=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdRMQvC0/inputs/mdtraj_1.10.3-2+b1_i386.buildinfo Source: mdtraj Version: 1.10.3-2 rebuilderd-worker node: infom07-amd64 +------------------------------------------------------------------------------+ | Downloading sources Thu, 12 Mar 2026 14:08:42 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [60.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [137 kB] Get:7 https://deb.debian.org/debian sid InRelease [187 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6552 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [138 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [194 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [159 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [2464 B] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [8308 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:19 https://deb.debian.org/debian sid/main Sources [11.4 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.5 kB] Get:21 https://deb.debian.org/debian experimental/main Sources [435 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2572 B] Fetched 34.4 MB in 3s (10.4 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.10.3-2.dsc' mdtraj_1.10.3-2.dsc 2677 SHA256:048229b31a36c708f0a511c30255f2a4d7c4e19d7a1ec21855d4c787e30db0d3 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.10.3.orig.tar.gz' mdtraj_1.10.3.orig.tar.gz 21993979 SHA256:e6204f7c8b37a4d18f1acab1b44391228000faaa84ac40d720ed99b35e4c0807 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.10.3-2.debian.tar.xz' mdtraj_1.10.3-2.debian.tar.xz 299712 SHA256:53d8090fbdab0638f70e1c2f3aad5b958a94cb601f6d42743becddd55a49ef6a e6204f7c8b37a4d18f1acab1b44391228000faaa84ac40d720ed99b35e4c0807 mdtraj_1.10.3.orig.tar.gz 53d8090fbdab0638f70e1c2f3aad5b958a94cb601f6d42743becddd55a49ef6a mdtraj_1.10.3-2.debian.tar.xz 048229b31a36c708f0a511c30255f2a4d7c4e19d7a1ec21855d4c787e30db0d3 mdtraj_1.10.3-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Thu, 12 Mar 2026 14:08:46 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdRMQvC0/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdRMQvC0/inputs/mdtraj_1.10.3-2+b1_i386.buildinfo Rebuilding mdtraj=1.10.3-2 in /srv/rebuilderd/tmp/rebuilderdRMQvC0/inputs now. /srv/rebuilderd/tmp/rebuilderdRMQvC0/inputs/mdtraj_1.10.3-2+b1_i386.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mdtraj-1.10.3 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [187 kB] Get:2 http://snapshot.debian.org/archive/debian/20250224T085051Z sid InRelease [205 kB] Get:3 http://snapshot.debian.org/archive/debian/20250304T145039Z sid InRelease [205 kB] Get:4 http://deb.debian.org/debian unstable/main i386 Packages [10.1 MB] Get:5 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 Packages [9856 kB] Get:6 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 Packages [9846 kB] Fetched 30.4 MB in 3s (12.0 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250224T085051Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20250304T145039Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpam0g i386 1.7.0-3 [72.7 kB] Fetched 72.7 kB in 0s (5392 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjiaeo3rs/libpam0g_1.7.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (50.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpddv1j2hd/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (1574 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3dq6zwbo/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3-all i386 3.13.2-1 [1048 B] Fetched 1048 B in 0s (86.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt0d33gsp/python3-all_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB] Fetched 151 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpatwmn4t2/libngtcp2-16_1.9.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 coreutils i386 9.5-1 [2990 kB] Fetched 2990 kB in 0s (118 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyb7iaobg/coreutils_9.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Fetched 35.0 kB in 0s (3026 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpewwf6hof/libkrb5support0_1.21.3-4_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Fetched 5667 kB in 0s (129 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp83h_l7zf/libjs-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Fetched 1985 kB in 0s (83.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn26h_f2b/libpython3.13-stdlib_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 openssl-provider-legacy i386 3.4.1-1 [298 kB] Fetched 298 kB in 0s (21.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd5veiz1i/openssl-provider-legacy_3.4.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 ncurses-base all 6.5+20250216-1 [273 kB] Fetched 273 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i69nyop/ncurses-base_6.5+20250216-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-cftime i386 1.6.4-1+b3 [305 kB] Fetched 305 kB in 0s (21.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdj6i08v0/python3-cftime_1.6.4-1+b3_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-webencodings all 0.5.1-5 [11.1 kB] Fetched 11.1 kB in 0s (737 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpswarghaf/python3-webencodings_0.5.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsodium23 i386 1.0.18-1+b2 [186 kB] Fetched 186 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpddekjiju/libsodium23_1.0.18-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libacl1 i386 2.3.2-2+b1 [34.4 kB] Fetched 34.4 kB in 0s (3031 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_mrcybbn/libacl1_2.3.2-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 g++-i686-linux-gnu i386 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (105 kB/s) dpkg-name: info: moved 'g++-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmpxyvtj7bv/g++-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Fetched 58.0 kB in 0s (4970 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6cy328zq/python3-snowballstemmer_2.2.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Fetched 57.7 kB in 0s (4473 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfezq8nxs/libpsl5t64_0.21.2-1.1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsframe1 i386 2.44-2 [78.4 kB] Fetched 78.4 kB in 0s (7428 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsk4l6pno/libsframe1_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libstdc++-14-dev i386 14.2.0-17 [2441 kB] Fetched 2441 kB in 0s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpame96k7z/libstdc++-14-dev_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libctf-nobfd0 i386 2.44-2 [159 kB] Fetched 159 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3qgaqtg/libctf-nobfd0_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libhdf5-310 i386 1.14.5+repack-3 [1327 kB] Fetched 1327 kB in 0s (52.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6c3_gket/libhdf5-310_1.14.5+repack-3_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Fetched 22.4 kB in 0s (1665 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9wtbmu3/python3-fastjsonschema_2.21.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Fetched 96.5 kB in 0s (8005 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_y40s16d/bsdextrautils_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-alabaster all 0.7.16-0.1 [27.9 kB] Fetched 27.9 kB in 0s (2346 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpojetls2h/python3-alabaster_0.7.16-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python-tables-data all 3.10.2-2 [47.3 kB] Fetched 47.3 kB in 0s (3577 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6d7h3deq/python-tables-data_3.10.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libaudit1 i386 1:4.0.2-2+b1 [53.1 kB] Fetched 53.1 kB in 0s (4224 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b1_i386.deb' to '/srv/rebuilderd/tmp/tmp_khxf8nx/libaudit1_4.0.2-2+b1_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjkwag495/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Fetched 314 kB in 0s (24.8 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3+b1_i386.deb' to '/srv/rebuilderd/tmp/tmpr4q0kv8w/libmagic-mgc_5.45-3+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libattr1 i386 1:2.5.2-3 [23.1 kB] Fetched 23.1 kB in 0s (2226 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_i386.deb' to '/srv/rebuilderd/tmp/tmpfakttp8m/libattr1_2.5.2-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Fetched 21.4 kB in 0s (2073 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9yyy1537/libffi8_3.4.7-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Fetched 2198 kB in 0s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplxib7y14/liblapack3_3.12.1-2_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Fetched 23.5 kB in 0s (1906 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp59wzrphi/python3-cpuinfo_9.0.0+git20221119-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnetcdf22 i386 1:4.9.3-1 [570 kB] Fetched 570 kB in 0s (38.3 MB/s) dpkg-name: info: moved 'libnetcdf22_1%3a4.9.3-1_i386.deb' to '/srv/rebuilderd/tmp/tmprs_4e94b/libnetcdf22_4.9.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 liblz4-1 i386 1.10.0-3 [64.3 kB] Fetched 64.3 kB in 0s (5683 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy61k23q6/liblz4-1_1.10.0-3_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-imagesize all 1.4.1-1 [6688 B] Fetched 6688 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj608klw4/python3-imagesize_1.4.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Fetched 9652 B in 0s (863 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa4zf0y_i/python3-certifi_2025.1.31+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libtinfo6 i386 6.5+20250216-1 [350 kB] Fetched 350 kB in 0s (29.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa0bb_q7s/libtinfo6_6.5+20250216-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libjansson4 i386 2.14-2+b3 [41.6 kB] Fetched 41.6 kB in 0s (3767 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiwjx0de8/libjansson4_2.14-2+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libctf0 i386 2.44-2 [94.4 kB] Fetched 94.4 kB in 0s (8271 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4wu8z5nr/libctf0_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpam-modules i386 1.7.0-3 [190 kB] Fetched 190 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaevtph9y/libpam-modules_1.7.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (22.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmponiylhub/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsz2 i386 1.1.3-1+b1 [8128 B] Fetched 8128 B in 0s (118 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_9w3aacj/libsz2_1.1.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (1140 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa642dt4s/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Fetched 7984 B in 0s (752 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqn6nmv3b/python3-jaraco.context_6.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Fetched 734 kB in 0s (48.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpopsdmhp4/libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libncursesw6 i386 6.5+20250216-1 [148 kB] Fetched 148 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0wcwgh5/libncursesw6_6.5+20250216-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc i386 4:14.2.0-1 [5132 B] Fetched 5132 B in 0s (425 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp_2itmcyg/gcc_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jupyter-client all 8.6.3-2 [92.4 kB] Fetched 92.4 kB in 0s (7208 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz6wbyelm/python3-jupyter-client_8.6.3-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgmp10 i386 2:6.3.0+dfsg-3 [572 kB] Fetched 572 kB in 0s (35.0 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_i386.deb' to '/srv/rebuilderd/tmp/tmpi71w5mcj/libgmp10_6.3.0+dfsg-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libc6 i386 2.40-7 [2685 kB] Fetched 2685 kB in 0s (79.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8woabuu_/libc6_2.40-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libperl5.40 i386 5.40.1-2 [3962 kB] Fetched 3962 kB in 0s (127 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjsycp8x0/libperl5.40_5.40.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libisl23 i386 0.27-1 [747 kB] Fetched 747 kB in 0s (49.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv7chaipg/libisl23_0.27-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Fetched 62.4 kB in 0s (374 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_9wnz81l/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-tinycss2 all 1.4.0-1 [24.9 kB] Fetched 24.9 kB in 0s (2330 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrwwqosu/python3-tinycss2_1.4.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cpp-i686-linux-gnu i386 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (480 kB/s) dpkg-name: info: moved 'cpp-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp7xzi80a9/cpp-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 diffutils i386 1:3.10-2 [391 kB] Fetched 391 kB in 0s (27.9 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-2_i386.deb' to '/srv/rebuilderd/tmp/tmpld_tdkfj/diffutils_3.10-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libc-bin i386 2.40-7 [653 kB] Fetched 653 kB in 0s (45.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxn4k0hh/libc-bin_2.40-7_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 rpcsvc-proto i386 1.4.3-1 [66.1 kB] Fetched 66.1 kB in 0s (5780 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps30m3zd6/rpcsvc-proto_1.4.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgdbm6t64 i386 1.24-2 [80.2 kB] Fetched 80.2 kB in 0s (6692 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzbsr9dzb/libgdbm6t64_1.24-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsasl2-2 i386 2.1.28+dfsg1-8+b1 [61.3 kB] Fetched 61.3 kB in 0s (5184 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4j8qew2f/libsasl2-2_2.1.28+dfsg1-8+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 ncurses-bin i386 6.5+20250216-1 [441 kB] Fetched 441 kB in 0s (33.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxsta5jx9/ncurses-bin_6.5+20250216-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 sgml-base all 1.31 [15.4 kB] Fetched 15.4 kB in 0s (1190 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4olynzzr/sgml-base_1.31_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 sphinx-common all 8.1.3-5 [617 kB] Fetched 617 kB in 0s (40.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4gih9hap/sphinx-common_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgcc-s1 i386 14.2.0-17 [88.2 kB] Fetched 88.2 kB in 0s (7718 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfnz7mgkg/libgcc-s1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Fetched 423 kB in 0s (4133 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphft_n0p0/libp11-kit0_0.25.5-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 g++ i386 4:14.2.0-1 [1340 B] Fetched 1340 B in 0s (130 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmpk0wgt5ls/g++_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-packaging all 24.2-1 [55.3 kB] Fetched 55.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc5ci6tnj/python3-packaging_24.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB] Fetched 75.9 kB in 0s (5994 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpls8vot_i/libnghttp3-9_1.6.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 zlib1g i386 1:1.3.dfsg+really1.3.1-1+b1 [84.7 kB] Fetched 84.7 kB in 0s (6500 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb' to '/srv/rebuilderd/tmp/tmpg4dahu95/zlib1g_1.3.dfsg+really1.3.1-1+b1_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-nbsphinx all 0.9.5+ds-1 [39.9 kB] Fetched 39.9 kB in 0s (3893 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3h6_dw9k/python3-nbsphinx_0.9.5+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Fetched 65.3 kB in 0s (5712 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpedgpo4cs/python3-more-itertools_10.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libubsan1 i386 14.2.0-17 [1055 kB] Fetched 1055 kB in 0s (58.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyet1qf8g/libubsan1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dwz i386 0.15-1+b1 [116 kB] Fetched 116 kB in 0s (9785 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplv38ctlp/dwz_0.15-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 media-types all 12.0.0 [28.9 kB] Fetched 28.9 kB in 0s (2716 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2ssaheu/media-types_12.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jsonschema all 4.19.2-6 [71.4 kB] Fetched 71.4 kB in 0s (6360 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvvrxc1xw/python3-jsonschema_4.19.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB] Fetched 128 kB in 0s (9918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpooqz0fgn/docutils-common_0.21.2+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Fetched 24.3 kB in 0s (2327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_00mc_hw/libcom-err2_1.47.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-urllib3 all 2.3.0-1 [114 kB] Fetched 114 kB in 0s (9015 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpagnfjd8e/python3-urllib3_2.3.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB] Fetched 16.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfna_6z4c/python3-platformdirs_4.3.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Fetched 115 kB in 0s (8980 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3+b1_i386.deb' to '/srv/rebuilderd/tmp/tmp9u8pap64/libmagic1t64_5.45-3+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libseccomp2 i386 2.5.5-2 [50.1 kB] Fetched 50.1 kB in 0s (4318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy98nr851/libseccomp2_2.5.5-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 netbase all 6.4 [12.8 kB] Fetched 12.8 kB in 0s (958 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnpybcyvx/netbase_6.4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libpython3-stdlib i386 3.13.2-1 [10.0 kB] Fetched 10.0 kB in 0s (886 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzjzlb3x2/libpython3-stdlib_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcrypt-dev i386 1:4.4.38-1 [126 kB] Fetched 126 kB in 0s (11.3 MB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_i386.deb' to '/srv/rebuilderd/tmp/tmp6xlnv3ds/libcrypt-dev_4.4.38-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libzstd1 i386 1.5.6+dfsg-2 [289 kB] Fetched 289 kB in 0s (26.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdly6vqt7/libzstd1_1.5.6+dfsg-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Fetched 82.4 kB in 0s (7043 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpak8li_ua/libnghttp2-14_1.64.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 perl-base i386 5.40.1-2 [1775 kB] Fetched 1775 kB in 0s (92.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5l3svk_r/perl-base_5.40.