=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdqkaNGk/inputs/mdtraj_1.11.0-1_i386.buildinfo Source: mdtraj Version: 1.11.0-1 rebuilderd-worker node: infom08-amd64 +------------------------------------------------------------------------------+ | Downloading sources Tue, 30 Sep 2025 08:31:40 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian sid InRelease [207 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [11.1 MB] Fetched 22.0 MB in 2s (13.5 MB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.0-1.dsc' mdtraj_1.11.0-1.dsc 2856 SHA256:82ed97fa226d954fff22032e1f73571e5ea26304996efc992b7a8f0c96db2578 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.0.orig.tar.gz' mdtraj_1.11.0.orig.tar.gz 22723159 SHA256:fefca787f882d0716a7aeb01b4d8e30caddbd2be0b2893acfa7201c31d13c786 'https://deb.debian.org/debian/pool/main/m/mdtraj/mdtraj_1.11.0-1.debian.tar.xz' mdtraj_1.11.0-1.debian.tar.xz 298656 SHA256:adea16845a36ab69788ef02c54702a4fb881868452a22766fd4a0e67c93db9a3 fefca787f882d0716a7aeb01b4d8e30caddbd2be0b2893acfa7201c31d13c786 mdtraj_1.11.0.orig.tar.gz adea16845a36ab69788ef02c54702a4fb881868452a22766fd4a0e67c93db9a3 mdtraj_1.11.0-1.debian.tar.xz 82ed97fa226d954fff22032e1f73571e5ea26304996efc992b7a8f0c96db2578 mdtraj_1.11.0-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Tue, 30 Sep 2025 08:31:43 +0000 | +------------------------------------------------------------------------------+ Rebuilding mdtraj=1.11.0-1 in /srv/rebuilderd/tmp/rebuilderdqkaNGk/inputs now. +------------------------------------------------------------------------------+ | WARNING: calling debrebuild without --cache, hammering snapshot.d.o :( | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdqkaNGk/out --builder=sbuild+unshare -- /srv/rebuilderd/tmp/rebuilderdqkaNGk/inputs/mdtraj_1.11.0-1_i386.buildinfo /srv/rebuilderd/tmp/rebuilderdqkaNGk/inputs/mdtraj_1.11.0-1_i386.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/mdtraj-1.11.0 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid InRelease [216 kB] Get:2 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 Packages [9904 kB] Fetched 10.1 MB in 1s (10.8 MB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250812T083319Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (1824 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb7hnvp00/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libctf0 i386 2.45-3 [95.7 kB] Fetched 95.7 kB in 0s (1774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfukw93ri/libctf0_2.45-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libhdf5-hl-310 i386 1.14.5+repack-3 [81.6 kB] Fetched 81.6 kB in 0s (517 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3hpkqe8p/libhdf5-hl-310_1.14.5+repack-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Fetched 57.7 kB in 0s (1172 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzmhi39ip/libpsl5t64_0.21.2-1.1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (3318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkwk_m3x3/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 grep i386 3.11-4 [437 kB] Fetched 437 kB in 0s (5757 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8c3b6rwo/grep_3.11-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libnettle8t64 i386 3.10.1-1 [318 kB] Fetched 318 kB in 0s (4440 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcsgg4jq6/libnettle8t64_3.10.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-bleach all 6.2.0-1 [51.2 kB] Fetched 51.2 kB in 0s (211 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppwpbxcsi/python3-bleach_6.2.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-cftime i386 1.6.4-2 [213 kB] Fetched 213 kB in 0s (556 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph0w_fo0g/python3-cftime_1.6.4-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 man-db i386 2.13.1-1 [1478 kB] Fetched 1478 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmproozbslb/man-db_2.13.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Fetched 5667 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcmxik5cx/libjs-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 bsdutils i386 1:2.41-5 [116 kB] Fetched 116 kB in 0s (2017 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.41-5_i386.deb' to '/srv/rebuilderd/tmp/tmpri_obo3o/bsdutils_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Fetched 23.5 kB in 0s (84.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplr26toq2/python3-cpuinfo_9.0.0+git20221119-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libcrypt1 i386 1:4.4.38-1 [95.7 kB] Fetched 95.7 kB in 0s (1643 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_i386.deb' to '/srv/rebuilderd/tmp/tmp8ar9_c32/libcrypt1_4.4.38-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gzip i386 1.13-1 [139 kB] Fetched 139 kB in 0s (2337 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuvspaz1c/gzip_1.13-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libasan8 i386 15.2.0-1 [2651 kB] Fetched 2651 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgguk2unn/libasan8_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libc6 i386 2.41-12 [2720 kB] Fetched 2720 kB in 0s (28.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7gf16c8_/libc6_2.41-12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libtinfo6 i386 6.5+20250216-2 [350 kB] Fetched 350 kB in 0s (4997 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzlbcmra_/libtinfo6_6.5+20250216-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-idna all 3.10-1 [42.0 kB] Fetched 42.0 kB in 0s (282 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptrec16vi/python3-idna_3.10-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 dh-python all 6.20250414 [116 kB] Fetched 116 kB in 0s (661 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0iom_h2l/dh-python_6.20250414_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsystemd0 i386 257.7-1 [485 kB] Fetched 485 kB in 0s (6367 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2wcylo01/libsystemd0_257.7-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 diffutils i386 1:3.10-4 [392 kB] Fetched 392 kB in 0s (5751 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_i386.deb' to '/srv/rebuilderd/tmp/tmpauy1gzwd/diffutils_3.10-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gcc-14 i386 14.3.0-5 [554 kB] Fetched 554 kB in 0s (7135 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjngzfl0m/gcc-14_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-markupsafe i386 2.1.5-1+b3 [14.0 kB] Fetched 14.0 kB in 0s (193 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4mttk4jy/python3-markupsafe_2.1.5-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libffi8 i386 3.4.8-2 [21.6 kB] Fetched 21.6 kB in 0s (537 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp15trw8zg/libffi8_3.4.8-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libxxhash0 i386 0.8.3-2 [39.4 kB] Fetched 39.4 kB in 0s (933 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2hbo1vaa/libxxhash0_0.8.3-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Fetched 30.5 kB in 0s (212 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm2r32o8x/libjs-sphinxdoc_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-typing-extensions all 4.14.1-1 [91.3 kB] Fetched 91.3 kB in 0s (584 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpab24e2w7/python3-typing-extensions_4.14.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (460 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0ickbhp/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (83.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0u1npkt/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-numpy-dev i386 1:2.2.4+ds-1 [145 kB] Fetched 145 kB in 0s (938 kB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.2.4+ds-1_i386.deb' to '/srv/rebuilderd/tmp/tmphpat4n30/python3-numpy-dev_2.2.4+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libperl5.40 i386 5.40.1-6 [3944 kB] Fetched 3944 kB in 0s (36.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbcii7md/libperl5.40_5.40.1-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libstdc++-14-dev i386 14.3.0-5 [2727 kB] Fetched 2727 kB in 0s (26.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdf6om_h/libstdc++-14-dev_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libcap2 i386 1:2.75-10+b1 [29.8 kB] Fetched 29.8 kB in 0s (703 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b1_i386.deb' to '/srv/rebuilderd/tmp/tmp8o0jeqbn/libcap2_2.75-10+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Fetched 423 kB in 0s (5527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp627jh_6r/libp11-kit0_0.25.5-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 findutils i386 4.10.0-3 [714 kB] Fetched 714 kB in 0s (4357 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8jea_m4/findutils_4.10.0-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 dash i386 0.5.12-12 [103 kB] Fetched 103 kB in 0s (1739 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4c5z83d2/dash_0.5.12-12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jupyter-core all 5.7.2-5 [35.3 kB] Fetched 35.3 kB in 0s (248 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph0yklj3i/python3-jupyter-core_5.7.2-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpython3-dev i386 3.13.5-1 [10.5 kB] Fetched 10.5 kB in 0s (70.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp28jnot8g/libpython3-dev_3.13.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libbz2-1.0 i386 1.0.8-6 [38.1 kB] Fetched 38.1 kB in 0s (749 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4sn1lcoe/libbz2-1.0_1.0.8-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsqlite3-0 i386 3.46.1-7 [990 kB] Fetched 990 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwznlyauk/libsqlite3-0_3.46.1-7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Fetched 2210 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5hv6_vtl/fonts-mathjax_2.7.9+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-roman all 5.0-1 [10.6 kB] Fetched 10.6 kB in 0s (67.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8khyjgj4/python3-roman_5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jupyterlab-pygments all 0.2.2-3 [6096 B] Fetched 6096 B in 0s (23.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4p99fesu/python3-jupyterlab-pygments_0.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 perl-modules-5.40 all 5.40.1-6 [3019 kB] Fetched 3019 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4pnfa05b/perl-modules-5.40_5.40.1-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 ncurses-bin i386 6.5+20250216-2 [441 kB] Fetched 441 kB in 0s (5893 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpouerqlwu/ncurses-bin_6.5+20250216-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpam-modules-bin i386 1.7.0-5 [51.3 kB] Fetched 51.3 kB in 0s (1043 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj4ieqgg3/libpam-modules-bin_1.7.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-nbformat all 5.9.1-1 [45.1 kB] Fetched 45.1 kB in 0s (157 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6bysy1t8/python3-nbformat_5.9.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gcc-i686-linux-gnu i386 4:14.2.0-1 [1428 B] Fetched 1428 B in 0s (35.2 kB/s) dpkg-name: info: moved 'gcc-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmpuz8sjey3/gcc-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Fetched 108 kB in 0s (659 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps_pz3c3a/python3-chardet_5.2.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-tinycss2 all 1.4.0-2 [25.0 kB] Fetched 25.0 kB in 0s (183 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpidy48x5m/python3-tinycss2_1.4.