx512.m4 -rw-r--r-- root/root 1093 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/esl_cuda.m4 -rw-r--r-- root/root 3527 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/esl_neon.m4 -rw-r--r-- root/root 1737 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/esl_pic_flags.m4.gz -rw-r--r-- root/root 2472 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/esl_sse.m4 -rw-r--r-- root/root 2571 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/esl_sse4.m4 -rw-r--r-- root/root 2011 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/m4/esl_vmx.m4 -rwxr-xr-x root/root 792 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/makeTAGS.sh drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/ -rw-r--r-- root/root 3435 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/Makefile -rw-r--r-- root/root 3264 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/Makefile.in -rw-r--r-- root/root 1972 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/cmd_alistat.c.gz -rw-r--r-- root/root 3342 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/cmd_downsample.c.gz -rw-r--r-- root/root 2652 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/cmd_filter.c.gz -rw-r--r-- root/root 3502 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/cmd_filter.md.gz -rw-r--r-- root/root 2256 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/cmd_index.c.gz -rw-r--r-- root/root 3287 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/easel-downsample.man.in -rw-r--r-- root/root 1672 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/easel.c.gz -rw-r--r-- root/root 543790 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/easel.gz -rw-r--r-- root/root 4000 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-afetch.c.gz -rw-r--r-- root/root 277834 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-afetch.gz -rw-r--r-- root/root 1224 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-afetch.itest.pl.gz -rw-r--r-- root/root 2391 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-afetch.man -rw-r--r-- root/root 2325 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-afetch.man.in -rw-r--r-- root/root 33624 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimanip.c.gz -rw-r--r-- root/root 510721 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimanip.gz -rw-r--r-- root/root 2073 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimanip.itest.pl.gz -rw-r--r-- root/root 2914 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimanip.man.gz -rw-r--r-- root/root 2865 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimanip.man.in.gz -rw-r--r-- root/root 7271 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimap.c.gz -rw-r--r-- root/root 234929 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimap.gz -rw-r--r-- root/root 1124 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimap.itest.pl.gz -rw-r--r-- root/root 1837 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimap.man.gz -rw-r--r-- root/root 1782 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimap.man.in.gz -rw-r--r-- root/root 14370 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimask.c.gz -rw-r--r-- root/root 336904 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimask.gz -rw-r--r-- root/root 2306 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimask.itest.pl.gz -rw-r--r-- root/root 4778 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimask.man.gz -rw-r--r-- root/root 4727 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimask.man.in.gz -rw-r--r-- root/root 18780 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimerge.c.gz -rw-r--r-- root/root 341166 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimerge.gz -rw-r--r-- root/root 1669 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimerge.itest.pl.gz -rw-r--r-- root/root 2058 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimerge.man.gz -rw-r--r-- root/root 2008 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alimerge.man.in.gz -rw-r--r-- root/root 3729 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alipid.c -rw-r--r-- root/root 236961 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alipid.gz -rw-r--r-- root/root 3235 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alipid.man -rw-r--r-- root/root 3169 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alipid.man.in -rw-r--r-- root/root 3575 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alirev.c -rw-r--r-- root/root 263363 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alirev.gz -rw-r--r-- root/root 3388 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alirev.man -rw-r--r-- root/root 3322 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alirev.man.in -rw-r--r-- root/root 10560 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alistat.c.gz -rw-r--r-- root/root 298471 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alistat.gz -rw-r--r-- root/root 1701 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alistat.itest.pl.gz -rw-r--r-- root/root 2097 