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3-minimal i386 3.13.2-1 [27.1 kB] Fetched 27.1 kB in 0s (2200 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yy8ddut/python3-minimal_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 make i386 4.4.1-1 [470 kB] Fetched 470 kB in 0s (30.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1_ytxfv/make_4.4.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsqlite3-0 i386 3.46.1-1 [988 kB] Fetched 988 kB in 0s (55.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjtisazgl/libsqlite3-0_3.46.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-cffi-backend i386 1.17.1-2+b1 [95.5 kB] Fetched 95.5 kB in 0s (7606 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaljp8e6y/python3-cffi-backend_1.17.1-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-psutil i386 5.9.8-2 [226 kB] Fetched 226 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6939uz3r/python3-psutil_5.9.8-2_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 sed i386 4.9-2 [333 kB] Fetched 333 kB in 0s (24.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2m_4z8ke/sed_4.9-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 tzdata all 2025a-2 [259 kB] Fetched 259 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbhwioqr6/tzdata_2025a-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 file i386 1:5.45-3+b1 [43.2 kB] Fetched 43.2 kB in 0s (3854 kB/s) dpkg-name: info: moved 'file_1%3a5.45-3+b1_i386.deb' to '/srv/rebuilderd/tmp/tmp4h2la_pv/file_5.45-3+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc-14-i686-linux-gnu i386 14.2.0-17 [23.3 MB] Fetched 23.3 MB in 0s (197 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1eht819d/gcc-14-i686-linux-gnu_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB] Fetched 836 kB in 0s (46.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp16ayrl76/python3-pygments_2.18.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-roman all 5.0-1 [10.6 kB] Fetched 10.6 kB in 0s (904 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi49fp4l4/python3-roman_5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg09ct2uo/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libquadmath0 i386 14.2.0-17 [231 kB] Fetched 231 kB in 0s (20.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2nrwlv9j/libquadmath0_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Fetched 51.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy5gw8j3w/libtasn1-6_4.20.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dh-python all 6.20250108 [113 kB] Fetched 113 kB in 0s (8899 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcc8l8ybu/dh-python_6.20250108_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libstdc++6 i386 14.2.0-17 [765 kB] Fetched 765 kB in 0s (48.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphswvp3vt/libstdc++6_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Fetched 37.3 kB in 0s (2934 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp60x8_yrh/python3-typeguard_4.4.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libblosc2-4 i386 2.16.0+ds-1 [218 kB] Fetched 218 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxrnqmvex/libblosc2-4_2.16.0+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Fetched 73.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb78413hl/python3-typing-extensions_4.12.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 perl-modules-5.40 all 5.40.1-2 [3017 kB] Fetched 3017 kB in 0s (123 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf6awd34_/perl-modules-5.40_5.40.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Fetched 15.1 kB in 0s (1385 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb3zo6tti/python3-decorator_5.1.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3.13-dev i386 3.13.2-1 [505 kB] Fetched 505 kB in 0s (35.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxdp1grm3/python3.13-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmpc3 i386 1.3.1-1+b3 [60.5 kB] Fetched 60.5 kB in 0s (4204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxll1c0zi/libmpc3_1.3.1-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc-14-base i386 14.2.0-17 [49.1 kB] Fetched 49.1 kB in 0s (4632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfw3vihx3/gcc-14-base_14.2.0-17_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-pandocfilters all 1.5.1-1 [23.7 kB] Fetched 23.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2vvgobd7/python3-pandocfilters_1.5.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 liblzma5 i386 5.6.3-1+b1 [282 kB] Fetched 282 kB in 0s (18.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj80jup6b/liblzma5_5.6.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB] Fetched 403 kB in 0s (30.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvl74wrng/python3-docutils_0.21.2+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gettext i386 0.23.1-1 [1714 kB] Fetched 1714 kB in 0s (84.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc8revt4p/gettext_0.23.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dpkg-dev all 1.22.15 [1337 kB] Fetched 1337 kB in 0s (83.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpec9obibj/dpkg-dev_1.22.15_all.deb' Get:1 http://deb.debian.org/debian unstable/main i386 findutils i386 4.10.0-3 [714 kB] Fetched 714 kB in 0s (50.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6qg6e35x/findutils_4.10.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcrypt1 i386 1:4.4.38-1 [95.7 kB] Fetched 95.7 kB in 0s (7404 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_i386.deb' to '/srv/rebuilderd/tmp/tmp2h4uuj3v/libcrypt1_4.4.38-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libelf1t64 i386 0.192-4 [195 kB] Fetched 195 kB in 0s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaeuvhv0g/libelf1t64_0.192-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-numpy i386 1:2.2.3+ds-2 [7542 kB] Fetched 7542 kB in 0s (138 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.2.3+ds-2_i386.deb' to '/srv/rebuilderd/tmp/tmpu_c5l11k/python3-numpy_2.2.3+ds-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpam-modules-bin i386 1.7.0-3 [51.0 kB] Fetched 51.0 kB in 0s (4656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi1zpzl7k/libpam-modules-bin_1.7.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgprofng0 i386 2.44-2 [847 kB] Fetched 847 kB in 0s (63.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyuu8hrdr/libgprofng0_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmpfr6 i386 4.2.1-1+b2 [752 kB] Fetched 752 kB in 0s (47.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7qbws6n/libmpfr6_4.2.1-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-setuptools all 75.8.0-1 [724 kB] Fetched 724 kB in 0s (54.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1n428ppp/python3-setuptools_75.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 perl i386 5.40.1-2 [267 kB] Fetched 267 kB in 0s (21.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv8j_ol2f/perl_5.40.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 bash i386 5.2.37-1.1 [1536 kB] Fetched 1536 kB in 0s (89.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplu0uh9dz/bash_5.2.37-1.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbz2-1.0 i386 1.0.8-6 [38.1 kB] Fetched 38.1 kB in 0s (3389 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxjon_yxb/libbz2-1.0_1.0.8-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cpp-14-i686-linux-gnu i386 14.2.0-17 [12.0 MB] Fetched 12.0 MB in 0s (162 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwo6u74o_/cpp-14-i686-linux-gnu_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 openssl i386 3.4.1-1 [1432 kB] Fetched 1432 kB in 0s (71.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz2ymrevd/openssl_3.4.1-1_i386.deb' Downloading dependency 1 of 303: libpam0g:i386=1.7.0-3 Downloading dependency 2 of 303: autopoint:i386=0.23.1-1 Downloading dependency 3 of 303: sensible-utils:i386=0.0.24 Downloading dependency 4 of 303: python3-all:i386=3.13.2-1 Downloading dependency 5 of 303: libngtcp2-16:i386=1.9.1-1 Downloading dependency 6 of 303: coreutils:i386=9.5-1 Downloading dependency 7 of 303: libkrb5support0:i386=1.21.3-4 Downloading dependency 8 of 303: libjs-mathjax:i386=2.7.9+dfsg-1 Downloading dependency 9 of 303: libpython3.13-stdlib:i386=3.13.2-1 Downloading dependency 10 of 303: openssl-provider-legacy:i386=3.4.1-1 Downloading dependency 11 of 303: ncurses-base:i386=6.5+20250216-1 Downloading dependency 12 of 303: python3-cftime:i386=1.6.4-1+b3 Downloading dependency 13 of 303: python3-webencodings:i386=0.5.1-5 Downloading dependency 14 of 303: libsodium23:i386=1.0.18-1+b2 Downloading dependency 15 of 303: libacl1:i386=2.3.2-2+b1 Downloading dependency 16 of 303: g++-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 17 of 303: python3-snowballstemmer:i386=2.2.0-4 Downloading dependency 18 of 303: libpsl5t64:i386=0.21.2-1.1+b1 Downloading dependency 19 of 303: libsframe1:i386=2.44-2 Downloading dependency 20 of 303: libstdc++-14-dev:i386=14.2.0-17 Downloading dependency 21 of 303: libctf-nobfd0:i386=2.44-2 Downloading dependency 22 of 303: libhdf5-310:i386=1.14.5+repack-3 Downloading dependency 23 of 303: python3-fastjsonschema:i386=2.21.1-1 Downloading dependency 24 of 303: bsdextrautils:i386=2.40.4-5 Downloading dependency 25 of 303: python3-alabaster:i386=0.7.16-0.1 Downloading dependency 26 of 303: python-tables-data:i386=3.10.2-2 Downloading dependency 27 of 303: libaudit1:i386=1:4.0.2-2+b1 Downloading dependency 28 of 303: libarchive-zip-perl:i386=1.68-1 Downloading dependency 29 of 303: libmagic-mgc:i386=1:5.45-3+b1 Downloading dependency 30 of 303: libattr1:i386=1:2.5.2-3 Downloading dependency 31 of 303: libffi8:i386=3.4.7-1 Downloading dependency 32 of 303: liblapack3:i386=3.12.1-2 Downloading dependency 33 of 303: python3-cpuinfo:i386=9.0.0+git20221119-3 Downloading dependency 34 of 303: libnetcdf22:i386=1:4.9.3-1 Downloading dependency 35 of 303: liblz4-1:i386=1.10.0-3 Downloading dependency 36 of 303: python3-imagesize:i386=1.4.1-1 Downloading dependency 37 of 303: python3-certifi:i386=2025.1.31+ds-1 Downloading dependency 38 of 303: libtinfo6:i386=6.5+20250216-1 Downloading dependency 39 of 303: libjansson4:i386=2.14-2+b3 Downloading dependency 40 of 303: libctf0:i386=2.44-2 Downloading dependency 41 of 303: libpam-modules:i386=1.7.0-3 Downloading dependency 42 of 303: po-debconf:i386=1.0.21+nmu1 Downloading dependency 43 of 303: libsz2:i386=1.1.3-1+b1 Downloading dependency 44 of 303: python3-autocommand:i386=2.2.2-3 Downloading dependency 45 of 303: python3-jaraco.context:i386=6.0.0-1 Downloading dependency 46 of 303: libxml2:i386=2.12.7+dfsg+really2.9.14-0.2+b1 Downloading dependency 47 of 303: libncursesw6:i386=6.5+20250216-1 Downloading dependency 48 of 303: gcc:i386=4:14.2.0-1 Downloading dependency 49 of 303: python3-jupyter-client:i386=8.6.3-2 Downloading dependency 50 of 303: libgmp10:i386=2:6.3.0+dfsg-3 Downloading dependency 51 of 303: libc6:i386=2.40-7 Downloading dependency 52 of 303: libperl5.40:i386=5.40.1-2 Downloading dependency 53 of 303: libisl23:i386=0.27-1 Downloading dependency 54 of 303: librtmp1:i386=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 55 of 303: python3-tinycss2:i386=1.4.0-1 Downloading dependency 56 of 303: cpp-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 57 of 303: diffutils:i386=1:3.10-2 Downloading dependency 58 of 303: libc-bin:i386=2.40-7 Downloading dependency 59 of 303: rpcsvc-proto:i386=1.4.3-1 Downloading dependency 60 of 303: libgdbm6t64:i386=1.24-2 Downloading dependency 61 of 303: libsasl2-2:i386=2.1.28+dfsg1-8+b1 Downloading dependency 62 of 303: ncurses-bin:i386=6.5+20250216-1 Downloading dependency 63 of 303: sgml-base:i386=1.31 Downloading dependency 64 of 303: sphinx-common:i386=8.1.3-5 Downloading dependency 65 of 303: libgcc-s1:i386=14.2.0-17 Downloading dependency 66 of 303: libp11-kit0:i386=0.25.5-3 Downloading dependency 67 of 303: g++:i386=4:14.2.0-1 Downloading dependency 68 of 303: python3-packaging:i386=24.2-1 Downloading dependency 69 of 303: libnghttp3-9:i386=1.6.0-2 Downloading dependency 70 of 303: zlib1g:i386=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 71 of 303: python3-nbsphinx:i386=0.9.5+ds-1 Downloading dependency 72 of 303: python3-more-itertools:i386=10.6.0-1 Downloading dependency 73 of 303: libubsan1:i386=14.2.0-17 Downloading dependency 74 of 303: dwz:i386=0.15-1+b1 Downloading dependency 75 of 303: media-types:i386=12.0.0 Downloading dependency 76 of 303: python3-jsonschema:i386=4.19.2-6 Downloading dependency 77 of 303: docutils-common:i386=0.21.2+dfsg-2 Downloading dependency 78 of 303: libcom-err2:i386=1.47.2-1 Downloading dependency 79 of 303: python3-urllib3:i386=2.3.0-1 Downloading dependency 80 of 303: python3-platformdirs:i386=4.3.6-1 Downloading dependency 81 of 303: libmagic1t64:i386=1:5.45-3+b1 Downloading dependency 82 of 303: libseccomp2:i386=2.5.5-2 Downloading dependency 83 of 303: netbase:i386=6.4 Downloading dependency 84 of 303: libpython3-stdlib:i386=3.13.2-1 Downloading dependency 85 of 303: libcrypt-dev:i386=1:4.4.38-1 Downloading dependency 86 of 303: libzstd1:i386=1.5.6+dfsg-2 Downloading dependency 87 of 303: libnghttp2-14:i386=1.64.0-1 Downloading dependency 88 of 303: perl-base:i386=5.40.1-2 Downloading dependency 89 of 303: python3-minimal:i386=3.13.2-1 Downloading dependency 90 of 303: make:i386=4.4.1-1 Downloading dependency 91 of 303: libsqlite3-0:i386=3.46.1-1 Downloading dependency 92 of 303: python3-cffi-backend:i386=1.17.1-2+b1 Downloading dependency 93 of 303: python3-psutil:i386=5.9.8-2 Downloading dependency 94 of 303: sed:i386=4.9-2 Downloading dependency 95 of 303: tzdata:i386=2025a-2 Downloading dependency 96 of 303: file:i386=1:5.45-3+b1 Downloading dependency 97 of 303: gcc-14-i686-linux-gnu:i386=14.2.0-17 Downloading dependency 98 of 303: python3-pygments:i386=2.18.0+dfsg-2 Downloading dependency 99 of 303: python3-roman:i386=5.0-1 Downloading dependency 100 of 303: readline-common:i386=8.2-6 Downloading dependency 101 of 303: libquadmath0:i386=14.2.0-17 Downloading dependency 102 of 303: libtasn1-6:i386=4.20.0-2 Downloading dependency 103 of 303: dh-python:i386=6.20250108 Downloading dependency 104 of 303: libstdc++6:i386=14.2.0-17 Downloading dependency 105 of 303: python3-typeguard:i386=4.4.2-1 Downloading dependency 106 of 303: libblosc2-4:i386=2.16.0+ds-1 Downloading dependency 107 of 303: python3-typing-extensions:i386=4.12.2-2 Downloading dependency 108 of 303: perl-modules-5.40:i386=5.40.1-2 Downloading dependency 109 of 303: python3-decorator:i386=5.1.1-5 Downloading dependency 110 of 303: python3.13-dev:i386=3.13.2-1 Downloading dependency 111 of 303: libmpc3:i386=1.3.1-1+b3 Downloading dependency 112 of 303: gcc-14-base:i386=14.2.0-17 Downloading dependency 113 of 303: python3-pandocfilters:i386=1.5.1-1 Downloading dependency 114 of 303: liblzma5:i386=5.6.3-1+b1 Downloading dependency 115 of 303: python3-docutils:i386=0.21.2+dfsg-2 Downloading dependency 116 of 303: gettext:i386=0.23.1-1 Downloading dependency 117 of 303: dpkg-dev:i386=1.22.15 Downloading dependency 118 of 303: findutils:i386=4.10.0-3 Downloading dependency 119 of 303: libcrypt1:i386=1:4.4.38-1 Downloading dependency 120 of 303: libelf1t64:i386=0.192-4 Downloading dependency 121 of 303: python3-numpy:i386=1:2.2.3+ds-2 Downloading dependency 122 of 303: libpam-modules-bin:i386=1.7.0-3 Downloading dependency 123 of 303: libgprofng0:i386=2.44-2 Downloading dependency 124 of 303: libmpfr6:i386=4.2.1-1+b2 Downloading dependency 125 of 303: python3-setuptools:i386=75.8.0-1 Downloading dependency 126 of 303: perl:i386=5.40.1-2 Downloading dependency 127 of 303: bash:i386=5.2.37-1.1 Downloading dependency 128 of 303: libbz2-1.0:i386=1.0.8-6 Downloading dependency 129 of 303: cpp-14-i686-linux-gnu:i386=14.2.0-17 Downloading dependency 130 of 303: openssl:i386=3.4.1-1 Downloading dependency 131 of 303: libgnutls30t64:i386=3.8.9-2Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB] Fetched 1462 kB in 0s (89.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpps84yw0n/libgnutls30t64_3.8.9-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 bsdutils i386 1:2.40.4-5 [112 kB] Fetched 112 kB in 0s (6877 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.40.4-5_i386.deb' to '/srv/rebuilderd/tmp/tmp2zddg5v5/bsdutils_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Fetched 30.5 kB in 0s (2990 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9dekicpm/libjs-sphinxdoc_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpcre2-8-0 i386 10.45-1 [295 kB] Fetched 295 kB in 0s (20.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvpavwk72/libpcre2-8-0_10.45-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libcurl3t64-gnutls i386 8.12.1-3 [411 kB] Fetched 411 kB in 0s (26.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu20l_q6w/libcurl3t64-gnutls_8.12.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 g++-14-i686-linux-gnu i386 14.2.0-17 [13.0 MB] Fetched 13.0 MB in 0s (181 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxl50sidw/g++-14-i686-linux-gnu_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-zmq i386 26.2.1-1 [210 kB] Fetched 210 kB in 0s (15.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp154m09il/python3-zmq_26.2.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (1454 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31xaux6s/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-markupsafe i386 2.1.5-1+b2 [13.9 kB] Fetched 13.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprh5dpxyd/python3-markupsafe_2.1.5-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pytz all 2025.1-3 [150 kB] Fetched 150 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc95tshzx/python3-pytz_2025.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnettle8t64 i386 3.10.1-1 [318 kB] Fetched 318 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ghof6d7/libnettle8t64_3.10.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-nbclient all 0.8.0-2 [62.2 kB] Fetched 62.2 kB in 0s (5806 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy_qn5ak5/python3-nbclient_0.8.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-bs4 all 4.13.3-1 [166 kB] Fetched 166 kB in 0s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3clm8iwd/python3-bs4_4.13.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdebconfclient0 i386 0.277 [10.4 kB] Fetched 10.4 kB in 0s (869 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqg2mf5fk/libdebconfclient0_0.277_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-scipy i386 1.14.1-4 [20.1 MB] Fetched 20.1 MB in 0s (90.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5heni_ft/python3-scipy_1.14.1-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 base-passwd i386 3.6.6 [53.7 kB] Fetched 53.7 kB in 0s (5361 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_kgveuuy/base-passwd_3.6.6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcap-ng0 i386 0.8.5-4 [17.6 kB] Fetched 17.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8tiqkbpx/libcap-ng0_0.8.5-4_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 dash i386 0.5.12-12 [103 kB] Fetched 103 kB in 0s (8989 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzuxb49u8/dash_0.5.12-12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 mawk i386 1.3.4.20250131-1 [144 kB] Fetched 144 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxjpn6tzp/mawk_1.3.4.20250131-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 binutils i386 2.44-2 [269 kB] Fetched 269 kB in 0s (21.