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkxzfayu7/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (3619 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2gipkzuw/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libzstd1 i386 1.5.7+dfsg-1 [309 kB] Fetched 309 kB in 0s (2573 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqfjdg5n1/libzstd1_1.5.7+dfsg-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsmartcols1 i386 2.41-5 [151 kB] Fetched 151 kB in 0s (2570 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjs_1n2y7/libsmartcols1_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (6426 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe1p063rq/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsz2 i386 1.1.3-1+b1 [8128 B] Fetched 8128 B in 0s (59.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqnwneoy/libsz2_1.1.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsodium23 i386 1.0.18-1+b2 [186 kB] Fetched 186 kB in 0s (1008 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ke4ex1q/libsodium23_1.0.18-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-netcdf4 i386 1.7.2-1+b4 [600 kB] Fetched 600 kB in 0s (1530 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy0684258/python3-netcdf4_1.7.2-1+b4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (727 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7q36j055/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpython3.13 i386 3.13.6-1 [2209 kB] Fetched 2209 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpddef6ivw/libpython3.13_3.13.6-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (438 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp90xqn4eo/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gcc-14-base i386 14.3.0-5 [51.5 kB] Fetched 51.5 kB in 0s (1048 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpklsi1gu8/gcc-14-base_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libelf1t64 i386 0.192-4 [195 kB] Fetched 195 kB in 0s (3162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpusdzf_es/libelf1t64_0.192-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pytest-rerunfailures all 15.1-1 [17.2 kB] Fetched 17.2 kB in 0s (64.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd5em_z_l/python3-pytest-rerunfailures_15.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 cython3 i386 3.0.11+dfsg-2+b1 [2467 kB] Fetched 2467 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp44ctrlor/cython3_3.0.11+dfsg-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jsonschema all 4.19.2-6 [71.4 kB] Fetched 71.4 kB in 0s (418 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7yj2xeo1/python3-jsonschema_4.19.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 binutils i386 2.45-3 [270 kB] Fetched 270 kB in 0s (3598 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp87sufif/binutils_2.45-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3.13 i386 3.13.6-1 [761 kB] Fetched 761 kB in 0s (9519 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxrj3vadw/python3.13_3.13.6-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpython3.13-dev i386 3.13.6-1 [5477 kB] Fetched 5477 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7r28wqlc/libpython3.13-dev_3.13.6-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 cpp-14 i386 14.3.0-5 [1272 B] Fetched 1272 B in 0s (31.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0pfv0oqs/cpp-14_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpam0g i386 1.7.0-5 [72.8 kB] Fetched 72.8 kB in 0s (1463 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpanmmg2bo/libpam0g_1.7.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libhogweed6t64 i386 3.10.1-1 [338 kB] Fetched 338 kB in 0s (4877 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx4u4kl0y/libhogweed6t64_3.10.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-tornado i386 6.4.2-3 [349 kB] Fetched 349 kB in 0s (2000 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_tksk02_/python3-tornado_6.4.2-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 ca-certificates all 20250419 [162 kB] Fetched 162 kB in 0s (2533 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjv3m8916/ca-certificates_20250419_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jinja2 all 3.1.6-1 [107 kB] Fetched 107 kB in 0s (1624 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzv9g88be/python3-jinja2_3.1.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libcrypt-dev i386 1:4.4.38-1 [126 kB] Fetched 126 kB in 0s (1810 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_i386.deb' to '/srv/rebuilderd/tmp/tmpc19xffhz/libcrypt-dev_4.4.38-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (487 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjbroy59b/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 openssl-provider-legacy i386 3.5.2-1 [303 kB] Fetched 303 kB in 0s (4538 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph01kmcbt/openssl-provider-legacy_3.5.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libkeyutils1 i386 1.6.3-6 [9964 B] Fetched 9964 B in 0s (61.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5nv8vpfn/libkeyutils1_1.6.3-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 perl i386 5.40.1-6 [267 kB] Fetched 267 kB in 0s (2143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpno36ywlu/perl_5.40.1-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 g++ i386 4:14.2.0-1 [1340 B] Fetched 1340 B in 0s (12.6 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp1fqdayp7/g++_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Fetched 26.9 kB in 0s (242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb6qr_tmk/python3-pluggy_1.5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB] Fetched 836 kB in 0s (3031 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt34v182i/python3-pygments_2.18.0+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 sed i386 4.9-2 [333 kB] Fetched 333 kB in 0s (4959 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7iypzq2t/sed_4.9-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 linux-libc-dev all 6.12.38-1 [2627 kB] Fetched 2627 kB in 0s (23.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5uemuewe/linux-libc-dev_6.12.38-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpython3.13-stdlib i386 3.13.6-1 [1965 kB] Fetched 1965 kB in 0s (9666 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2qxxci50/libpython3.13-stdlib_3.13.6-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgfortran5 i386 15.2.0-1 [730 kB] Fetched 730 kB in 0s (1598 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp704uufc8/libgfortran5_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libunistring5 i386 1.3-2 [471 kB] Fetched 471 kB in 0s (6748 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4bsjjkt/libunistring5_1.3-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libaudit1 i386 1:4.0.5-1 [56.8 kB] Fetched 56.8 kB in 0s (1183 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.5-1_i386.deb' to '/srv/rebuilderd/tmp/tmp_ips9ups/libaudit1_4.0.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (74.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbj2nhq8v/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libquadmath0 i386 15.2.0-1 [229 kB] Fetched 229 kB in 0s (3733 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeekfzxn6/libquadmath0_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libattr1 i386 1:2.5.2-3 [23.1 kB] Fetched 23.1 kB in 0s (530 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_i386.deb' to '/srv/rebuilderd/tmp/tmptydzdnth/libattr1_2.5.2-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-attr all 25.3.0-1 [69.5 kB] Fetched 69.5 kB in 0s (455 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7vjqecwu/python3-attr_25.3.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (1094 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5l2far3/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 bsdextrautils i386 2.41-5 [98.7 kB] Fetched 98.7 kB in 0s (1706 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdov8r9cd/bsdextrautils_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3.13-dev i386 3.13.6-1 [504 kB] Fetched 504 kB in 0s (3210 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ru0xmuy/python3.13-dev_3.13.6-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 tar i386 1.35+dfsg-3.1 [838 kB] Fetched 838 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbttgwadj/tar_1.35+dfsg-3.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libaudit-common all 1:4.0.5-1 [13.5 kB] Fetched 13.5 kB in 0s (292 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.5-1_all.deb' to '/srv/rebuilderd/tmp/tmpv3z0pii1/libaudit-common_4.0.5-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB] Fetched 128 kB in 0s (770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbu01hsll/docutils-common_0.21.2+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (103 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphhwgm7d8/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-nbconvert all 7.16.6-1 [160 kB] Fetched 160 kB in 0s (492 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptv3hox27/python3-nbconvert_7.16.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB] Fetched 43.4 kB in 0s (267 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9j2ovpoz/python3-defusedxml_0.7.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 cpp-i686-linux-gnu i386 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (120 kB/s) dpkg-name: info: moved 'cpp-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp6gl8g7ow/cpp-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-zmq i386 26.4.0-1 [176 kB] Fetched 176 kB in 0s (467 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_v1zos70/python3-zmq_26.4.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (939 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplzfn1wg5/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (6745 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzvqfd7t6/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (4323 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbpl5z4a_/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-gsd i386 4.0.0-1 [210 kB] Fetched 210 kB in 0s (507 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkprg07om/python3-gsd_4.0.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Fetched 22.4 kB in 0s (95.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxezc6vny/python3-fastjsonschema_2.21.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Fetched 299 kB in 0s (4433 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpchvocl6_/libbrotli1_1.1.0-2+b7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgdbm-compat4t64 i386 1.24-2 [50.8 kB] Fetched 50.8 kB in 0s (1037 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgndlr0d9/libgdbm-compat4t64_1.24-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (207 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbc3_dzne/python3-inflect_7.3.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-minimal i386 3.13.5-1 [27.2 kB] Fetched 27.2 kB in 0s (622 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn39gboz_/python3-minimal_3.13.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libuuid1 i386 2.41-5 [38.9 kB] Fetched 38.9 kB in 0s (951 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxelw05z/libuuid1_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (3655 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb9c0ednb/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libngtcp2-16 i386 1.11.0-1 [163 kB] Fetched 163 kB in 0s (1937 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1nutc0o8/libngtcp2-16_1.11.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libcap-ng0 i386 0.8.5-4+b1 [17.9 kB] Fetched 17.9 kB in 0s (452 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvi77w26x/libcap-ng0_0.8.5-4+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgmp10 i386 2:6.3.0+dfsg-3 [572 kB] Fetched 572 kB in 0s (6885 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_i386.deb' to '/srv/rebuilderd/tmp/tmp71nl8hre/libgmp10_6.3.0+dfsg-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 g++-14-i686-linux-gnu i386 14.3.0-5 [13.0 MB] Fetched 13.0 MB in 0s (44.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph153db_p/g++-14-i686-linux-gnu_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 binutils-gold-i686-linux-gnu i386 2.44-2 [1286 kB] Fetched 1286 kB in 0s (13.