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alistat.man.gz -rw-r--r-- root/root 2046 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-alistat.man.in.gz -rw-r--r-- root/root 6347 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compalign.c.gz -rw-r--r-- root/root 231105 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compalign.gz -rw-r--r-- root/root 1175 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compalign.itest.pl.gz -rw-r--r-- root/root 1743 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compalign.man.gz -rw-r--r-- root/root 1689 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compalign.man.in.gz -rw-r--r-- root/root 3877 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compstruct.c.gz -rw-r--r-- root/root 203828 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compstruct.gz -rw-r--r-- root/root 3413 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compstruct.man -rw-r--r-- root/root 3347 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-compstruct.man.in -rw-r--r-- root/root 7540 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-construct.c.gz -rw-r--r-- root/root 250045 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-construct.gz -rw-r--r-- root/root 1205 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-construct.itest.pl.gz -rw-r--r-- root/root 1792 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-construct.man.gz -rw-r--r-- root/root 1734 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-construct.man.in.gz -rw-r--r-- root/root 3068 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-histplot.c.gz -rw-r--r-- root/root 91434 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-histplot.gz -rw-r--r-- root/root 1355 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-histplot.man -rw-r--r-- root/root 1289 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-histplot.man.in -rw-r--r-- root/root 3213 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mask.c.gz -rw-r--r-- root/root 392179 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mask.gz -rw-r--r-- root/root 728 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mask.itest.pl.gz -rw-r--r-- root/root 3457 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mask.man -rw-r--r-- root/root 3380 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mask.man.in -rw-r--r-- root/root 3164 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mixdchlet.c.gz -rw-r--r-- root/root 98327 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mixdchlet.gz -rw-r--r-- root/root 3904 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mixdchlet.man -rw-r--r-- root/root 3838 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-mixdchlet.man.in -rw-r--r-- root/root 11089 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-reformat.c.gz -rw-r--r-- root/root 458712 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-reformat.gz -rw-r--r-- root/root 2411 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-reformat.man.gz -rw-r--r-- root/root 2359 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-reformat.man.in.gz -rw-r--r-- root/root 3584 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-selectn.c -rw-r--r-- root/root 38892 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-selectn.gz -rw-r--r-- root/root 1352 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-selectn.man -rw-r--r-- root/root 1286 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-selectn.man.in -rw-r--r-- root/root 2472 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqrange.c.gz -rw-r--r-- root/root 383448 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqrange.gz -rw-r--r-- root/root 960 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqrange.itest.pl.gz -rw-r--r-- root/root 1789 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqrange.man -rw-r--r-- root/root 1723 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqrange.man.in -rw-r--r-- root/root 3085 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqstat.c.gz -rw-r--r-- root/root 388889 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqstat.gz -rw-r--r-- root/root 1877 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqstat.man -rw-r--r-- root/root 1811 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-seqstat.man.in -rw-r--r-- root/root 5885 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-sfetch.c.gz -rw-r--r-- root/root 441521 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-sfetch.gz -rw-r--r-- root/root 2282 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-sfetch.man.gz -rw-r--r-- root/root 2232 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-sfetch.man.in.gz -rw-r--r-- root/root 4432 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-shuffle.c.gz -rw-r--r-- root/root 450787 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-shuffle.gz -rwxr-xr-x root/root 3053 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-shuffle.itest.py -rw-r--r-- root/root 1899 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-shuffle.man.gz -rw-r--r-- root/root 