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp88i3iwy5/binutils_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgcc-14-dev i386 14.2.0-17 [2581 kB] Fetched 2581 kB in 0s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp505nehxc/libgcc-14-dev_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Fetched 116 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc2lzydfs/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsnappy1v5 i386 1.2.1-1+b1 [31.3 kB] Fetched 31.3 kB in 0s (741 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb47was94/libsnappy1v5_1.2.1-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdpkg-perl all 1.22.15 [648 kB] Fetched 648 kB in 0s (37.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp56py0nnj/libdpkg-perl_1.22.15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 liblzo2-2 i386 2.10-3+b1 [59.5 kB] Fetched 59.5 kB in 0s (5167 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvfms971w/liblzo2-2_2.10-3+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 ca-certificates all 20241223 [164 kB] Fetched 164 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu9644ltb/ca-certificates_20241223_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsystemd0 i386 257.3-1 [482 kB] Fetched 482 kB in 0s (37.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9mo8ivvn/libsystemd0_257.3-1_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Fetched 20.1 kB in 0s (1737 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi7t32vqo/xml-core_0.19_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-rpds-py i386 0.21.0-2 [313 kB] Fetched 313 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkb8m1zpc/python3-rpds-py_0.21.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-numexpr i386 2.10.2-1+b1 [132 kB] Fetched 132 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb2giep2s/python3-numexpr_2.10.2-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libc6-dev i386 2.40-7 [1775 kB] Fetched 1775 kB in 0s (76.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe1elrgdv/libc6-dev_2.40-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Fetched 90.9 kB in 0s (8678 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkv02z3__/libdebhelper-perl_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libmd0 i386 1.1.0-2+b1 [38.4 kB] Fetched 38.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp34xph4qh/libmd0_1.1.0-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libzmq5 i386 4.3.5-1+b3 [308 kB] Fetched 308 kB in 0s (22.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppob4jt_h/libzmq5_4.3.5-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libdb5.3t64 i386 5.3.28+dfsg2-9 [767 kB] Fetched 767 kB in 0s (52.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt7j6o7wf/libdb5.3t64_5.3.28+dfsg2-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3 i386 3.13.2-1 [28.1 kB] Fetched 28.1 kB in 0s (2003 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1rez4t4w/python3_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (36.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1_ov1418/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Fetched 79.3 kB in 0s (5373 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpachcsft3/python3-dateutil_2.9.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-referencing all 0.35.1-2 [23.5 kB] Fetched 23.5 kB in 0s (1999 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6s215a9s/python3-referencing_0.35.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 debianutils i386 5.21 [92.4 kB] Fetched 92.4 kB in 0s (8063 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3jfsv51q/debianutils_5.21_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 g++-14 i386 14.2.0-17 [22.1 kB] Fetched 22.1 kB in 0s (1695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph_399jx1/g++-14_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpython3.13-dev i386 3.13.2-1 [5181 kB] Fetched 5181 kB in 0s (120 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdt601tqf/libpython3.13-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Fetched 41.2 kB in 0s (3740 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo723imk3/libpipeline1_1.5.8-1_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 gzip i386 1.13-1 [139 kB] Fetched 139 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplh3zkkuy/gzip_1.13-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Fetched 70.9 kB in 0s (6000 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4845e2vp/python3-traitlets_5.14.3+really5.14.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Fetched 354 kB in 0s (27.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp__0ujxra/libkrb5-3_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB] Fetched 130 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkpgop13a/libidn2-0_2.3.7-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libpython3-dev i386 3.13.2-1 [10.3 kB] Fetched 10.3 kB in 0s (991 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp676m2sia/libpython3-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libuuid1 i386 2.40.4-5 [37.6 kB] Fetched 37.6 kB in 0s (3430 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7q6umxpx/libuuid1_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libhogweed6t64 i386 3.10.1-1 [338 kB] Fetched 338 kB in 0s (25.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc1r5vckq/libhogweed6t64_3.10.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pandas-lib i386 2.2.3+dfsg-8 [6848 kB] Fetched 6848 kB in 0s (131 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptetuyxf4/python3-pandas-lib_2.2.3+dfsg-8_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 xz-utils i386 5.6.3-1+b1 [546 kB] Fetched 546 kB in 0s (40.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87nhct7o/xz-utils_5.6.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-gsd i386 3.4.2-2 [238 kB] Fetched 238 kB in 0s (15.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3tq83yhp/python3-gsd_3.4.2-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gettext-base i386 0.23.1-1 [245 kB] Fetched 245 kB in 0s (20.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwq1ch1in/gettext-base_0.23.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB] Fetched 19.1 kB in 0s (1837 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnonqjurl/libngtcp2-crypto-gnutls8_1.9.1-1_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB] Fetched 43.4 kB in 0s (3555 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprflzcaz6/python3-defusedxml_0.7.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libmount1 i386 2.40.4-5 [214 kB] Fetched 214 kB in 0s (17.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_prh54d/libmount1_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 916 kB in 0s (60.3 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb' to '/srv/rebuilderd/tmp/tmpky0rto8d/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libblas3 i386 3.12.1-2 [150 kB] Fetched 150 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23_lda7u/libblas3_3.12.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Fetched 308 kB in 0s (21.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeeroi5z8/libbrotli1_1.1.0-2+b6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-tables-lib i386 3.10.2-2 [774 kB] Fetched 774 kB in 0s (48.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy8dwg4yn/python3-tables-lib_3.10.2-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-tz all 2025.1-3 [4004 B] Fetched 4004 B in 0s (352 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmldh5p6p/python3-tz_2025.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc-i686-linux-gnu i386 4:14.2.0-1 [1428 B] Fetched 1428 B in 0s (119 kB/s) dpkg-name: info: moved 'gcc-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmpu54mfbrm/gcc-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 util-linux i386 2.40.4-5 [1237 kB] Fetched 1237 kB in 0s (73.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr46k9jie/util-linux_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (1147 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpgfw4996o/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libsmartcols1 i386 2.40.4-5 [148 kB] Fetched 148 kB in 0s (9391 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp29a59t3g/libsmartcols1_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-charset-normalizer i386 3.4.1-1 [142 kB] Fetched 142 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbs8xtov3/python3-charset-normalizer_3.4.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libexpat1 i386 2.6.4-1 [107 kB] Fetched 107 kB in 0s (9423 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp10oqzhod/libexpat1_2.6.4-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-soupsieve all 2.6-1 [38.3 kB] Fetched 38.3 kB in 0s (3802 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbvn33_c5/python3-soupsieve_2.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgfortran5 i386 14.2.0-17 [735 kB] Fetched 735 kB in 0s (49.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1y2fmsq1/libgfortran5_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 debconf all 1.5.89 [120 kB] Fetched 120 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptbgme_sh/debconf_1.5.89_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3-dev i386 3.13.2-1 [26.1 kB] Fetched 26.1 kB in 0s (2288 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpem4gbz9w/python3-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dpkg i386 1.22.15 [1563 kB] Fetched 1563 kB in 0s (93.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6i3htxn4/dpkg_1.22.15_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (835 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp310vfvv7/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbh5nry3k/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1824 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx6dwq8hp/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jinja2 all 3.1.5-2 [107 kB] Fetched 107 kB in 0s (8775 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7zsfl1q9/python3-jinja2_3.1.5-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libunistring5 i386 1.3-1 [458 kB] Fetched 458 kB in 0s (34.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11gbreaj/libunistring5_1.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libblosc1 i386 1.21.5+ds-1+b2 [51.4 kB] Fetched 51.4 kB in 0s (4641 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp10kfyag3/libblosc1_1.21.5+ds-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 patch i386 2.7.6-7 [141 kB] Fetched 141 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppsc134nf/patch_2.7.6-7_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-jupyterlab-pygments all 0.2.2-3 [6096 B] Fetched 6096 B in 0s (549 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ngwh_84/python3-jupyterlab-pygments_0.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3.13 i386 3.13.2-1 [745 kB] Fetched 745 kB in 0s (48.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzm3j4cj/python3.13_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4p6myyfk/libpam-runtime_1.7.0-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main i386 libjson-perl all 4.10000-1 [87.5 kB] Fetched 87.5 kB in 0s (6384 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbndx1to6/libjson-perl_4.10000-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b2 [29.5 kB] Fetched 29.5 kB in 0s (2685 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_lrz0hl2/liblbfgsb0_3.0+dfsg.4-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cython3 i386 3.0.11+dfsg-2 [3020 kB] Fetched 3020 kB in 0s (95.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzo8bhi5u/cython3_3.0.11+dfsg-2_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-nbsphinx-link all 1.3.0-4 [6264 B] Fetched 6264 B in 0s (524 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13z1u0y6/python3-nbsphinx-link_1.3.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 gcc-14 i386 14.2.0-17 [537 kB] Fetched 537 kB in 0s (43.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpno3mo3dn/gcc-14_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB] Fetched 205 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzcsk5hys/libldap2_2.6.9+dfsg-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libatomic1 i386 14.2.0-17 [7644 B] Fetched 7644 B in 0s (544 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwb3mjl8h/libatomic1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-attr all 25.1.0-1 [68.7 kB] Fetched 68.7 kB in 0s (6341 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbfkolmc4/python3-attr_25.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1w9dehu/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libnorm1t64 i386 1.5.9+dfsg-3.1+b2 [239 kB] Fetched 239 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv2qd8vn3/libnorm1t64_1.5.9+dfsg-3.1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-babel all 2.17.0-1 [117 kB] Fetched 117 kB in 0s (9751 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3h0xcu0c/python3-babel_2.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jupyter-core all 5.7.2-5 [35.3 kB] Fetched 35.3 kB in 0s (2843 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnvopdt_k/python3-jupyter-core_5.7.2-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-nbconvert all 7.16.6-1 [160 kB] Fetched 160 kB in 1s (262 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpltq6obpd/python3-nbconvert_7.16.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-tables all 3.10.2-2 [353 kB] Fetched 353 kB in 0s (28.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz1a1i9q4/python3-tables_3.10.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-sphinx all 8.1.3-5 [468 kB] Fetched 468 kB in 0s (29.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps3lia1tb/python3-sphinx_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 sysvinit-utils i386 3.14-1 [33.9 kB] Fetched 33.9 kB in 0s (2921 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbda4bze/sysvinit-utils_3.14-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python-tinycss2-common all 1.4.0-1 [44.8 kB] Fetched 44.8 kB in 0s (2802 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lij3gfi/python-tinycss2-common_1.4.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-mistune all 3.0.2-2 [33.2 kB] Fetched 33.2 kB in 0s (2299 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps00kyiro/python3-mistune_3.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgomp1 i386 14.2.0-17 [138 kB] Fetched 138 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe3eilhot/libgomp1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (3917 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw_5waiiy/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libicu72 i386 72.1-6 [9582 kB] Fetched 9582 kB in 0s (159 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuz2zaw9k/libicu72_72.1-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpython3.13 i386 3.13.2-1 [2199 kB] Fetched 2199 kB in 0s (85.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3z33dp_m/libpython3.13_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 debhelper all 13.24.1 [920 kB] Fetched 920 kB in 0s (63.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62i6rn8a/debhelper_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 python3-all-dev i386 3.13.2-1 [1068 B] Fetched 1068 B in 0s (104 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i4f_3_d/python3-all-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 tar i386 1.35+dfsg-3.1 [838 kB] Fetched 838 kB in 0s (47.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa5efx45g/tar_1.35+dfsg-3.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-html5lib all 1.2-1 [92.2 kB] Fetched 92.2 kB in 0s (7561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1uxifyk/python3-html5lib_1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbsd0 i386 0.12.2-2 [134 kB] Fetched 134 kB in 0s (9767 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw4ufucs9/libbsd0_0.12.2-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 automake all 1:1.17-3 [862 kB] Fetched 862 kB in 0s (51.2 MB/s) dpkg-name: info: moved 'automake_1%3a1.17-3_all.deb' to '/srv/rebuilderd/tmp/tmpa93docoi/automake_1.17-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main i386 hostname i386 3.25 [11.3 kB] Fetched 11.3 kB in 0s (1000 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx5642b5z/hostname_3.25_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 binutils-common i386 2.44-2 [2508 kB] Fetched 2508 kB in 0s (117 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl8xnytnj/binutils-common_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-idna all 3.10-1 [42.0 kB] Fetched 42.0 kB in 0s (3772 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl29_9ubc/python3-idna_3.10-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-nbformat all 5.9.1-1 [45.1 kB] Fetched 45.1 kB in 0s (3714 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8h27h1bp/python3-nbformat_5.9.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libxxhash0 i386 0.8.3-2 [39.4 kB] Fetched 39.4 kB in 0s (2935 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd3y189x7/libxxhash0_0.8.3-2_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Fetched 108 kB in 0s (7442 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnx2ae0ny/python3-chardet_5.2.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 linux-libc-dev all 6.12.16-1 [2522 kB] Fetched 2522 kB in 0s (90.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq9vu7v09/linux-libc-dev_6.12.16-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-bleach all 6.2.0-1 [51.2 kB] Fetched 51.2 kB in 0s (4890 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfnvbf4dq/python3-bleach_6.2.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Fetched 9020 B in 0s (781 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp65p829vs/python3-jsonschema-specifications_2023.12.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 groff-base i386 1.23.0-7 [1199 kB] Fetched 1199 kB in 0s (66.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpua8wc5ut/groff-base_1.23.0-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 bzip2 i386 1.0.8-6 [40.7 kB] Fetched 40.7 kB in 0s (3372 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89j88rly/bzip2_1.0.8-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-netcdf4 i386 1.7.2-1+b3 [843 kB] Fetched 843 kB in 0s (52.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr150hgrl/python3-netcdf4_1.7.2-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libpython3-all-dev i386 3.13.2-1 [1068 B] Fetched 1068 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6kjf1ym/libpython3-all-dev_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Fetched 3097 kB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6rp2wb69/python3-pandas_2.2.3+dfsg-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libbinutils i386 2.44-2 [593 kB] Fetched 593 kB in 0s (43.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpffbf_d8z/libbinutils_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libssl3t64 i386 3.4.1-1 [2298 kB] Fetched 2298 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsd6ho8cb/libssl3t64_3.4.