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvu6p9v_1/binutils-gold-i686-linux-gnu_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gettext i386 0.23.1-2 [1713 kB] Fetched 1713 kB in 0s (18.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmlaawvy4/gettext_0.23.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 coreutils i386 9.7-3 [3093 kB] Fetched 3093 kB in 0s (29.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_wejl_1/coreutils_9.7-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (1973 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmft2g5ag/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 sensible-utils all 0.0.25 [25.0 kB] Fetched 25.0 kB in 0s (611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppo3tuzbz/sensible-utils_0.0.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-dateutil all 2.9.0-4 [79.4 kB] Fetched 79.4 kB in 0s (520 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6kr0y4fz/python3-dateutil_2.9.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 sphinx-common all 8.1.3-5 [617 kB] Fetched 617 kB in 0s (3480 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp933pgyqf/sphinx-common_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jupyter-client all 8.6.3-2 [92.4 kB] Fetched 92.4 kB in 0s (330 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q8otmu0/python3-jupyter-client_8.6.3-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Fetched 3097 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6fw6lx6v/python3-pandas_2.2.3+dfsg-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Fetched 256 kB in 0s (4184 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprl7ee8ai/libssh2-1t64_1.11.1-1_i386.deb' Downloading dependency 1 of 308: libarchive-zip-perl:i386=1.68-1 Downloading dependency 2 of 308: libctf0:i386=2.45-3 Downloading dependency 3 of 308: libhdf5-hl-310:i386=1.14.5+repack-3 Downloading dependency 4 of 308: libpsl5t64:i386=0.21.2-1.1+b1 Downloading dependency 5 of 308: python3-pkg-resources:i386=78.1.1-0.1 Downloading dependency 6 of 308: grep:i386=3.11-4 Downloading dependency 7 of 308: libnettle8t64:i386=3.10.1-1 Downloading dependency 8 of 308: python3-bleach:i386=6.2.0-1 Downloading dependency 9 of 308: python3-cftime:i386=1.6.4-2 Downloading dependency 10 of 308: man-db:i386=2.13.1-1 Downloading dependency 11 of 308: libjs-mathjax:i386=2.7.9+dfsg-1 Downloading dependency 12 of 308: bsdutils:i386=1:2.41-5 Downloading dependency 13 of 308: python3-cpuinfo:i386=9.0.0+git20221119-3 Downloading dependency 14 of 308: libcrypt1:i386=1:4.4.38-1 Downloading dependency 15 of 308: gzip:i386=1.13-1 Downloading dependency 16 of 308: libasan8:i386=15.2.0-1 Downloading dependency 17 of 308: libc6:i386=2.41-12 Downloading dependency 18 of 308: libtinfo6:i386=6.5+20250216-2 Downloading dependency 19 of 308: python3-idna:i386=3.10-1 Downloading dependency 20 of 308: dh-python:i386=6.20250414 Downloading dependency 21 of 308: libsystemd0:i386=257.7-1 Downloading dependency 22 of 308: diffutils:i386=1:3.10-4 Downloading dependency 23 of 308: gcc-14:i386=14.3.0-5 Downloading dependency 24 of 308: python3-markupsafe:i386=2.1.5-1+b3 Downloading dependency 25 of 308: libffi8:i386=3.4.8-2 Downloading dependency 26 of 308: libxxhash0:i386=0.8.3-2 Downloading dependency 27 of 308: libjs-sphinxdoc:i386=8.1.3-5 Downloading dependency 28 of 308: python3-typing-extensions:i386=4.14.1-1 Downloading dependency 29 of 308: libfile-stripnondeterminism-perl:i386=1.14.1-2 Downloading dependency 30 of 308: python3-autocommand:i386=2.2.2-3 Downloading dependency 31 of 308: python3-numpy-dev:i386=1:2.2.4+ds-1 Downloading dependency 32 of 308: libperl5.40:i386=5.40.1-6 Downloading dependency 33 of 308: libstdc++-14-dev:i386=14.3.0-5 Downloading dependency 34 of 308: libcap2:i386=1:2.75-10+b1 Downloading dependency 35 of 308: libp11-kit0:i386=0.25.5-3 Downloading dependency 36 of 308: findutils:i386=4.10.0-3 Downloading dependency 37 of 308: dash:i386=0.5.12-12 Downloading dependency 38 of 308: python3-jupyter-core:i386=5.7.2-5 Downloading dependency 39 of 308: libpython3-dev:i386=3.13.5-1 Downloading dependency 40 of 308: libbz2-1.0:i386=1.0.8-6 Downloading dependency 41 of 308: libsqlite3-0:i386=3.46.1-7 Downloading dependency 42 of 308: fonts-mathjax:i386=2.7.9+dfsg-1 Downloading dependency 43 of 308: python3-roman:i386=5.0-1 Downloading dependency 44 of 308: python3-jupyterlab-pygments:i386=0.2.2-3 Downloading dependency 45 of 308: perl-modules-5.40:i386=5.40.1-6 Downloading dependency 46 of 308: ncurses-bin:i386=6.5+20250216-2 Downloading dependency 47 of 308: libpam-modules-bin:i386=1.7.0-5 Downloading dependency 48 of 308: python3-nbformat:i386=5.9.1-1 Downloading dependency 49 of 308: gcc-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 50 of 308: python3-chardet:i386=5.2.0+dfsg-2 Downloading dependency 51 of 308: python3-tinycss2:i386=1.4.0-2 Downloading dependency 52 of 308: python3-jaraco.context:i386=6.0.1-1 Downloading dependency 53 of 308: po-debconf:i386=1.0.21+nmu1 Downloading dependency 54 of 308: libzstd1:i386=1.5.7+dfsg-1 Downloading dependency 55 of 308: libsmartcols1:i386=2.41-5 Downloading dependency 56 of 308: autoconf:i386=2.72-3.1 Downloading dependency 57 of 308: libsz2:i386=1.1.3-1+b1 Downloading dependency 58 of 308: libsodium23:i386=1.0.18-1+b2 Downloading dependency 59 of 308: python3-netcdf4:i386=1.7.2-1+b4 Downloading dependency 60 of 308: media-types:i386=13.0.0 Downloading dependency 61 of 308: libpython3.13:i386=3.13.6-1 Downloading dependency 62 of 308: readline-common:i386=8.2-6 Downloading dependency 63 of 308: gcc-14-base:i386=14.3.0-5 Downloading dependency 64 of 308: libelf1t64:i386=0.192-4 Downloading dependency 65 of 308: python3-pytest-rerunfailures:i386=15.1-1 Downloading dependency 66 of 308: cython3:i386=3.0.11+dfsg-2+b1 Downloading dependency 67 of 308: python3-jsonschema:i386=4.19.2-6 Downloading dependency 68 of 308: binutils:i386=2.45-3 Downloading dependency 69 of 308: python3.13:i386=3.13.6-1 Downloading dependency 70 of 308: libpython3.13-dev:i386=3.13.6-1 Downloading dependency 71 of 308: 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libpython3.13-stdlib:i386=3.13.6-1 Downloading dependency 88 of 308: libgfortran5:i386=15.2.0-1 Downloading dependency 89 of 308: libunistring5:i386=1.3-2 Downloading dependency 90 of 308: libaudit1:i386=1:4.0.5-1 Downloading dependency 91 of 308: python3-jaraco.text:i386=4.0.0-1 Downloading dependency 92 of 308: libquadmath0:i386=15.2.0-1 Downloading dependency 93 of 308: libattr1:i386=1:2.5.2-3 Downloading dependency 94 of 308: python3-attr:i386=25.3.0-1 Downloading dependency 95 of 308: autotools-dev:i386=20240727.1 Downloading dependency 96 of 308: bsdextrautils:i386=2.41-5 Downloading dependency 97 of 308: python3.13-dev:i386=3.13.6-1 Downloading dependency 98 of 308: tar:i386=1.35+dfsg-3.1 Downloading dependency 99 of 308: libaudit-common:i386=1:4.0.5-1 Downloading dependency 100 of 308: docutils-common:i386=0.21.2+dfsg-2 Downloading dependency 101 of 308: python3-jaraco.functools:i386=4.1.0-1 Downloading dependency 102 of 308: python3-nbconvert:i386=7.16.6-1 Downloading dependency 103 of 308: python3-defusedxml:i386=0.7.1-3 Downloading dependency 104 of 308: cpp-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 105 of 308: python3-zmq:i386=26.4.0-1 Downloading dependency 106 of 308: init-system-helpers:i386=1.68 Downloading dependency 107 of 308: libtool:i386=2.5.4-4 Downloading dependency 108 of 308: python3-setuptools:i386=78.1.1-0.1 Downloading dependency 109 of 308: python3-gsd:i386=4.0.0-1 Downloading dependency 110 of 308: python3-fastjsonschema:i386=2.21.1-1 Downloading dependency 111 of 308: libbrotli1:i386=1.1.0-2+b7 Downloading dependency 112 of 308: libgdbm-compat4t64:i386=1.24-2 Downloading dependency 113 of 308: python3-inflect:i386=7.3.1-2 Downloading dependency 114 of 308: python3-minimal:i386=3.13.5-1 Downloading dependency 115 of 308: libuuid1:i386=2.41-5 Downloading dependency 116 of 308: libpam-runtime:i386=1.7.0-5 Downloading dependency 117 of 308: libngtcp2-16:i386=1.11.0-1 Downloading dependency 118 of 308: libcap-ng0:i386=0.8.5-4+b1 Downloading dependency 119 of 308: libgmp10:i386=2:6.3.0+dfsg-3 Downloading dependency 120 of 308: g++-14-i686-linux-gnu:i386=14.3.0-5 Downloading dependency 121 of 308: binutils-gold-i686-linux-gnu:i386=2.44-2 Downloading dependency 122 of 308: gettext:i386=0.23.1-2 Downloading dependency 123 of 308: coreutils:i386=9.7-3 Downloading dependency 124 of 308: debconf:i386=1.5.91 Downloading dependency 125 of 308: sensible-utils:i386=0.0.25 Downloading dependency 126 of 308: python3-dateutil:i386=2.9.0-4 Downloading dependency 127 of 308: sphinx-common:i386=8.1.3-5 Downloading dependency 128 of 308: python3-jupyter-client:i386=8.6.3-2 Downloading dependency 129 of 308: python3-pandas:i386=2.2.3+dfsg-9 Downloading dependency 130 of 308: libssh2-1t64:i386=1.11.1-1 Downloading dependency 131 of 308: python3-mistune:i386=3.1.3-1Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-mistune all 3.1.3-1 [35.5 kB] Fetched 35.5 kB in 0s (120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbtce37i8/python3-mistune_3.1.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgprofng0 i386 2.45-3 [849 kB] Fetched 849 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsuu9e9o9/libgprofng0_2.45-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpython3.13-minimal i386 3.13.6-1 [863 kB] Fetched 863 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvxv8qqns/libpython3.13-minimal_3.13.6-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python-tables-data all 3.10.2-2 [47.3 kB] Fetched 47.3 kB in 0s (164 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_6j7q0_4/python-tables-data_3.10.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libngtcp2-crypto-gnutls8 i386 1.11.0-1 [29.9 kB] Fetched 29.9 kB in 0s (383 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyu3p53f7/libngtcp2-crypto-gnutls8_1.11.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 binutils-i686-linux-gnu i386 2.45-3 [1105 kB] Fetched 1105 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe3svrjk1/binutils-i686-linux-gnu_2.45-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-numexpr i386 2.11.0-1 [131 kB] Fetched 131 kB in 0s (393 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz2lq2v5i/python3-numexpr_2.11.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-webencodings all 0.5.1-5 [11.1 kB] Fetched 11.1 kB in 0s (41.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn59q1bdp/python3-webencodings_0.5.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libreadline8t64 i386 8.2-6 [173 kB] Fetched 173 kB in 0s (2722 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo51wey35/libreadline8t64_8.2-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 util-linux i386 2.41-5 [1268 kB] Fetched 1268 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwk93dlox/util-linux_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libcc1-0 i386 15.2.0-1 [44.9 kB] Fetched 44.9 kB in 0s (930 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6e4rxdni/libcc1-0_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 sgml-base all 1.31+nmu1 [10.9 kB] Fetched 10.9 kB in 0s (74.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1v_m_di0/sgml-base_1.31+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-soupsieve all 2.7-1 [39.0 kB] Fetched 39.0 kB in 0s (284 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpey45jt5k/python3-soupsieve_2.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 sysvinit-utils i386 3.14-4 [34.7 kB] Fetched 34.7 kB in 0s (802 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuwfejfhj/sysvinit-utils_3.14-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libnetcdf22 i386 1:4.9.3-1 [570 kB] Fetched 570 kB in 0s (2935 kB/s) dpkg-name: info: moved 'libnetcdf22_1%3a4.9.3-1_i386.deb' to '/srv/rebuilderd/tmp/tmprjiipyy8/libnetcdf22_4.9.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-tables all 3.10.2-2 [353 kB] Fetched 353 kB in 0s (1155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnpmufafy/python3-tables_3.10.