1849 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-shuffle.man.in.gz -rw-r--r-- root/root 66560 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-ssdraw.c.gz -rw-r--r-- root/root 418115 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-ssdraw.gz -rw-r--r-- root/root 3682 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-ssdraw.itest.pl.gz -rw-r--r-- root/root 8408 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-ssdraw.man.gz -rw-r--r-- root/root 8361 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-ssdraw.man.in.gz -rw-r--r-- root/root 2923 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-translate.c.gz -rw-r--r-- root/root 432171 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-translate.gz -rw-r--r-- root/root 2190 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-translate.itest.pl.gz -rw-r--r-- root/root 3125 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-translate.man.gz -rw-r--r-- root/root 3080 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-translate.man.in.gz -rw-r--r-- root/root 1839 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-weight.c.gz -rw-r--r-- root/root 293413 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-weight.gz -rw-r--r-- root/root 1905 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-weight.man -rw-r--r-- root/root 1839 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/miniapps/esl-weight.man.in drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/release-notes/ -rw-r--r-- root/root 2375 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/release-notes/RELEASE-0.46.md.gz -rw-r--r-- root/root 994 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/release-notes/RELEASE-0.47.md -rw-r--r-- root/root 330 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/release-notes/RELEASE-0.48.md -rw-r--r-- root/root 2596 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/release-notes/RELEASE-0.49.md drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/testsuite/ -rw-r--r-- root/root 2468 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/easel/testsuite/Makefile -rw-r--r-- root/root 2385 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/Makefile.in -rw-r--r-- root/root 1682 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/coverage_report.pl.gz -rwxr-xr-x root/root 671 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/e2.sh -rw-r--r-- root/root 1294 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/i1-degen-residues.pl.gz -rw-r--r-- root/root 2697 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/i2-ncbi-indices.pl.gz -rwxr-xr-x root/root 2574 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/i3-blank-gf.pl -rwxr-xr-x root/root 1989 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/i4-alimanip-sindi.sh -rwxr-xr-x root/root 2935 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/parse_test_results.py -rw-r--r-- root/root 1705 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/testsuite.sqc.gz -rw-r--r-- root/root 1109 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/trna-5.stk -rw-r--r-- root/root 1363 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/trna-ssdraw.ps.gz -rwxr-xr-x root/root 3294 2023-08-13 08:10 ./usr/share/doc/hmmer/examples/easel/testsuite/valgrind_report.pl drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/ -rw-r--r-- root/root 298260 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/build_utest.gz -rw-r--r-- root/root 146464 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/generic_fwdback_chk_utest.gz -rw-r--r-- root/root 144839 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/generic_fwdback_utest.gz -rw-r--r-- root/root 104441 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/generic_msv_utest.gz -rw-r--r-- root/root 136168 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/generic_stotrace_utest.gz -rw-r--r-- root/root 304406 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/generic_viterbi_utest.gz -rw-r--r-- root/root 24323 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/hmmd_search_status_utest.gz -rw-r--r-- root/root 41340 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/hmmer_utest.gz -rw-r--r-- root/root 503028 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/hmmpgmd2msa_utest.gz -rwxr-xr-x root/root 2286 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/hmmpress.itest.pl drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/ -rw-r--r-- root/root 143660 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/decoding_utest.gz -rw-r--r-- root/root 139919 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/fwdback_utest.gz -rw-r--r-- root/root 320138 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/io_utest.gz -rw-r--r-- root/root 176407 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/msvfilter_utest.gz -rw-r--r-- root/root 151140 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/null2_utest.gz -rw-r--r-- root/root 204723 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/optacc_utest.gz -rw-r--r-- root/root 