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cpp i386 4:14.2.0-1 [1564 B] Fetched 1564 B in 0s (146 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmpxcvumxn5/cpp_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpgm-5.3-0t64 i386 5.3.128~dfsg-2.1+b1 [169 kB] Fetched 169 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpijgkll1s/libpgm-5.3-0t64_5.3.128~dfsg-2.1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (2334 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxrpehar/python3-inflect_7.3.1-2_all.deb' Downloading dependency 132 of 303: bsdutils:i386=1:2.40.4-5 Downloading dependency 133 of 303: libjs-sphinxdoc:i386=8.1.3-5 Downloading dependency 134 of 303: libpcre2-8-0:i386=10.45-1 Downloading dependency 135 of 303: libcurl3t64-gnutls:i386=8.12.1-3 Downloading dependency 136 of 303: g++-14-i686-linux-gnu:i386=14.2.0-17 Downloading dependency 137 of 303: python3-zmq:i386=26.2.1-1 Downloading dependency 138 of 303: dh-autoreconf:i386=20 Downloading dependency 139 of 303: python3-markupsafe:i386=2.1.5-1+b2 Downloading dependency 140 of 303: python3-pytz:i386=2025.1-3 Downloading dependency 141 of 303: libnettle8t64:i386=3.10.1-1 Downloading dependency 142 of 303: python3-nbclient:i386=0.8.0-2 Downloading dependency 143 of 303: python3-bs4:i386=4.13.3-1 Downloading dependency 144 of 303: libdebconfclient0:i386=0.277 Downloading dependency 145 of 303: python3-scipy:i386=1.14.1-4 Downloading dependency 146 of 303: base-passwd:i386=3.6.6 Downloading dependency 147 of 303: libcap-ng0:i386=0.8.5-4 Downloading dependency 148 of 303: dash:i386=0.5.12-12 Downloading dependency 149 of 303: mawk:i386=1.3.4.20250131-1 Downloading dependency 150 of 303: binutils:i386=2.44-2 Downloading dependency 151 of 303: libgcc-14-dev:i386=14.2.0-17 Downloading dependency 152 of 303: libjs-underscore:i386=1.13.4~dfsg+~1.11.4-3 Downloading dependency 153 of 303: libsnappy1v5:i386=1.2.1-1+b1 Downloading dependency 154 of 303: libdpkg-perl:i386=1.22.15 Downloading dependency 155 of 303: liblzo2-2:i386=2.10-3+b1 Downloading dependency 156 of 303: ca-certificates:i386=20241223 Downloading dependency 157 of 303: libsystemd0:i386=257.3-1 Downloading dependency 158 of 303: xml-core:i386=0.19 Downloading dependency 159 of 303: python3-rpds-py:i386=0.21.0-2 Downloading dependency 160 of 303: python3-numexpr:i386=2.10.2-1+b1 Downloading dependency 161 of 303: libc6-dev:i386=2.40-7 Downloading dependency 162 of 303: libdebhelper-perl:i386=13.24.1 Downloading dependency 163 of 303: libmd0:i386=1.1.0-2+b1 Downloading dependency 164 of 303: libzmq5:i386=4.3.5-1+b3 Downloading dependency 165 of 303: libdb5.3t64:i386=5.3.28+dfsg2-9 Downloading dependency 166 of 303: python3:i386=3.13.2-1 Downloading dependency 167 of 303: autoconf:i386=2.72-3 Downloading dependency 168 of 303: python3-dateutil:i386=2.9.0-3 Downloading dependency 169 of 303: python3-referencing:i386=0.35.1-2 Downloading dependency 170 of 303: debianutils:i386=5.21 Downloading dependency 171 of 303: g++-14:i386=14.2.0-17 Downloading dependency 172 of 303: libpython3.13-dev:i386=3.13.2-1 Downloading dependency 173 of 303: libpipeline1:i386=1.5.8-1 Downloading dependency 174 of 303: gzip:i386=1.13-1 Downloading dependency 175 of 303: python3-traitlets:i386=5.14.3+really5.14.3-1 Downloading dependency 176 of 303: libkrb5-3:i386=1.21.3-4 Downloading dependency 177 of 303: libidn2-0:i386=2.3.7-2+b1 Downloading dependency 178 of 303: libpython3-dev:i386=3.13.2-1 Downloading dependency 179 of 303: libuuid1:i386=2.40.4-5 Downloading dependency 180 of 303: libhogweed6t64:i386=3.10.1-1 Downloading dependency 181 of 303: python3-pandas-lib:i386=2.2.3+dfsg-8 Downloading dependency 182 of 303: xz-utils:i386=5.6.3-1+b1 Downloading dependency 183 of 303: python3-gsd:i386=3.4.2-2 Downloading dependency 184 of 303: gettext-base:i386=0.23.1-1 Downloading dependency 185 of 303: libngtcp2-crypto-gnutls8:i386=1.9.1-1 Downloading dependency 186 of 303: python3-defusedxml:i386=0.7.1-3 Downloading dependency 187 of 303: libmount1:i386=2.40.4-5 Downloading dependency 188 of 303: zlib1g-dev:i386=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 189 of 303: libblas3:i386=3.12.1-2 Downloading dependency 190 of 303: libbrotli1:i386=1.1.0-2+b6 Downloading dependency 191 of 303: python3-tables-lib:i386=3.10.2-2 Downloading dependency 192 of 303: python3-tz:i386=2025.1-3 Downloading dependency 193 of 303: gcc-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 194 of 303: util-linux:i386=2.40.4-5 Downloading dependency 195 of 303: libaudit-common:i386=1:4.0.2-2 Downloading dependency 196 of 303: libsmartcols1:i386=2.40.4-5 Downloading dependency 197 of 303: python3-charset-normalizer:i386=3.4.1-1 Downloading dependency 198 of 303: libexpat1:i386=2.6.4-1 Downloading dependency 199 of 303: python3-soupsieve:i386=2.6-1 Downloading dependency 200 of 303: libgfortran5:i386=14.2.0-17 Downloading dependency 201 of 303: debconf:i386=1.5.89 Downloading dependency 202 of 303: python3-dev:i386=3.13.2-1 Downloading dependency 203 of 303: dpkg:i386=1.22.15 Downloading dependency 204 of 303: python3-jaraco.functools:i386=4.1.0-1 Downloading dependency 205 of 303: python3-jaraco.text:i386=4.0.0-1 Downloading dependency 206 of 303: intltool-debian:i386=0.35.0+20060710.6 Downloading dependency 207 of 303: python3-jinja2:i386=3.1.5-2 Downloading dependency 208 of 303: libunistring5:i386=1.3-1 Downloading dependency 209 of 303: libblosc1:i386=1.21.5+ds-1+b2 Downloading dependency 210 of 303: patch:i386=2.7.6-7 Downloading dependency 211 of 303: python3-jupyterlab-pygments:i386=0.2.2-3 Downloading dependency 212 of 303: python3.13:i386=3.13.2-1 Downloading dependency 213 of 303: libpam-runtime:i386=1.7.0-3 Downloading dependency 214 of 303: libjson-perl:i386=4.10000-1 Downloading dependency 215 of 303: liblbfgsb0:i386=3.0+dfsg.4-1+b2 Downloading dependency 216 of 303: cython3:i386=3.0.11+dfsg-2 Downloading dependency 217 of 303: python3-nbsphinx-link:i386=1.3.0-4 Downloading dependency 218 of 303: gcc-14:i386=14.2.0-17 Downloading dependency 219 of 303: libldap2:i386=2.6.9+dfsg-1 Downloading dependency 220 of 303: libatomic1:i386=14.2.0-17 Downloading dependency 221 of 303: python3-attr:i386=25.1.0-1 Downloading dependency 222 of 303: python3-zipp:i386=3.21.0-1 Downloading dependency 223 of 303: libnorm1t64:i386=1.5.9+dfsg-3.1+b2 Downloading dependency 224 of 303: python3-babel:i386=2.17.0-1 Downloading dependency 225 of 303: python3-jupyter-core:i386=5.7.2-5 Downloading dependency 226 of 303: python3-nbconvert:i386=7.16.6-1 Downloading dependency 227 of 303: python3-tables:i386=3.10.2-2 Downloading dependency 228 of 303: python3-sphinx:i386=8.1.3-5 Downloading dependency 229 of 303: sysvinit-utils:i386=3.14-1 Downloading dependency 230 of 303: python-tinycss2-common:i386=1.4.0-1 Downloading dependency 231 of 303: python3-mistune:i386=3.0.2-2 Downloading dependency 232 of 303: libgomp1:i386=14.2.0-17 Downloading dependency 233 of 303: autotools-dev:i386=20220109.1 Downloading dependency 234 of 303: libicu72:i386=72.1-6 Downloading dependency 235 of 303: libpython3.13:i386=3.13.2-1 Downloading dependency 236 of 303: debhelper:i386=13.24.1 Downloading dependency 237 of 303: python3-all-dev:i386=3.13.2-1 Downloading dependency 238 of 303: tar:i386=1.35+dfsg-3.1 Downloading dependency 239 of 303: python3-html5lib:i386=1.2-1 Downloading dependency 240 of 303: libbsd0:i386=0.12.2-2 Downloading dependency 241 of 303: automake:i386=1:1.17-3 Downloading dependency 242 of 303: hostname:i386=3.25 Downloading dependency 243 of 303: binutils-common:i386=2.44-2 Downloading dependency 244 of 303: python3-idna:i386=3.10-1 Downloading dependency 245 of 303: python3-nbformat:i386=5.9.1-1 Downloading dependency 246 of 303: libxxhash0:i386=0.8.3-2 Downloading dependency 247 of 303: python3-chardet:i386=5.2.0+dfsg-2 Downloading dependency 248 of 303: linux-libc-dev:i386=6.12.16-1 Downloading dependency 249 of 303: python3-bleach:i386=6.2.0-1 Downloading dependency 250 of 303: python3-jsonschema-specifications:i386=2023.12.1-2 Downloading dependency 251 of 303: groff-base:i386=1.23.0-7 Downloading dependency 252 of 303: bzip2:i386=1.0.8-6 Downloading dependency 253 of 303: python3-netcdf4:i386=1.7.2-1+b3 Downloading dependency 254 of 303: libpython3-all-dev:i386=3.13.2-1 Downloading dependency 255 of 303: python3-pandas:i386=2.2.3+dfsg-8 Downloading dependency 256 of 303: libbinutils:i386=2.44-2 Downloading dependency 257 of 303: libssl3t64:i386=3.4.1-1 Downloading dependency 258 of 303: cpp:i386=4:14.2.0-1 Downloading dependency 259 of 303: libpgm-5.3-0t64:i386=5.3.128~dfsg-2.1+b1 Downloading dependency 260 of 303: python3-inflect:i386=7.3.1-2 Downloading dependency 261 of 303: python-babel-localedata:i386=2.17.0-1Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python-babel-localedata all 2.17.0-1 [6050 kB] Fetched 6050 kB in 0s (118 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5kro3ver/python-babel-localedata_2.17.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main i386 build-essential i386 12.12 [4620 B] Fetched 4620 B in 0s (422 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3p47suck/build-essential_12.12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-tornado i386 6.4.2-1 [349 kB] Fetched 349 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn59lkz_8/python3-tornado_6.4.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgdbm-compat4t64 i386 1.24-2 [50.8 kB] Fetched 50.8 kB in 0s (4700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphmyd6kre/libgdbm-compat4t64_1.24-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libblkid1 i386 2.40.4-5 [185 kB] Fetched 185 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqd6c42z/libblkid1_2.40.4-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp7jqerfm/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 cpp-14 i386 14.2.0-17 [1280 B] Fetched 1280 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcyhj26mg/cpp-14_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libitm1 i386 14.2.0-17 [27.3 kB] Fetched 27.3 kB in 0s (2433 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_9ph4nv/libitm1_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcap2 i386 1:2.73-4 [28.3 kB] Fetched 28.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.73-4_i386.deb' to '/srv/rebuilderd/tmp/tmp8wvxo3_4/libcap2_2.73-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libreadline8t64 i386 8.2-6 [173 kB] Fetched 173 kB in 0s (14.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt1sfgtzu/libreadline8t64_8.2-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libcc1-0 i386 14.2.0-17 [44.9 kB] Fetched 44.9 kB in 0s (3923 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxa_cok3z/libcc1-0_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-numpy-dev i386 1:2.2.3+ds-2 [145 kB] Fetched 145 kB in 0s (11.1 MB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.2.3+ds-2_i386.deb' to '/srv/rebuilderd/tmp/tmptc25wxii/python3-numpy-dev_2.2.3+ds-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 man-db i386 2.13.0-1 [1428 kB] Fetched 1428 kB in 0s (80.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpadut9bng/man-db_2.13.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (763 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxt7150qh/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Fetched 9600 B in 0s (865 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpccpzj112/libkeyutils1_1.6.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-networkx all 3.2.1-5 [13.0 MB] Fetched 13.0 MB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6r3gcqe9/python3-networkx_3.2.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libexpat1-dev i386 2.6.4-1 [165 kB] Fetched 165 kB in 0s (11.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpestix_pk/libexpat1-dev_2.6.4-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libselinux1 i386 3.8-3 [88.0 kB] Fetched 88.0 kB in 0s (8549 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp18pmqkac/libselinux1_3.8-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libc-dev-bin i386 2.40-7 [57.2 kB] Fetched 57.2 kB in 0s (4838 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ikhza80/libc-dev-bin_2.40-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Fetched 2266 kB in 0s (87.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdprmqn9q/python3.13-minimal_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libaec0 i386 1.1.3-1+b1 [25.0 kB] Fetched 25.0 kB in 0s (2462 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw93ahh3l/libaec0_1.1.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Fetched 859 kB in 0s (55.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmbdphcts/libpython3.13-minimal_3.13.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 binutils-i686-linux-gnu i386 2.44-2 [1072 kB] Fetched 1072 kB in 0s (74.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl8rewwgq/binutils-i686-linux-gnu_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Fetched 69.2 kB in 0s (5912 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6t471ytv/libuchardet0_0.0.8-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 grep i386 3.11-4 [437 kB] Fetched 437 kB in 0s (28.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdqzva6bm/grep_3.11-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libhdf5-hl-310 i386 1.14.5+repack-3 [81.6 kB] Fetched 81.6 kB in 0s (7442 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zceyl00/libhdf5-hl-310_1.14.5+repack-3_i386.deb' Get:1 http://deb.debian.org/debian unstable/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Fetched 2210 kB in 0s (89.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx0qe05mx/fonts-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libudev1 i386 257.3-1 [153 kB] Fetched 153 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7xccmumw/libudev1_257.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libasan8 i386 14.2.0-17 [2606 kB] Fetched 2606 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr43n6sji/libasan8_14.2.0-17_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Fetched 146 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqcpkmgot/python3-pyparsing_3.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8+b1 [20.9 kB] Fetched 20.9 kB in 0s (1808 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdiprdpf/libsasl2-modules-db_2.1.28+dfsg1-8+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (1840 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9elhx6a8/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libtool all 2.5.4-3 [539 kB] Fetched 539 kB in 0s (36.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6yqelkw1/libtool_2.5.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Fetched 72.1 kB in 0s (6350 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphjax2083/python3-requests_2.32.3+dfsg-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Fetched 83.7 kB in 0s (6453 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu0_ewqb6/libk5crypto3_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Fetched 256 kB in 0s (20.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph3g_ge8l/libssh2-1t64_1.11.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Fetched 149 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvxsm2fha/libgssapi-krb5-2_1.21.3-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Fetched 222 kB in 0s (18.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcdlfqisn/python3-pkg-resources_75.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 m4 i386 1.4.19-5 [301 kB] Fetched 301 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvfaa9afn/m4_1.4.19-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 base-files i386 13.6 [72.8 kB] Fetched 72.8 kB in 0s (6800 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpezkpje2u/base-files_13.6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkoy5ighh/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250224T085051Z sid/main i386 python3-versioneer all 0.29-1 [43.0 kB] Fetched 43.0 kB in 0s (3537 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_cvawyc8/python3-versioneer_0.29-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250304T145039Z sid/main i386 libcurl4t64 i386 8.12.1-3 [415 kB] Fetched 415 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1rha8vag/libcurl4t64_8.12.1-3_i386.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmphfknuwnj/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: i386 is different from amd64 but can be executed natively I: using /srv/rebuilderd/tmp/mmdebstrap.s2LPFIb9MV as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.s2LPFIb9MV 127.0.0.1 - - [12/Mar/2026 14:11:37] code 404, message File not found 127.0.0.1 - - [12/Mar/2026 14:11:37] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:43585 ./ InRelease 127.0.0.1 - - [12/Mar/2026 14:11:37] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:43585 ./ Release [462 B] 127.0.0.1 - - [12/Mar/2026 14:11:37] code 404, message File not found 127.0.0.1 - - [12/Mar/2026 14:11:37] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:43585 ./ Release.gpg 127.0.0.1 - - [12/Mar/2026 14:11:37] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:43585 ./ Packages [378 kB] Fetched 379 kB in 0s (16.6 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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127.0.0.1 - - [12/Mar/2026 14:11:54] "GET /./python3-netcdf4_1.7.2-1%2bb3_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Mar/2026 14:11:54] "GET /./python3-pandas_2.2.3%2bdfsg-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Mar/2026 14:11:54] "GET /./python3-networkx_3.2.1-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Mar/2026 14:11:54] "GET /./python3-pyparsing_3.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Mar/2026 14:11:54] "GET /./python3-versioneer_0.29-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Mar/2026 14:11:54] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmphfknuwnj/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.s2LPFIb9MV Reading package lists... Building dependency tree... Reading state information... libpam0g is already the newest version (1.7.0-3). autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. python3-all is already the newest version (3.13.2-1). python3-all set to manually installed. libngtcp2-16 is already the newest version (1.9.1-1). libngtcp2-16 set to manually installed. coreutils is already the newest version (9.5-1). libkrb5support0 is already the newest version (1.21.3-4). libkrb5support0 set to manually installed. libjs-mathjax is already the newest version (2.7.9+dfsg-1). libjs-mathjax set to manually installed. libpython3.13-stdlib is already the newest version (3.13.2-1). libpython3.13-stdlib set to manually installed. openssl-provider-legacy is already the newest version (3.4.1-1). ncurses-base is already the newest version (6.5+20250216-1). python3-cftime is already the newest version (1.6.4-1+b3). python3-cftime set to manually installed. python3-webencodings is already the newest version (0.5.1-5). python3-webencodings set to manually installed. libsodium23 is already the newest version (1.0.18-1+b2). libsodium23 set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). g++-i686-linux-gnu is already the newest version (4:14.2.0-1). g++-i686-linux-gnu set to manually installed. python3-snowballstemmer is already the newest version (2.2.0-4). python3-snowballstemmer set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libsframe1 is already the newest version (2.44-2). libsframe1 set to manually installed. libstdc++-14-dev is already the newest version (14.2.0-17). libstdc++-14-dev set to manually installed. libctf-nobfd0 is already the newest version (2.44-2). libctf-nobfd0 set to manually installed. libhdf5-310 is already the newest version (1.14.5+repack-3). libhdf5-310 set to manually installed. python3-fastjsonschema is already the newest version (2.21.1-1). python3-fastjsonschema set to manually installed. bsdextrautils is already the newest version (2.40.4-5). bsdextrautils set to manually installed. python3-alabaster is already the newest version (0.7.16-0.1). python3-alabaster set to manually installed. python-tables-data is already the newest version (3.10.2-2). python-tables-data set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b1). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libmagic-mgc is already the newest version (1:5.45-3+b1). libmagic-mgc set to manually installed. libattr1 is already the newest version (1:2.5.2-3). libffi8 is already the newest version (3.4.7-1). libffi8 set to manually installed. liblapack3 is already the newest version (3.12.1-2). liblapack3 set to manually installed. python3-cpuinfo is already the newest version (9.0.0+git20221119-3). python3-cpuinfo set to manually installed. libnetcdf22 is already the newest version (1:4.9.3-1). libnetcdf22 set to manually installed. liblz4-1 is already the newest version (1.10.0-3). liblz4-1 set to manually installed. python3-imagesize is already the newest version (1.4.1-1). python3-imagesize set to manually installed. python3-certifi is already the newest version (2025.1.31+ds-1). python3-certifi set to manually installed. libtinfo6 is already the newest version (6.5+20250216-1). libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libctf0 is already the newest version (2.44-2). libctf0 set to manually installed. libpam-modules is already the newest version (1.7.0-3). po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libsz2 is already the newest version (1.1.3-1+b1). libsz2 set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. python3-jaraco.context is already the newest version (6.0.0-1). python3-jaraco.context set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.2+b1). libxml2 set to manually installed. libncursesw6 is already the newest version (6.5+20250216-1). libncursesw6 set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. python3-jupyter-client is already the newest version (8.6.3-2). python3-jupyter-client set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). libc6 is already the newest version (2.40-7). libperl5.40 is already the newest version (5.40.1-2). libperl5.40 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. python3-tinycss2 is already the newest version (1.4.0-1). python3-tinycss2 set to manually installed. cpp-i686-linux-gnu is already the newest version (4:14.2.0-1). cpp-i686-linux-gnu set to manually installed. diffutils is already the newest version (1:3.10-2). libc-bin is already the newest version (2.40-7). rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-8+b1). libsasl2-2 set to manually installed. ncurses-bin is already the newest version (6.5+20250216-1). sgml-base is already the newest version (1.31). sgml-base set to manually installed. sphinx-common is already the newest version (8.1.3-5). sphinx-common set to manually installed. libgcc-s1 is already the newest version (14.2.0-17). libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. python3-packaging is already the newest version (24.2-1). python3-packaging set to manually installed. libnghttp3-9 is already the newest version (1.6.0-2). libnghttp3-9 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). python3-nbsphinx is already the newest version (0.9.5+ds-1). python3-nbsphinx set to manually installed. python3-more-itertools is already the newest version (10.6.0-1). python3-more-itertools set to manually installed. libubsan1 is already the newest version (14.2.0-17). libubsan1 set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. media-types is already the newest version (12.0.0). media-types set to manually installed. python3-jsonschema is already the newest version (4.19.2-6). python3-jsonschema set to manually installed. docutils-common is already the newest version (0.21.2+dfsg-2). docutils-common set to manually installed. libcom-err2 is already the newest version (1.47.2-1). libcom-err2 set to manually installed. python3-urllib3 is already the newest version (2.3.0-1). python3-urllib3 set to manually installed. python3-platformdirs is already the newest version (4.3.6-1). python3-platformdirs set to manually installed. libmagic1t64 is already the newest version (1:5.45-3+b1). libmagic1t64 set to manually installed. libseccomp2 is already the newest version (2.5.5-2). libseccomp2 set to manually installed. netbase is already the newest version (6.4). netbase set to manually installed. libpython3-stdlib is already the newest version (3.13.2-1). libpython3-stdlib set to manually installed. libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libzstd1 is already the newest version (1.5.6+dfsg-2). libnghttp2-14 is already the newest version (1.64.0-1). libnghttp2-14 set to manually installed. perl-base is already the newest version (5.40.1-2). python3-minimal is already the newest version (3.13.2-1). python3-minimal set to manually installed. make is already the newest version (4.4.1-1). make set to manually installed. libsqlite3-0 is already the newest version (3.46.1-1). libsqlite3-0 set to manually installed. python3-cffi-backend is already the newest version (1.17.1-2+b1). python3-cffi-backend set to manually installed. python3-psutil is already the newest version (5.9.8-2). python3-psutil set to manually installed. sed is already the newest version (4.9-2). tzdata is already the newest version (2025a-2). tzdata set to manually installed. file is already the newest version (1:5.45-3+b1). file set to manually installed. gcc-14-i686-linux-gnu is already the newest version (14.2.0-17). gcc-14-i686-linux-gnu set to manually installed. python3-pygments is already the newest version (2.18.0+dfsg-2). python3-pygments set to manually installed. python3-roman is already the newest version (5.0-1). python3-roman set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. libquadmath0 is already the newest version (14.2.0-17). libquadmath0 set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. dh-python is already the newest version (6.20250108). dh-python set to manually installed. libstdc++6 is already the newest version (14.2.0-17). libstdc++6 set to manually installed. python3-typeguard is already the newest version (4.4.2-1). python3-typeguard set to manually installed. libblosc2-4 is already the newest version (2.16.0+ds-1). libblosc2-4 set to manually installed. python3-typing-extensions is already the newest version (4.12.2-2). python3-typing-extensions set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-2). perl-modules-5.40 set to manually installed. python3-decorator is already the newest version (5.1.1-5). python3-decorator set to manually installed. python3.13-dev is already the newest version (3.13.2-1). python3.13-dev set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. gcc-14-base is already the newest version (14.2.0-17). python3-pandocfilters is already the newest version (1.5.1-1). python3-pandocfilters set to manually installed. liblzma5 is already the newest version (5.6.3-1+b1). python3-docutils is already the newest version (0.21.2+dfsg-2). python3-docutils set to manually installed. gettext is already the newest version (0.23.1-1). gettext set to manually installed. dpkg-dev is already the newest version (1.22.15). dpkg-dev set to manually installed. findutils is already the newest version (4.10.0-3). libcrypt1 is already the newest version (1:4.4.38-1). libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. python3-numpy is already the newest version (1:2.2.3+ds-2). python3-numpy set to manually installed. libpam-modules-bin is already the newest version (1.7.0-3). libgprofng0 is already the newest version (2.44-2). libgprofng0 set to manually installed. libmpfr6 is already the newest version (4.2.1-1+b2). libmpfr6 set to manually installed. python3-setuptools is already the newest version (75.8.0-1). python3-setuptools set to manually installed. perl is already the newest version (5.40.1-2). perl set to manually installed. bash is already the newest version (5.2.37-1.1). libbz2-1.0 is already the newest version (1.0.8-6). cpp-14-i686-linux-gnu is already the newest version (14.2.0-17). cpp-14-i686-linux-gnu set to manually installed. openssl is already the newest version (3.4.1-1). openssl set to manually installed. libgnutls30t64 is already the newest version (3.8.9-2). libgnutls30t64 set to manually installed. bsdutils is already the newest version (1:2.40.4-5). libjs-sphinxdoc is already the newest version (8.1.3-5). libjs-sphinxdoc set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). libcurl3t64-gnutls is already the newest version (8.12.1-3). libcurl3t64-gnutls set to manually installed. g++-14-i686-linux-gnu is already the newest version (14.2.0-17). g++-14-i686-linux-gnu set to manually installed. python3-zmq is already the newest version (26.2.1-1). python3-zmq set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. python3-markupsafe is already the newest version (2.1.5-1+b2). python3-markupsafe set to manually installed. python3-pytz is already the newest version (2025.1-3). python3-pytz set to manually installed. libnettle8t64 is already the newest version (3.10.1-1). libnettle8t64 set to manually installed. python3-nbclient is already the newest version (0.8.0-2). python3-nbclient set to manually installed. python3-bs4 is already the newest version (4.13.3-1). python3-bs4 set to manually installed. libdebconfclient0 is already the newest version (0.277). python3-scipy is already the newest version (1.14.1-4). python3-scipy set to manually installed. base-passwd is already the newest version (3.6.6). libcap-ng0 is already the newest version (0.8.5-4). dash is already the newest version (0.5.12-12). mawk is already the newest version (1.3.4.20250131-1). binutils is already the newest version (2.44-2). binutils set to manually installed. libgcc-14-dev is already the newest version (14.2.0-17). libgcc-14-dev set to manually installed. libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3). libjs-underscore set to manually installed. libsnappy1v5 is already the newest version (1.2.1-1+b1). libsnappy1v5 set to manually installed. libdpkg-perl is already the newest version (1.22.15). libdpkg-perl set to manually installed. liblzo2-2 is already the newest version (2.10-3+b1). liblzo2-2 set to manually installed. ca-certificates is already the newest version (20241223). ca-certificates set to manually installed. libsystemd0 is already the newest version (257.3-1). xml-core is already the newest version (0.19). xml-core set to manually installed. python3-rpds-py is already the newest version (0.21.0-2). python3-rpds-py set to manually installed. python3-numexpr is already the newest version (2.10.2-1+b1). python3-numexpr set to manually installed. libc6-dev is already the newest version (2.40-7). libc6-dev set to manually installed. libdebhelper-perl is already the newest version (13.24.1). libdebhelper-perl set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). libzmq5 is already the newest version (4.3.5-1+b3). libzmq5 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). python3 is already the newest version (3.13.2-1). python3 set to manually installed. autoconf is already the newest version (2.72-3). autoconf set to manually installed. python3-dateutil is already the newest version (2.9.0-3). python3-dateutil set to manually installed. python3-referencing is already the newest version (0.35.1-2). python3-referencing set to manually installed. debianutils is already the newest version (5.21). g++-14 is already the newest version (14.2.0-17). g++-14 set to manually installed. libpython3.13-dev is already the newest version (3.13.2-1). libpython3.13-dev set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. gzip is already the newest version (1.13-1). python3-traitlets is already the newest version (5.14.3+really5.14.3-1). python3-traitlets set to manually installed. libkrb5-3 is already the newest version (1.21.3-4). libkrb5-3 set to manually installed. libidn2-0 is already the newest version (2.3.7-2+b1). libidn2-0 set to manually installed. libpython3-dev is already the newest version (3.13.2-1). libpython3-dev set to manually installed. libuuid1 is already the newest version (2.40.4-5). libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. python3-pandas-lib is already the newest version (2.2.3+dfsg-8). python3-pandas-lib set to manually installed. xz-utils is already the newest version (5.6.3-1+b1). xz-utils set to manually installed. python3-gsd is already the newest version (3.4.2-2). python3-gsd set to manually installed. gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.9.1-1). libngtcp2-crypto-gnutls8 set to manually installed. python3-defusedxml is already the newest version (0.7.1-3). python3-defusedxml set to manually installed. libmount1 is already the newest version (2.40.4-5). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. libblas3 is already the newest version (3.12.1-2). libblas3 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b6). libbrotli1 set to manually installed. python3-tables-lib is already the newest version (3.10.2-2). python3-tables-lib set to manually installed. python3-tz is already the newest version (2025.1-3). python3-tz set to manually installed. gcc-i686-linux-gnu is already the newest version (4:14.2.0-1). gcc-i686-linux-gnu set to manually installed. util-linux is already the newest version (2.40.4-5). libaudit-common is already the newest version (1:4.0.2-2). libsmartcols1 is already the newest version (2.40.4-5). python3-charset-normalizer is already the newest version (3.4.1-1). python3-charset-normalizer set to manually installed. libexpat1 is already the newest version (2.6.4-1). libexpat1 set to manually installed. python3-soupsieve is already the newest version (2.6-1). python3-soupsieve set to manually installed. libgfortran5 is already the newest version (14.2.0-17). libgfortran5 set to manually installed. debconf is already the newest version (1.5.89). python3-dev is already the newest version (3.13.2-1). python3-dev set to manually installed. dpkg is already the newest version (1.22.15). python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. python3-jinja2 is already the newest version (3.1.5-2). python3-jinja2 set to manually installed. libunistring5 is already the newest version (1.3-1). libunistring5 set to manually installed. libblosc1 is already the newest version (1.21.5+ds-1+b2). libblosc1 set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. python3-jupyterlab-pygments is already the newest version (0.2.2-3). python3-jupyterlab-pygments set to manually installed. python3.13 is already the newest version (3.13.2-1). python3.13 set to manually installed. libpam-runtime is already the newest version (1.7.0-3). libjson-perl is already the newest version (4.10000-1). libjson-perl set to manually installed. liblbfgsb0 is already the newest version (3.0+dfsg.4-1+b2). liblbfgsb0 set to manually installed. cython3 is already the newest version (3.0.11+dfsg-2). cython3 set to manually installed. python3-nbsphinx-link is already the newest version (1.3.0-4). python3-nbsphinx-link set to manually installed. gcc-14 is already the newest version (14.2.0-17). gcc-14 set to manually installed. libldap2 is already the newest version (2.6.9+dfsg-1). libldap2 set to manually installed. libatomic1 is already the newest version (14.2.0-17). libatomic1 set to manually installed. python3-attr is already the newest version (25.1.0-1). python3-attr set to manually installed. python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. libnorm1t64 is already the newest version (1.5.9+dfsg-3.1+b2). libnorm1t64 set to manually installed. python3-babel is already the newest version (2.17.0-1). python3-babel set to manually installed. python3-jupyter-core is already the newest version (5.7.2-5). python3-jupyter-core set to manually installed. python3-nbconvert is already the newest version (7.16.6-1). python3-nbconvert set to manually installed. python3-tables is already the newest version (3.10.2-2). python3-tables set to manually installed. python3-sphinx is already the newest version (8.1.3-5). python3-sphinx set to manually installed. sysvinit-utils is already the newest version (3.14-1). python-tinycss2-common is already the newest version (1.4.0-1). python-tinycss2-common set to manually installed. python3-mistune is already the newest version (3.0.2-2). python3-mistune set to manually installed. libgomp1 is already the newest version (14.2.0-17). libgomp1 set to manually installed. autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. libicu72 is already the newest version (72.1-6). libicu72 set to manually installed. libpython3.13 is already the newest version (3.13.2-1). libpython3.13 set to manually installed. debhelper is already the newest version (13.24.1). debhelper set to manually installed. python3-all-dev is already the newest version (3.13.2-1). python3-all-dev set to manually installed. tar is already the newest version (1.35+dfsg-3.1). python3-html5lib is already the newest version (1.2-1). python3-html5lib set to manually installed. libbsd0 is already the newest version (0.12.2-2). libbsd0 set to manually installed. automake is already the newest version (1:1.17-3). automake set to manually installed. hostname is already the newest version (3.25). binutils-common is already the newest version (2.44-2). binutils-common set to manually installed. python3-idna is already the newest version (3.10-1). python3-idna set to manually installed. python3-nbformat is already the newest version (5.9.1-1). python3-nbformat set to manually installed. libxxhash0 is already the newest version (0.8.3-2). libxxhash0 set to manually installed. python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. linux-libc-dev is already the newest version (6.12.16-1). linux-libc-dev set to manually installed. python3-bleach is already the newest version (6.2.0-1). python3-bleach set to manually installed. python3-jsonschema-specifications is already the newest version (2023.12.1-2). python3-jsonschema-specifications set to manually installed. groff-base is already the newest version (1.23.0-7). groff-base set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. python3-netcdf4 is already the newest version (1.7.2-1+b3). python3-netcdf4 set to manually installed. libpython3-all-dev is already the newest version (3.13.2-1). libpython3-all-dev set to manually installed. python3-pandas is already the newest version (2.2.3+dfsg-8). python3-pandas set to manually installed. libbinutils is already the newest version (2.44-2). libbinutils set to manually installed. libssl3t64 is already the newest version (3.4.1-1). cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libpgm-5.3-0t64 is already the newest version (5.3.128~dfsg-2.1+b1). libpgm-5.3-0t64 set to manually installed. python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. python-babel-localedata is already the newest version (2.17.0-1). python-babel-localedata set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. python3-tornado is already the newest version (6.4.2-1). python3-tornado set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. libblkid1 is already the newest version (2.40.4-5). init-system-helpers is already the newest version (1.68). cpp-14 is already the newest version (14.2.0-17). cpp-14 set to manually installed. libitm1 is already the newest version (14.2.0-17). libitm1 set to manually installed. libcap2 is already the newest version (1:2.73-4). libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. libcc1-0 is already the newest version (14.2.0-17). libcc1-0 set to manually installed. python3-numpy-dev is already the newest version (1:2.2.3+ds-2). python3-numpy-dev set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. libkeyutils1 is already the newest version (1.6.3-4). libkeyutils1 set to manually installed. python3-networkx is already the newest version (3.2.1-5). python3-networkx set to manually installed. libexpat1-dev is already the newest version (2.6.4-1). libexpat1-dev set to manually installed. libselinux1 is already the newest version (3.8-3). libc-dev-bin is already the newest version (2.40-7). libc-dev-bin set to manually installed. python3.13-minimal is already the newest version (3.13.2-1). python3.13-minimal set to manually installed. libaec0 is already the newest version (1.1.3-1+b1). libaec0 set to manually installed. libpython3.13-minimal is already the newest version (3.13.2-1). libpython3.13-minimal set to manually installed. binutils-i686-linux-gnu is already the newest version (2.44-2). binutils-i686-linux-gnu set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. grep is already the newest version (3.11-4). libhdf5-hl-310 is already the newest version (1.14.5+repack-3). libhdf5-hl-310 set to manually installed. fonts-mathjax is already the newest version (2.7.9+dfsg-1). fonts-mathjax set to manually installed. libudev1 is already the newest version (257.3-1). libasan8 is already the newest version (14.2.0-17). libasan8 set to manually installed. python3-pyparsing is already the newest version (3.1.2-1). python3-pyparsing set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-8+b1). libsasl2-modules-db set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. libtool is already the newest version (2.5.4-3). libtool set to manually installed. python3-requests is already the newest version (2.32.3+dfsg-4). python3-requests set to manually installed. libk5crypto3 is already the newest version (1.21.3-4). libk5crypto3 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-4). libgssapi-krb5-2 set to manually installed. python3-pkg-resources is already the newest version (75.8.0-1). python3-pkg-resources set to manually installed. m4 is already the newest version (1.4.19-5). m4 set to manually installed. base-files is already the newest version (13.6). libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1). libjs-jquery set to manually installed. python3-versioneer is already the newest version (0.29-1). python3-versioneer set to manually installed. libcurl4t64 is already the newest version (8.12.1-3). libcurl4t64 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.s2LPFIb9MV (Reading database ... 34175 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.s2LPFIb9MV I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.s2LPFIb9MV I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.s2LPFIb9MV... I: success in 153.8086 seconds Downloading dependency 262 of 303: build-essential:i386=12.12 Downloading dependency 263 of 303: python3-tornado:i386=6.4.2-1 Downloading dependency 264 of 303: libgdbm-compat4t64:i386=1.24-2 Downloading dependency 265 of 303: libblkid1:i386=2.40.4-5 Downloading dependency 266 of 303: init-system-helpers:i386=1.68 Downloading dependency 267 of 303: cpp-14:i386=14.2.0-17 Downloading dependency 268 of 303: libitm1:i386=14.2.0-17 Downloading dependency 269 of 303: libcap2:i386=1:2.73-4 Downloading dependency 270 of 303: libreadline8t64:i386=8.2-6 Downloading dependency 271 of 303: libcc1-0:i386=14.2.0-17 Downloading dependency 272 of 303: python3-numpy-dev:i386=1:2.2.3+ds-2 Downloading dependency 273 of 303: man-db:i386=2.13.0-1 Downloading dependency 274 of 303: dh-strip-nondeterminism:i386=1.14.1-2 Downloading dependency 275 of 303: libkeyutils1:i386=1.6.3-4 Downloading dependency 276 of 303: python3-networkx:i386=3.2.1-5 Downloading dependency 277 of 303: libexpat1-dev:i386=2.6.4-1 Downloading dependency 278 of 303: libselinux1:i386=3.8-3 Downloading dependency 279 of 303: libc-dev-bin:i386=2.40-7 Downloading dependency 280 of 303: python3.13-minimal:i386=3.13.2-1 Downloading dependency 281 of 303: libaec0:i386=1.1.3-1+b1 Downloading dependency 282 of 303: libpython3.13-minimal:i386=3.13.2-1 Downloading dependency 283 of 303: binutils-i686-linux-gnu:i386=2.44-2 Downloading dependency 284 of 303: libuchardet0:i386=0.0.8-1+b2 Downloading dependency 285 of 303: grep:i386=3.11-4 Downloading dependency 286 of 303: libhdf5-hl-310:i386=1.14.5+repack-3 Downloading dependency 287 of 303: fonts-mathjax:i386=2.7.9+dfsg-1 Downloading dependency 288 of 303: libudev1:i386=257.3-1 Downloading dependency 289 of 303: libasan8:i386=14.2.0-17 Downloading dependency 290 of 303: python3-pyparsing:i386=3.1.2-1 Downloading dependency 291 of 303: libsasl2-modules-db:i386=2.1.28+dfsg1-8+b1 Downloading dependency 292 of 303: libfile-stripnondeterminism-perl:i386=1.14.1-2 Downloading dependency 293 of 303: libtool:i386=2.5.4-3 Downloading dependency 294 of 303: python3-requests:i386=2.32.3+dfsg-4 Downloading dependency 295 of 303: libk5crypto3:i386=1.21.3-4 Downloading dependency 296 of 303: libssh2-1t64:i386=1.11.1-1 Downloading dependency 297 of 303: libgssapi-krb5-2:i386=1.21.3-4 Downloading dependency 298 of 303: python3-pkg-resources:i386=75.8.0-1 Downloading dependency 299 of 303: m4:i386=1.4.19-5 Downloading dependency 300 of 303: base-files:i386=13.6 Downloading dependency 301 of 303: libjs-jquery:i386=3.6.1+dfsg+~3.5.14-1 Downloading dependency 302 of 303: python3-versioneer:i386=0.29-1 Downloading dependency 303 of 303: libcurl4t64:i386=8.12.1-3 env --chdir=/srv/rebuilderd/tmp/rebuilderdRMQvC0/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1740582505 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildplobS_/debrebuild.sbuildrc.jSHoPPM72M8l sbuild --build=i386 --host=i386 --no-source --arch-any --no-arch-all --binNMU-changelog= mdtraj (1.10.3-2+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for i386; no source changes. * Rebuild with Python 3.13 only -- all / amd64 / i386 Build Daemon (x86-conova-02) Wed, 26 Feb 2025 15:08:25 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildplobS_/debrebuild.tar.2dSwje2v1vJk --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mdtraj-1.10.3 /srv/rebuilderd/tmp/rebuilderdRMQvC0/inputs/mdtraj_1.10.3-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on infom07-amd64 +==============================================================================+ | mdtraj 1.10.3-2+b1 (i386) Thu, 12 Mar 2026 14:14:11 +0000 | +==============================================================================+ Package: mdtraj Version: 1.10.3-2+b1 Source Version: 1.10.3-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildplobS_/debrebuild.tar.2dSwje2v1vJk to /srv/rebuilderd/tmp/tmp.sbuild.ya8AtPvRsE... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Thu, 12 Mar 2026 14:14:19 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdRMQvC0/inputs/mdtraj_1.10.3-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdRMQvC0/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 12 Mar 2026 14:14:21 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy, python3-scipy, python3-nbsphinx, python3-nbsphinx-link, python3-netcdf4, python3-networkx, python3-pandas, python3-pyparsing, python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy, python3-scipy, python3-nbsphinx, python3-nbsphinx-link, python3-netcdf4, python3-networkx, python3-pandas, python3-pyparsing, python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-p2vkah/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Thu, 12 Mar 2026 14:14:25 +0000 | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any-amd64 arm64 i386 all) +------------------------------------------------------------------------------+ | Build environment Thu, 12 Mar 2026 14:14:26 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.73+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.73-1 (2026-02-17) amd64 (x86_64) Toolchain package versions: binutils_2.44-2 dpkg-dev_1.22.15 g++-14_14.2.0-17 gcc-14_14.2.0-17 libc6-dev_2.40-7 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 linux-libc-dev_6.12.16-1 Package versions: autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1.1 binutils_2.44-2 binutils-common_2.44-2 binutils-i686-linux-gnu_2.44-2 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20241223 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-17 cpp-14-i686-linux-gnu_14.2.0-17 cpp-i686-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-2 dash_0.5.12-12 debconf_1.5.89 debhelper_13.24.1 debianutils_5.21 dh-autoreconf_20 dh-python_6.20250108 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 docutils-common_0.21.2+dfsg-2 dpkg_1.22.15 dpkg-dev_1.22.15 dwz_0.15-1+b1 file_1:5.45-3+b1 findutils_4.10.0-3 fonts-mathjax_2.7.9+dfsg-1 g++_4:14.2.0-1 g++-14_14.2.0-17 g++-14-i686-linux-gnu_14.2.0-17 g++-i686-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-17 gcc-14-base_14.2.0-17 gcc-14-i686-linux-gnu_14.2.0-17 gcc-i686-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 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python3-dev_3.13.2-1 python3-docutils_0.21.2+dfsg-2 python3-fastjsonschema_2.21.1-1 python3-gsd_3.4.2-2 python3-html5lib_1.2-1 python3-idna_3.10-1 python3-imagesize_1.4.1-1 python3-inflect_7.3.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-jinja2_3.1.5-2 python3-jsonschema_4.19.2-6 python3-jsonschema-specifications_2023.12.1-2 python3-jupyter-client_8.6.3-2 python3-jupyter-core_5.7.2-5 python3-jupyterlab-pygments_0.2.2-3 python3-markupsafe_2.1.5-1+b2 python3-minimal_3.13.2-1 python3-mistune_3.0.2-2 python3-more-itertools_10.6.0-1 python3-nbclient_0.8.0-2 python3-nbconvert_7.16.6-1 python3-nbformat_5.9.1-1 python3-nbsphinx_0.9.5+ds-1 python3-nbsphinx-link_1.3.0-4 python3-netcdf4_1.7.2-1+b3 python3-networkx_3.2.1-5 python3-numexpr_2.10.2-1+b1 python3-numpy_1:2.2.3+ds-2 python3-numpy-dev_1:2.2.3+ds-2 python3-packaging_24.2-1 python3-pandas_2.2.3+dfsg-8 python3-pandas-lib_2.2.3+dfsg-8 python3-pandocfilters_1.5.1-1 python3-pkg-resources_75.8.0-1 python3-platformdirs_4.3.6-1 python3-psutil_5.9.8-2 python3-pygments_2.18.0+dfsg-2 python3-pyparsing_3.1.2-1 python3-pytz_2025.1-3 python3-referencing_0.35.1-2 python3-requests_2.32.3+dfsg-4 python3-roman_5.0-1 python3-rpds-py_0.21.0-2 python3-scipy_1.14.1-4 python3-setuptools_75.8.0-1 python3-snowballstemmer_2.2.0-4 python3-soupsieve_2.6-1 python3-sphinx_8.1.3-5 python3-tables_3.10.2-2 python3-tables-lib_3.10.2-2 python3-tinycss2_1.4.0-1 python3-tornado_6.4.2-1 python3-traitlets_5.14.3+really5.14.3-1 python3-typeguard_4.4.2-1 python3-typing-extensions_4.12.2-2 python3-tz_2025.1-3 python3-urllib3_2.3.0-1 python3-versioneer_0.29-1 python3-webencodings_0.5.1-5 python3-zipp_3.21.0-1 python3-zmq_26.2.1-1 python3.13_3.13.2-1 python3.13-dev_3.13.2-1 python3.13-minimal_3.13.2-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sed_4.9-2 sensible-utils_0.0.24 sgml-base_1.31 sphinx-common_8.1.3-5 sysvinit-utils_3.14-1 tar_1.35+dfsg-3.1 tzdata_2025a-2 util-linux_2.40.4-5 xml-core_0.19 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Thu, 12 Mar 2026 14:14:26 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mdtraj Binary: python3-mdtraj, python-mdtraj-doc Architecture: any-amd64 arm64 i386 all Version: 1.10.3-2 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://mdtraj.org/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/debichem-team/mdtraj Vcs-Git: https://salsa.debian.org/debichem-team/mdtraj.git Testsuite: autopkgtest Testsuite-Triggers: python3-gsd, python3-ipykernel, python3-jupyter-client, python3-matplotlib, python3-nbformat, python3-netcdf4, python3-pandas, python3-pytest, python3-sklearn Build-Depends: debhelper-compat (= 13), 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verify inline signature for ./mdtraj_1.10.3-2.dsc: unsupported subcommand dpkg-source: info: extracting mdtraj in /build/reproducible-path/mdtraj-1.10.3 dpkg-source: info: unpacking mdtraj_1.10.3.orig.tar.gz dpkg-source: info: unpacking mdtraj_1.10.3-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying docs_use_local_mathjax.patch dpkg-source: info: applying build_dir_pybuild.patch dpkg-source: info: applying python_hashbang.patch dpkg-source: info: applying 32bit_skip_image_molecule.patch dpkg-source: info: applying test_relax_tol.patch dpkg-source: info: applying rename-mdconvert-mdtraj.patch dpkg-source: info: applying drop_notebook_in_docs.patch dpkg-source: info: applying test_increase_timeout.patch dpkg-source: info: applying revert_flaky_PR1972.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 1.10.3-2+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1740582505 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mdtraj dpkg-buildpackage: info: source version 1.10.3-2+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-02) dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from mdtraj-1.10.3/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py clean Using built-in specs. COLLECT_GCC=/usr/bin/i686-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) /build/reproducible-path/mdtraj-1.10.3/basesetup.py:483: UserWarning: Unrecognized setuptools command ('clean'), proceeding with generating Cython sources and expanding templates warnings.warn( warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx running clean removing '/build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mdtraj-1.10.3' for f in mdtraj/formats/binpos/binpos.c \ mdtraj/formats/dcd/dcd.c \ mdtraj/formats/dtr/dtr.cpp \ mdtraj/formats/tng/tng.c \ mdtraj/formats/xtc/trr.c \ mdtraj/formats/xtc/xtc.c \ mdtraj/geometry/drid.cpp \ mdtraj/geometry/neighborlist.cpp \ mdtraj/geometry/neighbors.cpp \ mdtraj/geometry/src/_geometry.cpp \ mdtraj/rmsd/_lprmsd.cpp \ mdtraj/rmsd/_rmsd.cpp \ mdtraj/version.py; \ do rm -f $f; done rm -rf mdtraj/core/lib rm -rf docs/api/generated rm -rf __pycache__ .pybuild find . -name "lib*.a" -delete make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.10.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-mdtraj.substvars debian/python-mdtraj-doc.substvars debian/files rm -fr -- debian/python3-mdtraj/ debian/tmp/ debian/python-mdtraj-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py config Using built-in specs. COLLECT_GCC=/usr/bin/i686-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) /build/reproducible-path/mdtraj-1.10.3/basesetup.py:483: UserWarning: Unrecognized setuptools command ('config'), proceeding with generating Cython sources and expanding templates warnings.warn( warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx running config dh_auto_build -a -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild base:311: /usr/bin/python3 setup.py build Using built-in specs. COLLECT_GCC=/usr/bin/i686-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx running build running build_py creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/io.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/pdbx.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data UPDATING /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py set /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py to '1.10.3' running build_ext building 'mdtraj.formats.xtc' extension creating build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_xtc.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/xtc.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/xtc.c:1263: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/xtc.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.trr' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_trr.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/trr.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/trr.c:1265: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/trr.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.dcd' extension creating build/temp.linux-i686-cpython-313/mdtraj/formats/dcd creating build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/dcd.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/dcd.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dcd/dcd.c:1260: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/src/dcdplugin.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/dcd.o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.dtr' extension creating build/temp.linux-i686-cpython-313/mdtraj/formats/dtr creating build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/dtr.cpp -o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/dtr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dtr/dtr.cpp:1279: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/src/dtrplugin.cxx -o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dtr/src/dtrplugin.cxx: In member function ‘bool desres::molfile::Timekeys::init(const std::string&)’: mdtraj/formats/dtr/src/dtrplugin.cxx:486:64: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 486 | fprintf(stderr, "non-constant framesize at frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx:487:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %lld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:487:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %lld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:494:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 494 | "non-constant time interval at frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx:499:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 499 | fprintf(stderr, "unexpected offset for frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘int handle_wrapped_v2({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)’: mdtraj/formats/dtr/src/dtrplugin.cxx:1301:69: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1301 | fprintf(stderr, "ERROR, Expected %d elements in POSITION; got %ld\n", | ~~^ | | | long int | %lld 1302 | 3*natoms, pos.count); | ~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:1310:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1310 | fprintf(stderr, "ERROR, Expected %d elements in VELOCITY; got %ld\n", | ~~^ | | | long int | %lld 1311 | 3*natoms, vel.count); | ~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)’: mdtraj/formats/dtr/src/dtrplugin.cxx:1572:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1572 | fprintf(stderr, "VELOCITY field has %ld values; expected %d\n", | ~~^ | | | long int | %lld 1573 | velblob.count, 3*natoms); | ~~~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:706:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 706 | sprintf(sub, "%03x/", i); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:706:22: note: directive argument in the range [0, 2147483646] 706 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from mdtraj/formats/dtr/include/molfile_plugin.h:35, from mdtraj/formats/dtr/include/dtrplugin.hxx:46, from mdtraj/formats/dtr/src/dtrplugin.cxx:42: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:706:9: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:714:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(subsub, "%03x", j); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:714:29: note: directive argument in the range [0, 2147483646] 714 | sprintf(subsub, "%03x", j); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:714:13: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:667:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 667 | sprintf(answer, "%03x/", d1); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:667:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:665:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function ‘std::string DDreldir(const std::string&, int, int)’, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: mdtraj/formats/dtr/src/dtrplugin.cxx:665:29: note: directive argument in the range [0, 2147483646] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:665:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/dtr.o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so building 'mdtraj._rmsd' extension creating build/temp.linux-i686-cpython-313/mdtraj/rmsd creating build/temp.linux-i686-cpython-313/mdtraj/rmsd/src i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/rmsd/_rmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so building 'mdtraj._lprmsd' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/_lprmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_lprmsd.cpp:1307: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/Munkres.