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gcc i386 4:14.2.0-1 [5132 B] Fetched 5132 B in 0s (129 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp3yy8yn3y/gcc_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 dwz i386 0.15-1+b1 [116 kB] Fetched 116 kB in 0s (1926 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp_tht_vb/dwz_0.15-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libssl3t64 i386 3.5.2-1 [2423 kB] Fetched 2423 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprx71hf4y/libssl3t64_3.5.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (8368 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjr8ghyfm/libdpkg-perl_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pandocfilters all 1.5.1-1 [23.7 kB] Fetched 23.7 kB in 0s (89.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7_05b7h6/python3-pandocfilters_1.5.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libmount1 i386 2.41-5 [225 kB] Fetched 225 kB in 0s (3658 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1phixgb/libmount1_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Fetched 41.2 kB in 0s (781 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpopecgl_3/libpipeline1_1.5.8-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 liblzma5 i386 5.8.1-1 [320 kB] Fetched 320 kB in 0s (4470 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9z1m2quc/liblzma5_5.8.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-charset-normalizer i386 3.4.2-1 [129 kB] Fetched 129 kB in 0s (768 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjv7riogs/python3-charset-normalizer_3.4.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libexpat1-dev i386 2.7.1-2 [167 kB] Fetched 167 kB in 0s (1083 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplp0kol06/libexpat1-dev_2.7.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 binutils-gold i386 2.44-2 [202 kB] Fetched 202 kB in 0s (3317 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1kmzo3t/binutils-gold_2.44-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Fetched 9652 B in 0s (61.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1joqh1h9/python3-certifi_2025.1.31+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gcc-15-base i386 15.2.0-1 [52.0 kB] Fetched 52.0 kB in 0s (1087 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpic8ff2x7/gcc-15-base_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libk5crypto3 i386 1.21.3-5 [84.3 kB] Fetched 84.3 kB in 0s (1650 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkg__rf3q/libk5crypto3_1.21.3-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libjson-perl all 4.10000-1 [87.5 kB] Fetched 87.5 kB in 0s (843 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxo01l8gp/libjson-perl_4.10000-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libnghttp3-9 i386 1.8.0-1 [78.7 kB] Fetched 78.7 kB in 0s (1595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzx9tdcx/libnghttp3-9_1.8.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 file i386 1:5.46-5 [43.5 kB] Fetched 43.5 kB in 0s (845 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_i386.deb' to '/srv/rebuilderd/tmp/tmp1wngufm_/file_5.46-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-networkx all 3.2.1-5 [13.0 MB] Fetched 13.0 MB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp10epj45q/python3-networkx_3.2.1-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgdbm6t64 i386 1.24-2 [80.2 kB] Fetched 80.2 kB in 0s (1401 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0qjuky4d/libgdbm6t64_1.24-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libmd0 i386 1.1.0-2+b1 [38.4 kB] Fetched 38.4 kB in 0s (903 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgmpck3v/libmd0_1.1.0-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libnorm1t64 i386 1.5.9+dfsg-3.1+b2 [239 kB] Fetched 239 kB in 0s (1362 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps2a20p5z/libnorm1t64_1.5.9+dfsg-3.1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 g++-14 i386 14.3.0-5 [28.2 kB] Fetched 28.2 kB in 0s (694 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgnkp8ycw/g++-14_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libcom-err2 i386 1.47.2-3+b3 [25.3 kB] Fetched 25.3 kB in 0s (629 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj6l6gmwk/libcom-err2_1.47.2-3+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pytest all 8.3.5-2 [250 kB] Fetched 250 kB in 0s (1742 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgcrhhmi7/python3-pytest_8.3.5-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-scipy i386 1.15.3-1 [16.5 MB] Fetched 16.5 MB in 0s (47.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm4bt6sq7/python3-scipy_1.15.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-alabaster all 0.7.16-0.1 [27.9 kB] Fetched 27.9 kB in 0s (160 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3bez_0h7/python3-alabaster_0.7.16-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libdb5.3t64 i386 5.3.28+dfsg2-9 [767 kB] Fetched 767 kB in 0s (9859 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaqr90csx/libdb5.3t64_5.3.28+dfsg2-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libncursesw6 i386 6.5+20250216-2 [148 kB] Fetched 148 kB in 0s (2427 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpewuwd3vl/libncursesw6_6.5+20250216-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (65.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubepxl6e/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-tables-lib i386 3.10.2-2+b1 [519 kB] Fetched 519 kB in 0s (1346 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplc_62avc/python3-tables-lib_3.10.2-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pandas-lib i386 2.2.3+dfsg-9 [4409 kB] Fetched 4409 kB in 0s (9066 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpduf7g2gj/python3-pandas-lib_2.2.3+dfsg-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (222 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6zoce05n/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Fetched 9020 B in 0s (39.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjbomvjqj/python3-jsonschema-specifications_2023.12.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (79.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzjaxipeu/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libblkid1 i386 2.41-5 [187 kB] Fetched 187 kB in 0s (2989 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj1z_7q97/libblkid1_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkq5_hrea/dpkg-dev_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 base-passwd i386 3.6.7 [54.4 kB] Fetched 54.4 kB in 0s (1025 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprk_zgag5/base-passwd_3.6.7_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 0s (222 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpla6rjh_o/python3-decorator_5.2.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgcc-14-dev i386 14.3.0-5 [2580 kB] Fetched 2580 kB in 0s (24.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt4vt5lca/libgcc-14-dev_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgomp1 i386 15.2.0-1 [142 kB] Fetched 142 kB in 0s (2431 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp6djlbd5/libgomp1_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libbinutils i386 2.45-3 [598 kB] Fetched 598 kB in 0s (7714 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw64f1vk4/libbinutils_2.45-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libcurl4t64 i386 8.15.0-1 [440 kB] Fetched 440 kB in 0s (5946 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyim079e0/libcurl4t64_8.15.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 debianutils i386 5.23.2 [92.7 kB] Fetched 92.7 kB in 0s (1747 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp26hd78l4/debianutils_5.23.2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgcc-s1 i386 15.2.0-1 [87.0 kB] Fetched 87.0 kB in 0s (1447 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm104meul/libgcc-s1_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-platformdirs all 4.3.7-1 [16.6 kB] Fetched 16.6 kB in 0s (377 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq4mh853f/python3-platformdirs_4.3.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python-babel-localedata all 2.17.0-1 [6050 kB] Fetched 6050 kB in 0s (25.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7jv892mm/python-babel-localedata_2.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-urllib3 all 2.3.0-3 [115 kB] Fetched 115 kB in 0s (757 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_9zmqqvi/python3-urllib3_2.3.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 cpp i386 4:14.2.0-1 [1564 B] Fetched 1564 B in 0s (36.9 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmpc1kwafv3/cpp_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-imagesize all 1.4.1-1 [6688 B] Fetched 6688 B in 0s (49.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7ee4stu/python3-imagesize_1.4.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-9 [20.8 kB] Fetched 20.8 kB in 0s (514 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptf5zcfba/libsasl2-modules-db_2.1.28+dfsg1-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 m4 i386 1.4.19-8 [301 kB] Fetched 301 kB in 0s (4113 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lvqef0v/m4_1.4.19-8_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (9713 kB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpuo_86twf/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (1774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcvv0l25_/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-babel all 2.17.0-1 [117 kB] Fetched 117 kB in 0s (665 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz4n9xv2_/python3-babel_2.17.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB] Fetched 403 kB in 0s (2202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1sr50r3/python3-docutils_0.21.2+dfsg-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Fetched 69.2 kB in 0s (1195 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzpiuc0bb/libuchardet0_0.0.8-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsframe2 i386 2.45-3 [79.5 kB] Fetched 79.5 kB in 0s (1532 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk70loxa6/libsframe2_2.45-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-html5lib all 1.2-2 [92.1 kB] Fetched 92.1 kB in 0s (292 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoe__zf7d/python3-html5lib_1.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpython3-all-dev i386 3.13.5-1 [1068 B] Fetched 1068 B in 0s (18.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6p00u5az/libpython3-all-dev_3.13.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-cffi-backend i386 1.17.1-3 [96.4 kB] Fetched 96.4 kB in 0s (670 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy2wdk74m/python3-cffi-backend_1.17.1-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 dpkg i386 1.22.21 [1564 kB] Fetched 1564 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzy3aq1h7/dpkg_1.22.21_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 binutils-common i386 2.45-3 [2558 kB] Fetched 2558 kB in 0s (24.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7nftxjd3/binutils-common_2.45-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Fetched 62.4 kB in 0s (1098 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsuo97tpw/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libitm1 i386 15.2.0-1 [28.0 kB] Fetched 28.0 kB in 0s (667 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0k7g8hw/libitm1_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-bs4 all 4.13.4-2 [167 kB] Fetched 167 kB in 0s (938 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwm69ousm/python3-bs4_4.13.