172463 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/stotrace_utest.gz -rw-r--r-- root/root 129780 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/impl/vitfilter_utest.gz -rw-r--r-- root/root 169970 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/itest_brute.gz -rw-r--r-- root/root 40381 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/logsum_utest.gz -rw-r--r-- root/root 62102 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/modelconfig_utest.gz -rw-r--r-- root/root 126434 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_alidisplay_utest.gz -rw-r--r-- root/root 74061 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_bg_utest.gz -rw-r--r-- root/root 86089 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_domain_utest.gz -rw-r--r-- root/root 98104 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_gmx_utest.gz -rw-r--r-- root/root 90009 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_gmxchk_utest.gz -rw-r--r-- root/root 102686 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_hit_utest.gz -rw-r--r-- root/root 87787 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_hmm_utest.gz -rw-r--r-- root/root 28307 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_hmmd_search_stats_utest.gz -rw-r--r-- root/root 267419 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_hmmfile_utest.gz -rw-r--r-- root/root 80726 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_profile_utest.gz -rw-r--r-- root/root 81179 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_scoredata_utest.gz -rw-r--r-- root/root 185743 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_tophits_utest.gz -rw-r--r-- root/root 275071 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/p7_trace_utest.gz -rw-r--r-- root/root 203210 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/src/seqmodel_utest.gz drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/testsuite/ -rw-r--r-- root/root 165 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.afa -rw-r--r-- root/root 132 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.fa -rw-r--r-- root/root 176 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.phr -rw-r--r-- root/root 112 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.pin -rw-r--r-- root/root 48 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.pog -rw-r--r-- root/root 80 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.psd -rw-r--r-- root/root 64 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.psi -rw-r--r-- root/root 104 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.psq -rw-r--r-- root/root 180 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa-alitest.sto -rw-r--r-- root/root 2319 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa.hmm.gz -rw-r--r-- root/root 353 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/20aa.sto -rw-r--r-- root/root 5477 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/2OG-FeII_Oxy_3-nt.hmm.gz -rw-r--r-- root/root 11353 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/2OG-FeII_Oxy_3.hmm.gz -rw-r--r-- root/root 2970 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box-alitest.fa.gz -rw-r--r-- root/root 45 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box-alitest.nhr -rw-r--r-- root/root 96 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box-alitest.nin -rw-r--r-- root/root 36 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box-alitest.nog -rw-r--r-- root/root 22 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box-alitest.nsd -rw-r--r-- root/root 65 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box-alitest.nsi -rw-r--r-- root/root 2497 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box-alitest.nsq -rw-r--r-- root/root 826 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box.hmm.gz -rw-r--r-- root/root 1022 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/3box.sto -rw-r--r-- root/root 14102 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/Caudal_act.hmm.gz -rw-r--r-- root/root 2009 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/Caudal_act.sto.gz -rw-r--r-- root/root 36100 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/LuxC.hmm.gz -rw-r--r-- root/root 4396 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/LuxC.sto.gz -rw-r--r-- root/root 1450 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/M1.hmm -rw-r--r-- root/root 38 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/M1.sto -rw-r--r-- root/root 1093 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/testsuite/Makefile -rw-r--r-- root/root 1145 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/Makefile.in -rw-r--r-- root/root 539 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/PAX8_HUMAN -rw-r--r-- root/root 3552 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/PSE.hmm -rw-r--r-- root/root 846 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/PSE.sto -rw-r--r-- root/root 70531 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/Patched.hmm.gz -rw-r--r-- root/root 6942 