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/fancy_index.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/rmsd/_lprmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/Munkres.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/fancy_index.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so building 'mdtraj.core.lib.libtheobald' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -msse2 -mssse3 -O3 -funroll-loops --std=c++11 i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -msse2 -mssse3 -O3 -funroll-loops --std=c++11 i686-linux-gnu-gcc-ar rcs /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o building 'mdtraj.geometry._geometry' extension creating build/temp.linux-i686-cpython-313/mdtraj/geometry/src i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/_geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/geometry/src/_geometry.cpp:1289: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dssp.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/sasa.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/src/_geometry.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dssp.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/geometry.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/sasa.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.drid' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/drid.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/drid.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dridkernels.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/moments.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/drid.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dridkernels.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/moments.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.neighbors' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/neighbors.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighbors.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.neighborlist' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/neighborlist.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighborlist.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so dh_auto_test -a -O--buildsystem=pybuild pybuild --test -i python{version} -p 3.13 I: pybuild base:311: cd /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN rm -fr -- /tmp/dh-xdg-rundir-v61EMpLA create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-mdtraj.substvars rm -fr -- debian/.debhelper/generated/python3-mdtraj/ debian/python3-mdtraj/ debian/tmp/ dh_auto_install -a -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/mdtraj-1.10.3/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/mdtraj-1.10.3/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj Using built-in specs. COLLECT_GCC=/usr/bin/i686-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py set /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py to '1.10.3' running build_ext building 'mdtraj.formats.xtc' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_xtc.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/xtc.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/xtc.c:1263: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/xtc.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.trr' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_trr.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/trr.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/trr.c:1265: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/trr.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.dcd' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/dcd.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/dcd.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dcd/dcd.c:1260: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/src/dcdplugin.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/dcd.o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.dtr' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/dtr.cpp -o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/dtr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dtr/dtr.cpp:1279: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/src/dtrplugin.cxx -o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dtr/src/dtrplugin.cxx: In member function ‘bool desres::molfile::Timekeys::init(const std::string&)’: mdtraj/formats/dtr/src/dtrplugin.cxx:486:64: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 486 | fprintf(stderr, "non-constant framesize at frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx:487:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %lld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:487:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %lld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:494:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 494 | "non-constant time interval at frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx:499:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 499 | fprintf(stderr, "unexpected offset for frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘int handle_wrapped_v2({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)’: mdtraj/formats/dtr/src/dtrplugin.cxx:1301:69: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1301 | fprintf(stderr, "ERROR, Expected %d elements in POSITION; got %ld\n", | ~~^ | | | long int | %lld 1302 | 3*natoms, pos.count); | ~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:1310:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1310 | fprintf(stderr, "ERROR, Expected %d elements in VELOCITY; got %ld\n", | ~~^ | | | long int | %lld 1311 | 3*natoms, vel.count); | ~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)’: mdtraj/formats/dtr/src/dtrplugin.cxx:1572:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1572 | fprintf(stderr, "VELOCITY field has %ld values; expected %d\n", | ~~^ | | | long int | %lld 1573 | velblob.count, 3*natoms); | ~~~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:706:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 706 | sprintf(sub, "%03x/", i); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:706:22: note: directive argument in the range [0, 2147483646] 706 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from mdtraj/formats/dtr/include/molfile_plugin.h:35, from mdtraj/formats/dtr/include/dtrplugin.hxx:46, from mdtraj/formats/dtr/src/dtrplugin.cxx:42: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:706:9: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:714:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(subsub, "%03x", j); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:714:29: note: directive argument in the range [0, 2147483646] 714 | sprintf(subsub, "%03x", j); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:714:13: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:667:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 667 | sprintf(answer, "%03x/", d1); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:667:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:665:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function ‘std::string DDreldir(const std::string&, int, int)’, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: mdtraj/formats/dtr/src/dtrplugin.cxx:665:29: note: directive argument in the range [0, 2147483646] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:665:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/dtr.o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so building 'mdtraj._rmsd' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/rmsd/_rmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so building 'mdtraj._lprmsd' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/_lprmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_lprmsd.cpp:1307: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/Munkres.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/fancy_index.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/rmsd/_lprmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/Munkres.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/fancy_index.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry._geometry' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/_geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/geometry/src/_geometry.cpp:1289: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dssp.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/sasa.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/src/_geometry.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dssp.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/geometry.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/sasa.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.drid' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/drid.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/drid.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dridkernels.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/moments.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/drid.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dridkernels.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/moments.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.neighbors' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/neighbors.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighbors.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.neighborlist' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.10.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/neighborlist.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighborlist.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so running install_lib creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/io.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/basereporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/dcdreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/xtcreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/netcdfreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/hdf5reporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/contact.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/hbond.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/order.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/thermodynamic_properties.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/angle.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dihedral.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rg.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/shape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/sasa.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_operators.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/mymatrix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/quantity.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/basedimension.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_definitions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/prefix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/baseunit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/standard_dimensions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/validation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/rotation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/zipped.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/delay_import.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/singleton.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/contextmanagers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/unitcell.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/shift_wrappers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/scalar_couplings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/testing.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docstrings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docscrape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbstructure.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lammpstrj.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/prmtop.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/pdbx.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gsd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lh5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hoomdxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mol2.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/registry.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mdcrd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/netcdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/arc.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/psf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hdf5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/amberrst.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/xyzfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/openmmxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gro.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/theobald_rmsd.h -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/center.h -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core creating /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/selection.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/element.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/topology.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/residue_names.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/trajectory.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.10.3/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/xtcreporter.py to xtcreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/dcdreporter.py to dcdreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/hdf5reporter.py to hdf5reporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/netcdfreporter.py to netcdfreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/basereporter.py to basereporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dssp.py to dssp.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/thermodynamic_properties.py to thermodynamic_properties.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/angle.py to angle.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rdf.py to rdf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/order.py to order.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/internal.py to internal.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rg.py to rg.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/shape.py to shape.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/contact.py to contact.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/sasa.py to sasa.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dihedral.py to dihedral.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/hbond.py to hbond.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/delay_import.py to delay_import.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unitcell.py to unitcell.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_definitions.py to unit_definitions.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit.py to unit.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/doctests.py to doctests.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/quantity.py to quantity.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/mymatrix.py to mymatrix.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_operators.py to unit_operators.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/prefix.py to prefix.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/basedimension.py to basedimension.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_math.py to unit_math.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/baseunit.py to baseunit.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/standard_dimensions.py to standard_dimensions.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/zipped.py to zipped.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/singleton.py to singleton.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/contextmanagers.py to contextmanagers.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/validation.py to validation.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/rotation.py to rotation.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/scalar_couplings.py to scalar_couplings.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/shift_wrappers.py to shift_wrappers.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdinspect.py to mdinspect.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdconvert.py to mdconvert.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/testing.py to testing.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docstrings.py to docstrings.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docscrape.py to docscrape.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/arc.py to arc.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/xyzfile.py to xyzfile.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/openmmxml.py to openmmxml.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gro.py to gro.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lammpstrj.py to lammpstrj.