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-numpy i386 1:2.2.4+ds-1 [5060 kB] Fetched 5060 kB in 0s (22.2 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.2.4+ds-1_i386.deb' to '/srv/rebuilderd/tmp/tmp9qa6jq0_/python3-numpy_2.2.4+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libudev1 i386 257.7-1 [155 kB] Fetched 155 kB in 0s (2595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkrkah00f/libudev1_257.7-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libjansson4 i386 2.14-2+b3 [41.6 kB] Fetched 41.6 kB in 0s (798 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfmnevci_/libjansson4_2.14-2+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libbsd0 i386 0.12.2-2 [134 kB] Fetched 134 kB in 0s (796 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsr5tu250/libbsd0_0.12.2-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-nbsphinx-link all 1.3.0-4 [6264 B] Fetched 6264 B in 0s (25.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvayrt2l9/python3-nbsphinx-link_1.3.0-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpgm-5.3-0t64 i386 5.3.128~dfsg-2.1+b1 [169 kB] Fetched 169 kB in 0s (957 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj31beay3/libpgm-5.3-0t64_5.3.128~dfsg-2.1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libmpfr6 i386 4.2.2-1 [757 kB] Fetched 757 kB in 0s (9225 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpue0au0n8/libmpfr6_4.2.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gettext-base i386 0.23.1-2 [245 kB] Fetched 245 kB in 0s (3506 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd0p0xeeg/gettext-base_0.23.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 rpcsvc-proto i386 1.4.3-1 [66.1 kB] Fetched 66.1 kB in 0s (1249 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplxjerv4e/rpcsvc-proto_1.4.3-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libkrb5support0 i386 1.21.3-5 [35.3 kB] Fetched 35.3 kB in 0s (813 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1cafpexk/libkrb5support0_1.21.3-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsnappy1v5 i386 1.2.2-1 [31.2 kB] Fetched 31.2 kB in 0s (202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_8bq7z6/libsnappy1v5_1.2.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libnghttp2-14 i386 1.64.0-1.1 [83.1 kB] Fetched 83.1 kB in 0s (1642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkn2wdtjl/libnghttp2-14_1.64.0-1.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 groff-base i386 1.23.0-9 [1202 kB] Fetched 1202 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ucimgk7/groff-base_1.23.0-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 perl-base i386 5.40.1-6 [1768 kB] Fetched 1768 kB in 0s (17.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp06tgck_/perl-base_5.40.1-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libc6-dev i386 2.41-12 [1809 kB] Fetched 1809 kB in 0s (18.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg5nc8kv_/libc6-dev_2.41-12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python-tinycss2-common all 1.4.0-2 [44.7 kB] Fetched 44.7 kB in 0s (429 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vhsbmtx/python-tinycss2-common_1.4.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 liblzo2-2 i386 2.10-3+b1 [59.5 kB] Fetched 59.5 kB in 0s (371 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprm8511n6/liblzo2-2_2.10-3+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-psutil i386 7.0.0-2 [221 kB] Fetched 221 kB in 0s (1217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkllyj9fp/python3-psutil_7.0.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-dev i386 3.13.5-1 [26.1 kB] Fetched 26.1 kB in 0s (176 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwateui3j/python3-dev_3.13.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpcre2-8-0 i386 10.45-1 [295 kB] Fetched 295 kB in 0s (4170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpydtea88g/libpcre2-8-0_10.45-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libcurl3t64-gnutls i386 8.15.0-1 [432 kB] Fetched 432 kB in 0s (3747 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpstcmh9kv/libcurl3t64-gnutls_8.15.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libzmq5 i386 4.3.5-1+b3 [308 kB] Fetched 308 kB in 0s (1669 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5xl59u6s/libzmq5_4.3.5-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pytz all 2025.2-3 [152 kB] Fetched 152 kB in 0s (762 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_t8yw0e/python3-pytz_2025.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 xz-utils i386 5.8.1-1 [664 kB] Fetched 664 kB in 0s (7699 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7r3a_rq/xz-utils_5.8.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 tzdata all 2025b-4 [260 kB] Fetched 260 kB in 0s (1426 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxbm40b5/tzdata_2025b-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libatomic1 i386 15.2.0-1 [7744 B] Fetched 7744 B in 0s (181 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvzjc4cdc/libatomic1_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 xml-core all 0.19 [20.1 kB] Fetched 20.1 kB in 0s (190 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpavp5sn4i/xml-core_0.19_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libblosc2-4 i386 2.17.1+ds-1 [219 kB] Fetched 219 kB in 0s (1169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjamdcea4/libblosc2-4_2.17.1+ds-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpam-modules i386 1.7.0-5 [193 kB] Fetched 193 kB in 0s (1235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp1dkl49u/libpam-modules_1.7.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Fetched 37.3 kB in 0s (242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy722l8ml/python3-typeguard_4.4.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgssapi-krb5-2 i386 1.21.3-5 [149 kB] Fetched 149 kB in 0s (2491 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvech7lp4/libgssapi-krb5-2_1.21.3-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-all i386 3.13.5-1 [1048 B] Fetched 1048 B in 0s (7414 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjp_jbkya/python3-all_3.13.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 liblz4-1 i386 1.10.0-4 [64.3 kB] Fetched 64.3 kB in 0s (1224 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpho4qaat1/liblz4-1_1.10.0-4_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libsasl2-2 i386 2.1.28+dfsg1-9 [61.2 kB] Fetched 61.2 kB in 0s (1076 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7gl75s95/libsasl2-2_2.1.28+dfsg1-9_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 openssl i386 3.5.2-1 [1499 kB] Fetched 1499 kB in 0s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4675hr07/openssl_3.5.2-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libc-bin i386 2.41-12 [658 kB] Fetched 658 kB in 0s (6962 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuhdqew1w/libc-bin_2.41-12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-sphinx all 8.1.3-5 [468 kB] Fetched 468 kB in 0s (2722 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt2yi_bbs/python3-sphinx_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-all-dev i386 3.13.5-1 [1068 B] Fetched 1068 B in 0s (23.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp934hkzcn/python3-all-dev_3.13.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 liblapack3 i386 3.12.1-6 [2197 kB] Fetched 2197 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5wx4jq2/liblapack3_3.12.1-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libaec0 i386 1.1.3-1+b1 [25.0 kB] Fetched 25.0 kB in 0s (181 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcpc28yq_/libaec0_1.1.3-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-nbsphinx all 0.9.5+ds-1 [39.9 kB] Fetched 39.9 kB in 0s (176 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy8_145_s/python3-nbsphinx_0.9.5+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 gcc-14-i686-linux-gnu i386 14.3.0-5 [23.3 MB] Fetched 23.3 MB in 0s (95.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp36kyxhll/gcc-14-i686-linux-gnu_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (388 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzct5iwp0/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Fetched 63.5 kB in 0s (433 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd76pu98v/python3-snowballstemmer_3.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 zlib1g i386 1:1.3.dfsg+really1.3.1-1+b1 [84.7 kB] Fetched 84.7 kB in 0s (1651 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb' to '/srv/rebuilderd/tmp/tmprslo8w_n/zlib1g_1.3.dfsg+really1.3.1-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libc-dev-bin i386 2.41-12 [58.5 kB] Fetched 58.5 kB in 0s (1214 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9g5xk14g/libc-dev-bin_2.41-12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libmagic1t64 i386 1:5.46-5 [117 kB] Fetched 117 kB in 0s (2258 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_i386.deb' to '/srv/rebuilderd/tmp/tmpp6g27sla/libmagic1t64_5.46-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-packaging all 25.0-1 [56.6 kB] Fetched 56.6 kB in 0s (995 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjx_96jvf/python3-packaging_25.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 base-files i386 14 [72.9 kB] Fetched 72.9 kB in 0s (413 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4i_tv5lf/base-files_14_i386.deb' Downloading dependency 132 of 308: libgprofng0:i386=2.45-3 Downloading dependency 133 of 308: libpython3.13-minimal:i386=3.13.6-1 Downloading dependency 134 of 308: python-tables-data:i386=3.10.2-2 Downloading dependency 135 of 308: libngtcp2-crypto-gnutls8:i386=1.11.0-1 Downloading dependency 136 of 308: binutils-i686-linux-gnu:i386=2.45-3 Downloading dependency 137 of 308: python3-numexpr:i386=2.11.0-1 Downloading dependency 138 of 308: python3-webencodings:i386=0.5.1-5 Downloading dependency 139 of 308: libreadline8t64:i386=8.2-6 Downloading dependency 140 of 308: util-linux:i386=2.41-5 Downloading dependency 141 of 308: libcc1-0:i386=15.2.0-1 Downloading dependency 142 of 308: sgml-base:i386=1.31+nmu1 Downloading dependency 143 of 308: python3-soupsieve:i386=2.7-1 Downloading dependency 144 of 308: sysvinit-utils:i386=3.14-4 Downloading dependency 145 of 308: libnetcdf22:i386=1:4.9.3-1 Downloading dependency 146 of 308: python3-tables:i386=3.10.2-2 Downloading dependency 147 of 308: gcc:i386=4:14.2.0-1 Downloading dependency 148 of 308: dwz:i386=0.15-1+b1 Downloading dependency 149 of 308: libssl3t64:i386=3.5.2-1 Downloading dependency 150 of 308: libdpkg-perl:i386=1.22.21 Downloading dependency 151 of 308: python3-pandocfilters:i386=1.5.1-1 Downloading dependency 152 of 308: libmount1:i386=2.41-5 Downloading dependency 153 of 308: libpipeline1:i386=1.5.8-1 Downloading dependency 154 of 308: liblzma5:i386=5.8.1-1 Downloading dependency 155 of 308: python3-charset-normalizer:i386=3.4.2-1 Downloading dependency 156 of 308: libexpat1-dev:i386=2.7.1-2 Downloading dependency 157 of 308: binutils-gold:i386=2.44-2 Downloading dependency 158 of 308: python3-certifi:i386=2025.1.31+ds-1 Downloading dependency 159 of 308: gcc-15-base:i386=15.2.0-1 Downloading dependency 160 of 308: libk5crypto3:i386=1.21.3-5 Downloading dependency 161 of 308: libjson-perl:i386=4.10000-1 Downloading dependency 162 of 308: libnghttp3-9:i386=1.8.0-1 Downloading dependency 163 of 308: file:i386=1:5.46-5 Downloading dependency 164 of 308: python3-networkx:i386=3.2.1-5 Downloading dependency 165 of 308: libgdbm6t64:i386=1.24-2 Downloading dependency 166 of 308: libmd0:i386=1.1.0-2+b1 Downloading dependency 167 of 308: libnorm1t64:i386=1.5.9+dfsg-3.1+b2 Downloading dependency 168 of 308: g++-14:i386=14.3.0-5 Downloading dependency 169 of 308: libcom-err2:i386=1.47.2-3+b3 Downloading dependency 170 of 308: python3-pytest:i386=8.3.5-2 Downloading dependency 171 of 308: python3-scipy:i386=1.15.3-1 Downloading dependency 172 of 308: python3-alabaster:i386=0.7.16-0.1 Downloading dependency 173 of 308: libdb5.3t64:i386=5.3.28+dfsg2-9 Downloading dependency 174 of 308: libncursesw6:i386=6.5+20250216-2 Downloading dependency 175 of 308: python3-zipp:i386=3.21.0-1 Downloading dependency 176 of 308: python3-tables-lib:i386=3.10.2-2+b1 Downloading dependency 177 of 308: python3-pandas-lib:i386=2.2.3+dfsg-9 Downloading dependency 178 of 308: dh-strip-nondeterminism:i386=1.14.1-2 Downloading dependency 179 of 308: python3-jsonschema-specifications:i386=2023.12.1-2 Downloading dependency 180 of 308: netbase:i386=6.5 Downloading dependency 181 of 308: libblkid1:i386=2.41-5 Downloading dependency 182 of 308: dpkg-dev:i386=1.22.21 Downloading dependency 183 of 308: base-passwd:i386=3.6.7 Downloading dependency 184 of 308: python3-decorator:i386=5.2.1-2 Downloading dependency 185 of 308: libgcc-14-dev:i386=14.3.0-5 Downloading dependency 186 of 308: libgomp1:i386=15.2.0-1 Downloading dependency 187 of 308: libbinutils:i386=2.45-3 Downloading dependency 188 of 308: libcurl4t64:i386=8.15.0-1 Downloading dependency 189 of 308: debianutils:i386=5.23.2 Downloading dependency 190 of 308: libgcc-s1:i386=15.2.0-1 Downloading dependency 191 of 308: python3-platformdirs:i386=4.3.7-1 Downloading dependency 192 of 308: python-babel-localedata:i386=2.17.0-1 Downloading dependency 193 of 308: python3-urllib3:i386=2.3.0-3 Downloading dependency 194 of 308: cpp:i386=4:14.2.0-1 Downloading dependency 195 of 308: python3-imagesize:i386=1.4.1-1 Downloading dependency 196 of 308: libsasl2-modules-db:i386=2.1.28+dfsg1-9 Downloading dependency 197 of 308: m4:i386=1.4.19-8 Downloading dependency 198 of 308: automake:i386=1:1.17-4 Downloading dependency 199 of 308: libjs-jquery:i386=3.6.1+dfsg+~3.5.14-1 Downloading dependency 200 of 308: python3-babel:i386=2.17.0-1 Downloading dependency 201 of 308: python3-docutils:i386=0.21.2+dfsg-2 Downloading dependency 202 of 308: libuchardet0:i386=0.0.8-1+b2 Downloading dependency 203 of 308: libsframe2:i386=2.45-3 Downloading dependency 204 of 308: python3-html5lib:i386=1.2-2 Downloading dependency 205 of 308: libpython3-all-dev:i386=3.13.5-1 Downloading dependency 206 of 308: python3-cffi-backend:i386=1.17.1-3 Downloading dependency 207 of 308: dpkg:i386=1.22.21 Downloading dependency 208 of 308: binutils-common:i386=2.45-3 Downloading dependency 209 of 308: librtmp1:i386=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 210 of 308: libitm1:i386=15.2.0-1 Downloading dependency 211 of 308: python3-bs4:i386=4.13.4-2 Downloading dependency 212 of 308: python3-numpy:i386=1:2.2.4+ds-1 Downloading dependency 213 of 308: libudev1:i386=257.7-1 Downloading dependency 214 of 308: libjansson4:i386=2.14-2+b3 Downloading dependency 215 of 308: libbsd0:i386=0.12.2-2 Downloading dependency 216 of 308: python3-nbsphinx-link:i386=1.3.0-4 Downloading dependency 217 of 308: libpgm-5.3-0t64:i386=5.3.128~dfsg-2.1+b1 Downloading dependency 218 of 308: libmpfr6:i386=4.2.2-1 Downloading dependency 219 of 308: gettext-base:i386=0.23.1-2 Downloading dependency 220 of 308: rpcsvc-proto:i386=1.4.3-1 Downloading dependency 221 of 308: libkrb5support0:i386=1.21.3-5 Downloading dependency 222 of 308: libsnappy1v5:i386=1.2.2-1 Downloading dependency 223 of 308: libnghttp2-14:i386=1.64.0-1.1 Downloading dependency 224 of 308: groff-base:i386=1.23.0-9 Downloading dependency 225 of 308: perl-base:i386=5.40.1-6 Downloading dependency 226 of 308: libc6-dev:i386=2.41-12 Downloading dependency 227 of 308: python-tinycss2-common:i386=1.4.0-2 Downloading dependency 228 of 308: liblzo2-2:i386=2.10-3+b1 Downloading dependency 229 of 308: python3-psutil:i386=7.0.0-2 Downloading dependency 230 of 308: python3-dev:i386=3.13.5-1 Downloading dependency 231 of 308: libpcre2-8-0:i386=10.45-1 Downloading dependency 232 of 308: libcurl3t64-gnutls:i386=8.15.0-1 Downloading dependency 233 of 308: libzmq5:i386=4.3.5-1+b3 Downloading dependency 234 of 308: python3-pytz:i386=2025.2-3 Downloading dependency 235 of 308: xz-utils:i386=5.8.1-1 Downloading dependency 236 of 308: tzdata:i386=2025b-4 Downloading dependency 237 of 308: libatomic1:i386=15.2.0-1 Downloading dependency 238 of 308: xml-core:i386=0.19 Downloading dependency 239 of 308: libblosc2-4:i386=2.17.1+ds-1 Downloading dependency 240 of 308: libpam-modules:i386=1.7.0-5 Downloading dependency 241 of 308: python3-typeguard:i386=4.4.2-1 Downloading dependency 242 of 308: libgssapi-krb5-2:i386=1.21.3-5 Downloading dependency 243 of 308: python3-all:i386=3.13.5-1 Downloading dependency 244 of 308: liblz4-1:i386=1.10.0-4 Downloading dependency 245 of 308: libsasl2-2:i386=2.1.28+dfsg1-9 Downloading dependency 246 of 308: openssl:i386=3.5.2-1 Downloading dependency 247 of 308: libc-bin:i386=2.41-12 Downloading dependency 248 of 308: python3-sphinx:i386=8.1.3-5 Downloading dependency 249 of 308: python3-all-dev:i386=3.13.5-1 Downloading dependency 250 of 308: liblapack3:i386=3.12.1-6 Downloading dependency 251 of 308: libaec0:i386=1.1.3-1+b1 Downloading dependency 252 of 308: python3-nbsphinx:i386=0.9.5+ds-1 Downloading dependency 253 of 308: gcc-14-i686-linux-gnu:i386=14.3.0-5 Downloading dependency 254 of 308: dh-autoreconf:i386=20 Downloading dependency 255 of 308: python3-snowballstemmer:i386=3.0.1-1 Downloading dependency 256 of 308: zlib1g:i386=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 257 of 308: libc-dev-bin:i386=2.41-12 Downloading dependency 258 of 308: libmagic1t64:i386=1:5.46-5 Downloading dependency 259 of 308: python3-packaging:i386=25.0-1 Downloading dependency 260 of 308: base-files:i386=14 Downloading dependency 261 of 308: libdebconfclient0:i386=0.280Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libdebconfclient0 i386 0.280 [10.7 kB] Fetched 10.7 kB in 0s (257 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdycj966_/libdebconfclient0_0.280_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libblas3 i386 3.12.1-6 [150 kB] Fetched 150 kB in 0s (985 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2_w5tuew/libblas3_3.12.1-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libhdf5-310 i386 1.14.5+repack-3 [1327 kB] Fetched 1327 kB in 0s (5965 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4wq4xmz2/libhdf5-310_1.14.5+repack-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Fetched 51.6 kB in 0s (1083 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp486i8s7c/libtasn1-6_4.20.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libselinux1 i386 3.8.1-1 [88.3 kB] Fetched 88.3 kB in 0s (1518 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi1qwxdue/libselinux1_3.8.1-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 bash i386 5.2.37-2+b5 [1537 kB] Fetched 1537 kB in 0s (16.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp528sk3sz/bash_5.2.37-2+b5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-more-itertools all 10.7.0-1 [67.4 kB] Fetched 67.4 kB in 0s (1354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_mtw7yiz/python3-more-itertools_10.7.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libexpat1 i386 2.7.1-2 [110 kB] Fetched 110 kB in 0s (1883 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7vf0ka6/libexpat1_2.7.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Fetched 72.2 kB in 0s (422 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkr4lapq1/python3-requests_2.32.3+dfsg-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libacl1 i386 2.3.2-2+b1 [34.4 kB] Fetched 34.4 kB in 0s (820 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpej4u4dmt/libacl1_2.3.2-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 916 kB in 0s (11.4 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb' to '/srv/rebuilderd/tmp/tmp6_68zo63/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 make i386 4.4.1-2 [469 kB] Fetched 469 kB in 0s (6518 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zuwrnyr/make_4.4.1-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libubsan1 i386 15.2.0-1 [1081 kB] Fetched 1081 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q6kbziy/libubsan1_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libmagic-mgc i386 1:5.46-5 [338 kB] Fetched 338 kB in 0s (4831 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_i386.deb' to '/srv/rebuilderd/tmp/tmp0h9i4zh3/libmagic-mgc_5.46-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libdebhelper-perl all 13.25 [91.6 kB] Fetched 91.6 kB in 0s (1418 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zkg6w9m/libdebhelper-perl_13.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Fetched 6396 B in 0s (157 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppoqmkfm2/python3-iniconfig_1.1.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 cpp-14-i686-linux-gnu i386 14.3.0-5 [12.0 MB] Fetched 12.0 MB in 0s (61.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppya1gipf/cpp-14-i686-linux-gnu_14.3.0-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-versioneer all 0.29-1 [43.0 kB] Fetched 43.0 kB in 0s (281 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuic_0642/python3-versioneer_0.29-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 build-essential i386 12.12 [4620 B] Fetched 4620 B in 0s (104 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwr2fwr1e/build-essential_12.12_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libkrb5-3 i386 1.21.3-5 [355 kB] Fetched 355 kB in 0s (4964 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpovtf9zxe/libkrb5-3_1.21.3-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (4361 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_o5rahso/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libidn2-0 i386 2.3.8-2 [110 kB] Fetched 110 kB in 0s (1708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzouan6aw/libidn2-0_2.3.8-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 bzip2 i386 1.0.8-6 [40.7 kB] Fetched 40.7 kB in 0s (398 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpujgphoyb/bzip2_1.0.8-6_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 autopoint all 0.23.1-2 [770 kB] Fetched 770 kB in 0s (9585 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxtqgz14a/autopoint_0.23.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3.13-minimal i386 3.13.6-1 [2272 kB] Fetched 2272 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfqbrtjtr/python3.13-minimal_3.13.6-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libseccomp2 i386 2.6.0-2 [54.6 kB] Fetched 54.6 kB in 0s (1142 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp26dq_pe0/libseccomp2_2.6.0-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libldap2 i386 2.6.10+dfsg-1 [208 kB] Fetched 208 kB in 0s (3151 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7e0o4p3q/libldap2_2.6.10+dfsg-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Fetched 116 kB in 0s (874 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpir9fweny/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libctf-nobfd0 i386 2.45-3 [160 kB] Fetched 160 kB in 0s (2789 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptba3jbjh/libctf-nobfd0_2.45-3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 hostname i386 3.25 [11.3 kB] Fetched 11.3 kB in 0s (239 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqvmouzcl/hostname_3.25_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Fetched 70.9 kB in 0s (468 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd6upvhan/python3-traitlets_5.14.3+really5.14.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 g++-i686-linux-gnu i386 4:14.2.0-1 [1200 B] Fetched 1200 B in 0s (28.7 kB/s) dpkg-name: info: moved 'g++-i686-linux-gnu_4%3a14.2.0-1_i386.deb' to '/srv/rebuilderd/tmp/tmp97xdkqrk/g++-i686-linux-gnu_14.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-nbclient all 0.8.0-2 [62.2 kB] Fetched 62.2 kB in 0s (192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpluyn6qbp/python3-nbclient_0.8.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libisl23 i386 0.27-1 [747 kB] Fetched 747 kB in 0s (8310 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9469_zd3/libisl23_0.27-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3 i386 3.13.5-1 [28.2 kB] Fetched 28.2 kB in 0s (620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqrwhcxb9/python3_3.13.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libpython3-stdlib i386 3.13.5-1 [10.2 kB] Fetched 10.2 kB in 0s (67.