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/Patched.sto.gz -rw-r--r-- root/root 7585 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/RRM_1.hmm.gz -rw-r--r-- root/root 7329 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/RRM_1.sto.gz -rw-r--r-- root/root 103062 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/SMC_N.hmm.gz -rw-r--r-- root/root 22557 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/SMC_N.sto.gz -rw-r--r-- root/root 3399 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/XYPPX.hmm -rw-r--r-- root/root 1866 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/XYPPX.sto -rw-r--r-- root/root 14 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/ecori.fa -rw-r--r-- root/root 1624 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/ecori.hmm -rw-r--r-- root/root 44 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/ecori.sto -rw-r--r-- root/root 2917 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/h3.pm -rwxr-xr-x root/root 1828 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i1-build-variation.sh -rwxr-xr-x root/root 3418 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i10-duplicate-names.pl -rwxr-xr-x root/root 2513 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i11-hmmalign-mapali.pl -rwxr-xr-x root/root 2063 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i12-delete-corruption.pl -rwxr-xr-x root/root 3938 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i13-msa-integrity.pl -rwxr-xr-x root/root 2724 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i14-hmmemit-consensus.pl -rw-r--r-- root/root 2408 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i15-hmmconvert.pl.gz -rwxr-xr-x root/root 1147 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i16-build-allins.pl -rw-r--r-- root/root 2950 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i17-stdin.pl.gz -rw-r--r-- root/root 1640 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i18-nhmmer-generic.pl.gz -rw-r--r-- root/root 41012 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/testsuite/i19-hmmpgmd-ga.pl.gz -rwxr-xr-x root/root 1530 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i2-search-variation.sh -rw-r--r-- root/root 1754 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i20-fmindex-core.pl.gz -rw-r--r-- root/root 1507 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i21-rewind.pl.gz -rw-r--r-- root/root 40542 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i22-hmmpgmd-shard-ga.pl.gz -rwxr-xr-x root/root 1122 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i23-bad-fasta.sh -rwxr-xr-x root/root 2317 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i3-seqsearch-variation.sh -rwxr-xr-x root/root 1655 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i4-zerolength-seqs.sh -rwxr-xr-x root/root 2998 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i5-hmmbuild-naming.pl -rwxr-xr-x root/root 1885 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i6-hmmalign-mapali.pl -rwxr-xr-x root/root 1243 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i7-hmmbuild-fragments.pl -rwxr-xr-x root/root 3162 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i8-nonresidues.pl -rw-r--r-- root/root 1186 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/i9-optional-annotation.pl.gz -rw-r--r-- root/root 3008 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/iss159-nhmmer-overlap.py.gz -rw-r--r-- root/root 8248 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/minifam.gz -rwxr-xr-x root/root 2938 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/parse_test_results.py -rw-r--r-- root/root 2497 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/rndseq400-10.fa.gz -rw-r--r-- root/root 5618 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/testsuite/testsuite.sqc.gz drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/examples/tutorial/ -rw-r--r-- root/root 19087 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/7LESS_DROME -rw-r--r-- root/root 183 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/HBB_HUMAN -rw-r--r-- root/root 14842 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/MADE1.hmm -rw-r--r-- root/root 35454 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/MADE1.sto -rw-r--r-- root/root 122014 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/Pkinase.hmm -rw-r--r-- root/root 67852 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/Pkinase.sto -rw-r--r-- root/root 335516 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/dna_target.fa -rw-r--r-- root/root 41101 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/fn3.hmm -rw-r--r-- root/root 24538 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/fn3.sto -rw-r--r-- root/root 70298 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/globins4.hmm -rw-r--r-- root/root 863 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/globins4.sto -rw-r--r-- root/root 7210 2023-08-15 18:26 ./usr/share/doc/hmmer/examples/tutorial/globins45.fa hmmer_3.4+dfsg-2_i386.deb ------------------------- new Debian package, version 2.0. size 1093784 bytes: control archive=1820 bytes. 