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hoomdxml.py to hoomdxml.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mdcrd.py to mdcrd.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbstructure.py to pdbstructure.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/prmtop.py to prmtop.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/psf.py to psf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/amberrst.py to amberrst.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/registry.py to registry.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gsd.py to gsd.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hdf5.py to hdf5.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx.py to pdbx.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/netcdf.py to netcdf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mol2.py to mol2.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lh5.py to lh5.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/trajectory.py to trajectory.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/element.py to element.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/topology.py to topology.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/selection.py to selection.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/residue_names.py to residue_names.cpython-313.pyc running install_egg_info running egg_info creating mdtraj.egg-info writing mdtraj.egg-info/PKG-INFO writing dependency_links to mdtraj.egg-info/dependency_links.txt writing entry points to mdtraj.egg-info/entry_points.txt writing requirements to mdtraj.egg-info/requires.txt writing top-level names to mdtraj.egg-info/top_level.txt writing manifest file 'mdtraj.egg-info/SOURCES.txt' dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'mdtraj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching '__pycache__' no previously-included directories found matching '*.pyc' adding license file 'LICENSE' writing manifest file 'mdtraj.egg-info/SOURCES.txt' Copying mdtraj.egg-info to /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj-1.10.3.egg-info Skipping SOURCES.txt running install_scripts Installing mdconvert-mdtraj script to /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/bin Installing mdinspect script to /build/reproducible-path/mdtraj-1.10.3/debian/python3-mdtraj/usr/bin dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/copyright debian/python3-mdtraj/usr/share/doc/python3-mdtraj/copyright dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.trimmed debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.binnmu debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian.i386 dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/man/man1/ install -p -m0644 ./debian/mdconvert-mdtraj.1 debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 install -m0755 -d debian/python3-mdtraj/usr/share/man/man1/ install -p -m0644 ./debian/mdinspect.1 debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 mv debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 mv debian/python3-mdtraj/usr/share/man/man1/mdinspect.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:174: source=mdtraj, binary packages=['python3-mdtraj'] D: dh_python3 dh_python3:205: processing package python3-mdtraj... D: dh_python3 fs:50: moving files from debian/python3-mdtraj/usr/lib/python3.13/dist-packages to debian/python3-mdtraj/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-mdtraj details = {'requires.txt': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.10.3.egg-info/requires.txt'}, 'egg-info': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.10.3.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-mdtraj D: dh_python3 pydist:175: trying to find dependency for netCDF4 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for numpy<3,>=1.25.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for packaging (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pyparsing (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for scipy (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-numpy', 'python3-scipy', 'python3 (>= 3.13~)', 'python3-netcdf4', 'python3:any', 'python3 (<< 3.14)', 'python3-packaging', 'python3-pyparsing'}; R=[]; S=[]; E=[], B=[]; RT=[] debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/mdtraj-1.10.3' dh_numpy3 mv debian/python3-mdtraj.substvars.new debian/python3-mdtraj.substvars # setup.py builds the static lib libtheobald.a for each python version # but dh_python3 can't tell the difference between the different builds, # since py3.11 compiles libtheobald.o with -fwrapv, where py3.12 uses -fno-strict-overflow # So clean up manually (assume the binary difference is not an issue) rm -f debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib/libtheobald.a for d in debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib; do if [-d $d]; then rmdir -p --ignore-fail-on-non-empty $d; fi; done /bin/sh: 1: [-d: not found make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.10.3' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-mdtraj chmod a-x usr/share/doc/python3-mdtraj/changelog.Debian usr/share/doc/python3-mdtraj/changelog.Debian.i386 usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 gzip -9nf usr/share/doc/python3-mdtraj/changelog.Debian usr/share/doc/python3-mdtraj/changelog.Debian.i386 usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 cd '/build/reproducible-path/mdtraj-1.10.3' dh_fixperms -a -O--buildsystem=pybuild find debian/python3-mdtraj ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-mdtraj/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-mdtraj/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-mdtraj/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-mdtraj/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu/python3-mdtraj.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/python3-mdtraj.debug -- debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so objcopy --compress-debug-sections debian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu/python3-mdtraj.debug chmod 0644 -- debian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu/python3-mdtraj.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/6a/39edaadbc33de07877497f8e2838449dc7999d.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/6a/39edaadbc33de07877497f8e2838449dc7999d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/6a/39edaadbc33de07877497f8e2838449dc7999d.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/87/54c18e6be206d54e604b66d22a4e282532305c.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/87/54c18e6be206d54e604b66d22a4e282532305c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/87/54c18e6be206d54e604b66d22a4e282532305c.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4e/42817e87dbd1f64b7a7699d46c4a29e1919ce7.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4e/42817e87dbd1f64b7a7699d46c4a29e1919ce7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/4e/42817e87dbd1f64b7a7699d46c4a29e1919ce7.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/27/d71884a2abb06e97dfd57a1155d4139dd0971d.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/27/d71884a2abb06e97dfd57a1155d4139dd0971d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/27/d71884a2abb06e97dfd57a1155d4139dd0971d.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/0e/2fb0d63dbd2e07dd43365d48b94b24a7d8c5d4.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/0e/2fb0d63dbd2e07dd43365d48b94b24a7d8c5d4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/0e/2fb0d63dbd2e07dd43365d48b94b24a7d8c5d4.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d5 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d5/04eb7f8cfcc00aa27110f3a18d496a88e02cb4.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d5/04eb7f8cfcc00aa27110f3a18d496a88e02cb4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d5/04eb7f8cfcc00aa27110f3a18d496a88e02cb4.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/af/47f77be697c82cf7ef53ae8850cc949bd49c65.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/af/47f77be697c82cf7ef53ae8850cc949bd49c65.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/af/47f77be697c82cf7ef53ae8850cc949bd49c65.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/3d/f005ce8e65258bf6e37df46df0d14054fc85c0.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/3d/f005ce8e65258bf6e37df46df0d14054fc85c0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/3d/f005ce8e65258bf6e37df46df0d14054fc85c0.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/f2/0ec2b5dbe08a82b02133493bc3839c53d44003.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/f2/0ec2b5dbe08a82b02133493bc3839c53d44003.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/f2/0ec2b5dbe08a82b02133493bc3839c53d44003.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e1 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e1/c276994c91f38255c7eabe23fece9a5f21a05e.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e1/c276994c91f38255c7eabe23fece9a5f21a05e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e1/c276994c91f38255c7eabe23fece9a5f21a05e.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/core/lib/libtheobald.a install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-mdtraj/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-mdtraj/usr/lib/debug install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/share/doc ln -s python3-mdtraj debian/.debhelper/python3-mdtraj/dbgsym-root/usr/share/doc/python3-mdtraj-dbgsym install -m0755 -d debian/.debhelper/python3-mdtraj dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-mdtraj/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN dpkg-shlibdeps -Tdebian/python3-mdtraj.substvars debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/postinst cat debian/python3-mdtraj.postinst.debhelper >> debian/python3-mdtraj/DEBIAN/postinst chmod 0755 -- debian/python3-mdtraj/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/prerm cat debian/python3-mdtraj.prerm.debhelper >> debian/python3-mdtraj/DEBIAN/prerm chmod 0755 -- debian/python3-mdtraj/DEBIAN/prerm dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN echo misc:Depends= >> debian/python3-mdtraj.substvars echo misc:Pre-Depends= >> debian/python3-mdtraj.substvars install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/.debhelper/python3-mdtraj/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-mdtraj-dbgsym "-DDepends=python3-mdtraj (= \${binary:Version})" "-DDescription=debug symbols for python3-mdtraj" "-DBuild-Ids=0e2fb0d63dbd2e07dd43365d48b94b24a7d8c5d4 27d71884a2abb06e97dfd57a1155d4139dd0971d 3df005ce8e65258bf6e37df46df0d14054fc85c0 4e42817e87dbd1f64b7a7699d46c4a29e1919ce7 6a39edaadbc33de07877497f8e2838449dc7999d 8754c18e6be206d54e604b66d22a4e282532305c af47f77be697c82cf7ef53ae8850cc949bd49c65 d504eb7f8cfcc00aa27110f3a18d496a88e02cb4 e1c276994c91f38255c7eabe23fece9a5f21a05e f20ec2b5dbe08a82b02133493bc3839c53d44003" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/python3-mdtraj chmod 0644 -- debian/python3-mdtraj/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN cd debian/python3-mdtraj >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-mdtraj/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN cd debian/.debhelper/python3-mdtraj/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-mdtraj .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-mdtraj/dbgsym-root .. dpkg-deb: building package 'python3-mdtraj' in '../python3-mdtraj_1.10.3-2+b1_i386.deb'. dpkg-deb: building package 'python3-mdtraj-dbgsym' in '../python3-mdtraj-dbgsym_1.10.3-2+b1_i386.deb'. dpkg-genbuildinfo --build=any -O../mdtraj_1.10.3-2+b1_i386.buildinfo dpkg-genchanges --build=any -O../mdtraj_1.10.3-2+b1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from mdtraj-1.10.3/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-03-12T14:20:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 12 Mar 2026 14:20:04 +0000 | +------------------------------------------------------------------------------+ mdtraj_1.10.3-2+b1_i386.changes: -------------------------------- Format: 1.8 Date: Wed, 26 Feb 2025 15:08:25 +0000 Source: mdtraj (1.10.3-2) Binary: python3-mdtraj python3-mdtraj-dbgsym Binary-Only: yes Architecture: i386 Version: 1.10.3-2+b1 Distribution: unstable Urgency: low Maintainer: Debichem Team Changed-By: all / amd64 / i386 Build Daemon (x86-conova-02) Description: python3-mdtraj - Read, write and analyze MD trajectories in Python Changes: mdtraj (1.10.3-2+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for i386; no source changes. * Rebuild with Python 3.13 only Checksums-Sha1: 1a85b24c1a0e4b491acd9bb3bceae3c8bb45fb0f 10270 mdtraj_1.10.3-2+b1_i386.buildinfo 9bb6d413c58f04d42232eb56b9ea665a08e9999b 5574176 python3-mdtraj-dbgsym_1.10.3-2+b1_i386.deb 1ad1d6689d63c7982e78be0eb2cb74a711bdaf7a 1001148 python3-mdtraj_1.10.3-2+b1_i386.deb Checksums-Sha256: edb6adb4cc7078bcedade11e85dd116873b65349963fe5a13a3b1f8c76dda4c1 10270 mdtraj_1.10.3-2+b1_i386.buildinfo c46915d662bce3f345a48e73025b236529139a4647a33073c804c6db3decf83b 5574176 python3-mdtraj-dbgsym_1.10.3-2+b1_i386.deb f9c54521173edc9c32496ee2a8cf7f330f6f3619eff02cd389b14a2cc8051c19 1001148 python3-mdtraj_1.10.3-2+b1_i386.deb Files: eea505480f476f2346b965c5410ec96a 10270 python optional mdtraj_1.10.3-2+b1_i386.buildinfo e3292fbeee364cf11b5edaaa5828ec80 5574176 debug optional python3-mdtraj-dbgsym_1.10.3-2+b1_i386.deb f604dbfa70b58bfae5d80df39621604f 1001148 python optional python3-mdtraj_1.10.3-2+b1_i386.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 12 Mar 2026 14:20:05 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mdtraj (1.10.3-2) Binary: python3-mdtraj python3-mdtraj-dbgsym Architecture: i386 Version: 1.10.3-2+b1 Binary-Only-Changes: mdtraj (1.10.3-2+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for i386; no source changes. * Rebuild with Python 3.13 only . -- all / amd64 / i386 Build Daemon (x86-conova-02) Wed, 26 Feb 2025 15:08:25 +0000 Checksums-Md5: e3292fbeee364cf11b5edaaa5828ec80 5574176 python3-mdtraj-dbgsym_1.10.3-2+b1_i386.deb f604dbfa70b58bfae5d80df39621604f 1001148 python3-mdtraj_1.10.3-2+b1_i386.deb Checksums-Sha1: 9bb6d413c58f04d42232eb56b9ea665a08e9999b 5574176 python3-mdtraj-dbgsym_1.10.3-2+b1_i386.deb 1ad1d6689d63c7982e78be0eb2cb74a711bdaf7a 1001148 python3-mdtraj_1.10.3-2+b1_i386.deb Checksums-Sha256: c46915d662bce3f345a48e73025b236529139a4647a33073c804c6db3decf83b 5574176 python3-mdtraj-dbgsym_1.10.3-2+b1_i386.deb f9c54521173edc9c32496ee2a8cf7f330f6f3619eff02cd389b14a2cc8051c19 1001148 python3-mdtraj_1.10.3-2+b1_i386.deb Build-Origin: Debian Build-Architecture: i386 Build-Date: Thu, 12 Mar 2026 14:20:03 +0000 Build-Path: /build/reproducible-path/mdtraj-1.10.3 Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.6), base-passwd (= 3.6.6), bash (= 5.2.37-1.1), binutils (= 2.44-2), binutils-common (= 2.44-2), binutils-i686-linux-gnu (= 2.44-2), bsdextrautils (= 2.40.4-5), bsdutils (= 1:2.40.4-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20241223), coreutils (= 9.5-1), 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python3-mdtraj (= 1.10.3-2+b1) Section: debug Priority: optional Description: debug symbols for python3-mdtraj Build-Ids: 0e2fb0d63dbd2e07dd43365d48b94b24a7d8c5d4 27d71884a2abb06e97dfd57a1155d4139dd0971d 3df005ce8e65258bf6e37df46df0d14054fc85c0 4e42817e87dbd1f64b7a7699d46c4a29e1919ce7 6a39edaadbc33de07877497f8e2838449dc7999d 8754c18e6be206d54e604b66d22a4e282532305c af47f77be697c82cf7ef53ae8850cc949bd49c65 d504eb7f8cfcc00aa27110f3a18d496a88e02cb4 e1c276994c91f38255c7eabe23fece9a5f21a05e f20ec2b5dbe08a82b02133493bc3839c53d44003 drwxr-xr-x root/root 0 2025-02-26 15:08 ./ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/lib/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/lib/debug/.build-id/0e/ -rw-r--r-- root/root 516872 2025-02-26 15:08 ./usr/lib/debug/.build-id/0e/2fb0d63dbd2e07dd43365d48b94b24a7d8c5d4.debug drwxr-xr-x 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./usr/share/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-02-26 15:08 ./usr/share/doc/python3-mdtraj-dbgsym -> python3-mdtraj python3-mdtraj_1.10.3-2+b1_i386.deb ----------------------------------- new Debian package, version 2.0. size 1001148 bytes: control archive=4276 bytes. 1475 bytes, 32 lines control 10226 bytes, 110 lines md5sums 273 bytes, 12 lines * postinst #!/bin/sh 386 bytes, 12 lines * prerm #!/bin/sh Package: python3-mdtraj Source: mdtraj (1.10.3-2) Version: 1.10.3-2+b1 Architecture: i386 Maintainer: Debichem Team Installed-Size: 4511 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3-netcdf4, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.38), libgcc-s1 (>= 7), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), python3-networkx, python3-pandas, python3-tables Recommends: python3-gsd Suggests: python-mdtraj-doc Section: python Priority: optional Homepage: https://mdtraj.org/ Description: Read, write and analyze MD trajectories in Python Read, write and analyze MD trajectories with only a few lines of Python code. . MDTraj is a Python library that allows users to manipulate molecular dynamics (MD) trajectories. Features include: * Wide MD format support, including pdb, xtc, trr, dcd, binpos, netcdf, mdcrd, prmtop, and more. * Extremely fast RMSD calculations (4x the speed of the original Theobald QCP). * Extensive analysis functions including those that compute bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR observables. * Lightweight, Pythonic API. . MDTraj includes a command-line application, mdconvert-mdtraj, for converting trajectories between formats. . This package installs the library for Python 3, together with the command line utilities mdconvert-mdtraj and mdinspect. drwxr-xr-x root/root 0 2025-02-26 15:08 ./ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/bin/ -rwxr-xr-x root/root 976 2025-02-26 15:08 ./usr/bin/mdconvert-mdtraj -rwxr-xr-x root/root 962 2025-02-26 15:08 ./usr/bin/mdinspect drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/lib/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-02-26 15:08 ./usr/lib/python3/dist-packages/mdtraj-1.10.3.egg-info/ -rw-r--r-- root/root 1872 2025-02-26 15:08 ./usr/lib/python3/dist-packages/mdtraj-1.10.3.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-02-26 15:08 ./usr/lib/python3/dist-packages/mdtraj-1.10.3.egg-info/dependency_links.txt -rw-r--r-- root/root 123 2025-02-26 15:08 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+------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 12 Mar 2026 14:20:10 +0000 | +------------------------------------------------------------------------------+ Build Architecture: i386 Build Type: any Build-Space: 148796 Build-Time: 335 Distribution: unstable Host Architecture: i386 Install-Time: 4 Job: /srv/rebuilderd/tmp/rebuilderdRMQvC0/inputs/mdtraj_1.10.3-2.dsc Machine Architecture: amd64 Package: mdtraj Package-Time: 353 Source-Version: 1.10.3-2 Space: 148796 Status: successful Version: 1.10.3-2+b1 -------------------------------------------------------------------------------- Finished at 2026-03-12T14:20:04Z Build needed 00:05:53, 148796k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdRMQvC0/out checking python3-mdtraj-dbgsym_1.10.3-2+b1_i386.deb: size 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