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ysmf5l4/libpython3-stdlib_3.13.5-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-referencing all 0.36.2-1 [23.7 kB] Fetched 23.7 kB in 0s (89.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0xkl13o/python3-referencing_0.36.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 debhelper all 13.25 [937 kB] Fetched 937 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmparaklid6/debhelper_13.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 patch i386 2.8-2 [142 kB] Fetched 142 kB in 0s (2200 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr3pody59/patch_2.8-2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 mawk i386 1.3.4.20250131-1 [144 kB] Fetched 144 kB in 0s (2371 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_30ikfr2/mawk_1.3.4.20250131-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 liblastlog2-2 i386 2.41-5 [29.1 kB] Fetched 29.1 kB in 0s (719 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwsn6wi1l/liblastlog2-2_2.41-5_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Fetched 146 kB in 0s (850 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4vbwivm/python3-pyparsing_3.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libstdc++6 i386 15.2.0-1 [781 kB] Fetched 781 kB in 0s (4795 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaxh6a220/libstdc++6_15.2.0-1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libmpc3 i386 1.3.1-1+b3 [60.5 kB] Fetched 60.5 kB in 0s (1215 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5kobzikq/libmpc3_1.3.1-1+b3_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libblosc1 i386 1.21.5+ds-1+b2 [51.4 kB] Fetched 51.4 kB in 0s (550 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphmxycblb/libblosc1_1.21.5+ds-1+b2_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 python3-rpds-py i386 0.21.0-2+b1 [275 kB] Fetched 275 kB in 0s (1445 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7h755npo/python3-rpds-py_0.21.0-2+b1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-2.1 [733 kB] Fetched 733 kB in 0s (9186 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ys2wirn/libxml2_2.12.7+dfsg+really2.9.14-2.1_i386.deb' Get:1 http://snapshot.debian.org/archive/debian/20250812T083319Z sid/main i386 libgnutls30t64 i386 3.8.10-2 [1481 kB] Fetched 1481 kB in 0s (16.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1zr7zg0i/libgnutls30t64_3.8.10-2_i386.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_amd64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpeqqwj1qc/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: i386 is different from amd64 but can be executed natively I: using /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx 127.0.0.1 - - [30/Sep/2025 08:33:44] code 404, message File not found 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33765 ./ InRelease 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:33765 ./ Release [462 B] 127.0.0.1 - - [30/Sep/2025 08:33:44] code 404, message File not found 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33765 ./ Release.gpg 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:33765 ./ Packages [385 kB] Fetched 385 kB in 0s (26.1 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./gcc-15-base_15.2.0-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libc6_2.41-12_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libgcc-s1_15.2.0-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./mawk_1.3.4.20250131-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./base-files_14_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libtinfo6_6.5%2b20250216-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./debianutils_5.23.2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./bash_5.2.37-2%2bb5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libcap2_2.75-10%2bb1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libsystemd0_257.7-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./bsdutils_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libacl1_2.3.2-2%2bb1_i386.deb HTTP/1.1" 200 - 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- [30/Sep/2025 08:33:44] "GET /./libsqlite3-0_3.46.1-7_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./liblastlog2-2_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libmount1_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libsmartcols1_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libudev1_257.7-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libuuid1_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./util-linux_2.41-5_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libdebconfclient0_0.280_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./base-passwd_3.6.7_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./libc-bin_2.41-12_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:44] "GET /./sysvinit-utils_3.14-4_i386.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx 127.0.0.1 - - [30/Sep/2025 08:33:46] code 404, message File not found 127.0.0.1 - - [30/Sep/2025 08:33:46] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33765 ./ InRelease 127.0.0.1 - - [30/Sep/2025 08:33:46] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:33765 ./ Release 127.0.0.1 - - [30/Sep/2025 08:33:46] code 404, message File not found 127.0.0.1 - - [30/Sep/2025 08:33:46] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33765 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [30/Sep/2025 08:33:59] "GET /./libexpat1_2.7.1-2_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:59] "GET /./libpython3.13-minimal_3.13.6-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:59] "GET /./python3.13-minimal_3.13.6-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:59] "GET /./python3-minimal_3.13.5-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:59] "GET /./media-types_13.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:59] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:59] "GET /./tzdata_2025b-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:33:59] "GET /./libffi8_3.4.8-2_i386.deb HTTP/1.1" 200 - 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127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-snowballstemmer_3.0.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-sphinx_8.1.3-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-nbsphinx_0.9.5%2bds-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-nbsphinx-link_1.3.0-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-dev_3.13.5-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-all_3.13.5-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-all-dev_3.13.5-1_i386.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-versioneer_0.29-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./python3-pyparsing_3.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Sep/2025 08:34:00] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpeqqwj1qc/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx Reading package lists... Building dependency tree... Reading state information... libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libctf0 is already the newest version (2.45-3). libctf0 set to manually installed. libhdf5-hl-310 is already the newest version (1.14.5+repack-3). libhdf5-hl-310 set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. grep is already the newest version (3.11-4). libnettle8t64 is already the newest version (3.10.1-1). libnettle8t64 set to manually installed. python3-bleach is already the newest version (6.2.0-1). python3-bleach set to manually installed. python3-cftime is already the newest version (1.6.4-2). python3-cftime set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libjs-mathjax is already the newest version (2.7.9+dfsg-1). libjs-mathjax set to manually installed. bsdutils is already the newest version (1:2.41-5). python3-cpuinfo is already the newest version (9.0.0+git20221119-3). python3-cpuinfo set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). gzip is already the newest version (1.13-1). libasan8 is already the newest version (15.2.0-1). libasan8 set to manually installed. libc6 is already the newest version (2.41-12). libtinfo6 is already the newest version (6.5+20250216-2). python3-idna is already the newest version (3.10-1). python3-idna set to manually installed. dh-python is already the newest version (6.20250414). dh-python set to manually installed. libsystemd0 is already the newest version (257.7-1). diffutils is already the newest version (1:3.10-4). gcc-14 is already the newest version (14.3.0-5). gcc-14 set to manually installed. python3-markupsafe is already the newest version (2.1.5-1+b3). python3-markupsafe set to manually installed. libffi8 is already the newest version (3.4.8-2). libffi8 set to manually installed. libxxhash0 is already the newest version (0.8.3-2). libxxhash0 set to manually installed. libjs-sphinxdoc is already the newest version (8.1.3-5). libjs-sphinxdoc set to manually installed. python3-typing-extensions is already the newest version (4.14.1-1). python3-typing-extensions set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. python3-numpy-dev is already the newest version (1:2.2.4+ds-1). python3-numpy-dev set to manually installed. libperl5.40 is already the newest version (5.40.1-6). libperl5.40 set to manually installed. libstdc++-14-dev is already the newest version (14.3.0-5). libstdc++-14-dev set to manually installed. libcap2 is already the newest version (1:2.75-10+b1). libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. findutils is already the newest version (4.10.0-3). dash is already the newest version (0.5.12-12). python3-jupyter-core is already the newest version (5.7.2-5). python3-jupyter-core set to manually installed. libpython3-dev is already the newest version (3.13.5-1). libpython3-dev set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libsqlite3-0 is already the newest version (3.46.1-7). fonts-mathjax is already the newest version (2.7.9+dfsg-1). fonts-mathjax set to manually installed. python3-roman is already the newest version (5.0-1). python3-roman set to manually installed. python3-jupyterlab-pygments is already the newest version (0.2.2-3). python3-jupyterlab-pygments set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-6). perl-modules-5.40 set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). libpam-modules-bin is already the newest version (1.7.0-5). python3-nbformat is already the newest version (5.9.1-1). python3-nbformat set to manually installed. gcc-i686-linux-gnu is already the newest version (4:14.2.0-1). gcc-i686-linux-gnu set to manually installed. python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. python3-tinycss2 is already the newest version (1.4.0-2). python3-tinycss2 set to manually installed. python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-1). libsmartcols1 is already the newest version (2.41-5). autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libsz2 is already the newest version (1.1.3-1+b1). libsz2 set to manually installed. libsodium23 is already the newest version (1.0.18-1+b2). libsodium23 set to manually installed. python3-netcdf4 is already the newest version (1.7.2-1+b4). python3-netcdf4 set to manually installed. media-types is already the newest version (13.0.0). media-types set to manually installed. libpython3.13 is already the newest version (3.13.6-1). libpython3.13 set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. gcc-14-base is already the newest version (14.3.0-5). gcc-14-base set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. python3-pytest-rerunfailures is already the newest version (15.1-1). python3-pytest-rerunfailures set to manually installed. cython3 is already the newest version (3.0.11+dfsg-2+b1). cython3 set to manually installed. python3-jsonschema is already the newest version (4.19.2-6). python3-jsonschema set to manually installed. binutils is already the newest version (2.45-3). binutils set to manually installed. python3.13 is already the newest