801 bytes, 19 lines control 2581 bytes, 43 lines md5sums Package: hmmer Version: 3.4+dfsg-2 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 6187 Depends: libc6 (>= 2.34), libdivsufsort3 (>= 2.0.1) Suggests: hmmer-doc (>= 3.4+dfsg-2) Section: science Priority: optional Homepage: http://hmmer.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. drwxr-xr-x root/root 0 2023-09-15 08:08 ./ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/bin/ -rwxr-xr-x root/root 203324 2023-09-15 08:08 ./usr/bin/alimask -rwxr-xr-x root/root 378864 2023-09-15 08:08 ./usr/bin/hmmalign -rwxr-xr-x root/root 353332 2023-09-15 08:08 ./usr/bin/hmmbuild -rwxr-xr-x root/root 124780 2023-09-15 08:08 ./usr/bin/hmmconvert -rwxr-xr-x root/root 166108 2023-09-15 08:08 ./usr/bin/hmmemit -rwxr-xr-x root/root 141324 2023-09-15 08:08 ./usr/bin/hmmfetch -rwxr-xr-x root/root 112460 2023-09-15 08:08 ./usr/bin/hmmlogo -rwxr-xr-x root/root 492924 2023-09-15 08:08 ./usr/bin/hmmpgmd -rwxr-xr-x root/root 501180 2023-09-15 08:08 ./usr/bin/hmmpgmd_shard -rwxr-xr-x root/root 132852 2023-09-15 08:08 ./usr/bin/hmmpress -rwxr-xr-x root/root 437120 2023-09-15 08:08 ./usr/bin/hmmscan -rwxr-xr-x root/root 457728 2023-09-15 08:08 ./usr/bin/hmmsearch -rwxr-xr-x root/root 150676 2023-09-15 08:08 ./usr/bin/hmmsim -rwxr-xr-x root/root 112300 2023-09-15 08:08 ./usr/bin/hmmstat -rwxr-xr-x root/root 542576 2023-09-15 08:08 ./usr/bin/jackhmmer -rwxr-xr-x root/root 260140 2023-09-15 08:08 ./usr/bin/makehmmerdb -rwxr-xr-x root/root 640760 2023-09-15 08:08 ./usr/bin/nhmmer -rwxr-xr-x root/root 461976 2023-09-15 08:08 ./usr/bin/nhmmscan -rwxr-xr-x root/root 484440 2023-09-15 08:08 ./usr/bin/phmmer drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/i386-linux-gnu/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/lib/i386-linux-gnu/hmmer/ -rwxr-xr-x root/root 73004 2023-09-15 08:08 ./usr/lib/i386-linux-gnu/hmmer/hmmc2 drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/doc/hmmer/ -rw-r--r-- root/root 491 2019-09-24 15:59 ./usr/share/doc/hmmer/README.Debian -rw-r--r-- root/root 1164 2023-09-15 08:08 ./usr/share/doc/hmmer/changelog.Debian.gz -rw-r--r-- root/root 5159 2023-09-14 16:33 ./usr/share/doc/hmmer/copyright drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/man/ drwxr-xr-x root/root 0 2023-09-15 08:08 ./usr/share/man/man1/ -rw-r--r-- root/root 3649 2023-09-15 08:08 ./usr/share/man/man1/alimask.1.gz -rw-r--r-- root/root 1565 2023-09-15 08:08 ./usr/share/man/man1/hmmalign.1.gz -rw-r--r-- root/root 5446 2023-09-15 08:08 ./usr/share/man/man1/hmmbuild.1.gz -rw-r--r-- root/root 987 2023-09-15 08:08 ./usr/share/man/man1/hmmconvert.1.gz -rw-r--r-- root/root 2197 2023-09-15 08:08 ./usr/share/man/man1/hmmemit.1.gz -rw-r--r-- root/root 2204 2023-09-15 08:08 ./usr/share/man/man1/hmmer.1.gz -rw-r--r-- root/root 1779 2023-09-15 08:08 ./usr/share/man/man1/hmmfetch.1.gz -rw-r--r-- root/root 1074 2023-09-15 08:08 ./usr/share/man/man1/hmmlogo.1.gz -rw-r--r-- root/root 2076 2023-09-15 08:08 ./usr/share/man/man1/hmmpgmd.1.gz -rw-r--r-- root/root 1720 2023-09-15 08:08 ./usr/share/man/man1/hmmpgmd_shard.1.gz -rw-r--r-- root/root 917 2023-09-15 08:08 ./usr/share/man/man1/hmmpress.1.gz -rw-r--r-- root/root 4519 2023-09-15 08:08 ./usr/share/man/man1/hmmscan.1.gz -rw-r--r-- root/root 4440 2023-09-15 08:08 ./usr/share/man/man1/hmmsearch.1.gz -rw-r--r-- root/root 5220 2023-09-15 08:08 ./usr/share/man/man1/hmmsim.1.gz -rw-r--r-- root/root 1339 2023-09-15 08:08 ./usr/share/man/man1/hmmstat.1.gz -rw-r--r-- root/root 7566 2023-09-15 08:08 ./usr/share/man/man1/jackhmmer.1.gz -rw-r--r-- root/root 1432 2023-09-15 08:08 ./usr/share/man/man1/makehmmerdb.1.gz -rw-r--r-- root/root 6755 2023-09-15 08:08 ./usr/share/man/man1/nhmmer.1.gz -rw-r--r-- root/root 4868 2023-09-15 08:08 ./usr/share/man/man1/nhmmscan.1.gz -rw-r--r-- root/root 5043 2023-09-15 08:08 ./usr/share/man/man1/phmmer.1.gz +------------------------------------------------------------------------------+ | Post Build Mon, 28 Jul 2025 21:28:16 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 28 Jul 2025 21:28:16 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 28 Jul 2025 21:28:18 +0000 | +------------------------------------------------------------------------------+ Build Architecture: i386 Build Type: any Build-Space: 236972 Build-Time: 804 Distribution: unstable Host Architecture: i386 Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderda40T05/inputs/hmmer_3.4+dfsg-2.dsc Machine Architecture: amd64 Package: hmmer Package-Time: 821 Source-Version: 3.4+dfsg-2 Space: 236972 Status: successful Version: 3.4+dfsg-2 -------------------------------------------------------------------------------- Finished at 2025-07-28T21:28:13Z Build needed 00:13:41, 236972k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderda40T05/out checking hmmer-dbgsym_3.4+dfsg-2_i386.deb: size... md5... sha256... sha1... all OK checking hmmer-examples_3.4+dfsg-2_i386.deb: size differs for hmmer-examples_3.4+dfsg-2_i386.deb