version (3.13.6-1). python3.13 set to manually installed. libpython3.13-dev is already the newest version (3.13.6-1). libpython3.13-dev set to manually installed. cpp-14 is already the newest version (14.3.0-5). cpp-14 set to manually installed. libpam0g is already the newest version (1.7.0-5). libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. python3-tornado is already the newest version (6.4.2-3). python3-tornado set to manually installed. ca-certificates is already the newest version (20250419). ca-certificates set to manually installed. python3-jinja2 is already the newest version (3.1.6-1). python3-jinja2 set to manually installed. libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. openssl-provider-legacy is already the newest version (3.5.2-1). libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. perl is already the newest version (5.40.1-6). perl set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. python3-pluggy is already the newest version (1.5.0-1). python3-pluggy set to manually installed. python3-pygments is already the newest version (2.18.0+dfsg-2). python3-pygments set to manually installed. sed is already the newest version (4.9-2). linux-libc-dev is already the newest version (6.12.38-1). linux-libc-dev set to manually installed. libpython3.13-stdlib is already the newest version (3.13.6-1). libpython3.13-stdlib set to manually installed. libgfortran5 is already the newest version (15.2.0-1). libgfortran5 set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. libaudit1 is already the newest version (1:4.0.5-1). python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libquadmath0 is already the newest version (15.2.0-1). libquadmath0 set to manually installed. libattr1 is already the newest version (1:2.5.2-3). python3-attr is already the newest version (25.3.0-1). python3-attr set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. bsdextrautils is already the newest version (2.41-5). bsdextrautils set to manually installed. python3.13-dev is already the newest version (3.13.6-1). python3.13-dev set to manually installed. tar is already the newest version (1.35+dfsg-3.1). libaudit-common is already the newest version (1:4.0.5-1). docutils-common is already the newest version (0.21.2+dfsg-2). docutils-common set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. python3-nbconvert is already the newest version (7.16.6-1). python3-nbconvert set to manually installed. python3-defusedxml is already the newest version (0.7.1-3). python3-defusedxml set to manually installed. cpp-i686-linux-gnu is already the newest version (4:14.2.0-1). cpp-i686-linux-gnu set to manually installed. python3-zmq is already the newest version (26.4.0-1). python3-zmq set to manually installed. init-system-helpers is already the newest version (1.68). libtool is already the newest version (2.5.4-4). libtool set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. python3-gsd is already the newest version (4.0.0-1). python3-gsd set to manually installed. python3-fastjsonschema is already the newest version (2.21.1-1). python3-fastjsonschema set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. python3-minimal is already the newest version (3.13.5-1). python3-minimal set to manually installed. libuuid1 is already the newest version (2.41-5). libpam-runtime is already the newest version (1.7.0-5). libngtcp2-16 is already the newest version (1.11.0-1). libngtcp2-16 set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). libgmp10 is already the newest version (2:6.3.0+dfsg-3). g++-14-i686-linux-gnu is already the newest version (14.3.0-5). g++-14-i686-linux-gnu set to manually installed. binutils-gold-i686-linux-gnu is already the newest version (2.44-2). binutils-gold-i686-linux-gnu set to manually installed. gettext is already the newest version (0.23.1-2). gettext set to manually installed. coreutils is already the newest version (9.7-3). debconf is already the newest version (1.5.91). sensible-utils is already the newest version (0.0.25). sensible-utils set to manually installed. python3-dateutil is already the newest version (2.9.0-4). python3-dateutil set to manually installed. sphinx-common is already the newest version (8.1.3-5). sphinx-common set to manually installed. python3-jupyter-client is already the newest version (8.6.3-2). python3-jupyter-client set to manually installed. python3-pandas is already the newest version (2.2.3+dfsg-9). python3-pandas set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. python3-mistune is already the newest version (3.1.3-1). python3-mistune set to manually installed. libgprofng0 is already the newest version (2.45-3). libgprofng0 set to manually installed. libpython3.13-minimal is already the newest version (3.13.6-1). libpython3.13-minimal set to manually installed. python-tables-data is already the newest version (3.10.2-2). python-tables-data set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.11.0-1). libngtcp2-crypto-gnutls8 set to manually installed. binutils-i686-linux-gnu is already the newest version (2.45-3). binutils-i686-linux-gnu set to manually installed. python3-numexpr is already the newest version (2.11.0-1). python3-numexpr set to manually installed. python3-webencodings is already the newest version (0.5.1-5). python3-webencodings set to manually installed. libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. util-linux is already the newest version (2.41-5). libcc1-0 is already the newest version (15.2.0-1). libcc1-0 set to manually installed. sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. python3-soupsieve is already the newest version (2.7-1). python3-soupsieve set to manually installed. sysvinit-utils is already the newest version (3.14-4). libnetcdf22 is already the newest version (1:4.9.3-1). libnetcdf22 set to manually installed. python3-tables is already the newest version (3.10.2-2). python3-tables set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. dwz is already the newest version (0.15-1+b1). dwz set to manually installed. libssl3t64 is already the newest version (3.5.2-1). libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. python3-pandocfilters is already the newest version (1.5.1-1). python3-pandocfilters set to manually installed. libmount1 is already the newest version (2.41-5). libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. liblzma5 is already the newest version (5.8.1-1). python3-charset-normalizer is already the newest version (3.4.2-1). python3-charset-normalizer set to manually installed. libexpat1-dev is already the newest version (2.7.1-2). libexpat1-dev set to manually installed. binutils-gold is already the newest version (2.44-2). binutils-gold set to manually installed. python3-certifi is already the newest version (2025.1.31+ds-1). python3-certifi set to manually installed. gcc-15-base is already the newest version (15.2.0-1). libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. libjson-perl is already the newest version (4.10000-1). libjson-perl set to manually installed. libnghttp3-9 is already the newest version (1.8.0-1). libnghttp3-9 set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. python3-networkx is already the newest version (3.2.1-5). python3-networkx set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). libnorm1t64 is already the newest version (1.5.9+dfsg-3.1+b2). libnorm1t64 set to manually installed. g++-14 is already the newest version (14.3.0-5). g++-14 set to manually installed. libcom-err2 is already the newest version (1.47.2-3+b3). libcom-err2 set to manually installed. python3-pytest is already the newest version (8.3.5-2). python3-pytest set to manually installed. python3-scipy is already the newest version (1.15.3-1). python3-scipy set to manually installed. python3-alabaster is already the newest version (0.7.16-0.1). python3-alabaster set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. python3-tables-lib is already the newest version (3.10.2-2+b1). python3-tables-lib set to manually installed. python3-pandas-lib is already the newest version (2.2.3+dfsg-9). python3-pandas-lib set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. python3-jsonschema-specifications is already the newest version (2023.12.1-2). python3-jsonschema-specifications set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. libblkid1 is already the newest version (2.41-5). dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. base-passwd is already the newest version (3.6.7). python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. libgcc-14-dev is already the newest version (14.3.0-5). libgcc-14-dev set to manually installed. libgomp1 is already the newest version (15.2.0-1). libgomp1 set to manually installed. libbinutils is already the newest version (2.45-3). libbinutils set to manually installed. libcurl4t64 is already the newest version (8.15.0-1). libcurl4t64 set to manually installed. debianutils is already the newest version (5.23.2). libgcc-s1 is already the newest version (15.2.0-1). python3-platformdirs is already the newest version (4.3.7-1). python3-platformdirs set to manually installed. python-babel-localedata is already the newest version (2.17.0-1). python-babel-localedata set to manually installed. python3-urllib3 is already the newest version (2.3.0-3). python3-urllib3 set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. python3-imagesize is already the newest version (1.4.1-1). python3-imagesize set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-9). libsasl2-modules-db set to manually installed. m4 is already the newest version (1.4.19-8). m4 set to manually installed. automake is already the newest version (1:1.17-4). automake set to manually installed. libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1). libjs-jquery set to manually installed. python3-babel is already the newest version (2.17.0-1). python3-babel set to manually installed. python3-docutils is already the newest version (0.21.2+dfsg-2). python3-docutils set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. libsframe2 is already the newest version (2.45-3). libsframe2 set to manually installed. python3-html5lib is already the newest version (1.2-2). python3-html5lib set to manually installed. libpython3-all-dev is already the newest version (3.13.5-1). libpython3-all-dev set to manually installed. python3-cffi-backend is already the newest version (1.17.1-3). python3-cffi-backend set to manually installed. dpkg is already the newest version (1.22.21). binutils-common is already the newest version (2.45-3). binutils-common set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. libitm1 is already the newest version (15.2.0-1). libitm1 set to manually installed. python3-bs4 is already the newest version (4.13.4-2). python3-bs4 set to manually installed. python3-numpy is already the newest version (1:2.2.4+ds-1). python3-numpy set to manually installed. libudev1 is already the newest version (257.7-1). libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libbsd0 is already the newest version (0.12.2-2). libbsd0 set to manually installed. python3-nbsphinx-link is already the newest version (1.3.0-4). python3-nbsphinx-link set to manually installed. libpgm-5.3-0t64 is already the newest version (5.3.128~dfsg-2.1+b1). libpgm-5.3-0t64 set to manually installed. libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. gettext-base is already the newest version (0.23.1-2). gettext-base set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1). rpcsvc-proto set to manually installed. libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. libsnappy1v5 is already the newest version (1.2.2-1). libsnappy1v5 set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1.1). libnghttp2-14 set to manually installed. groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. perl-base is already the newest version (5.40.1-6). libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. python-tinycss2-common is already the newest version (1.4.0-2). python-tinycss2-common set to manually installed. liblzo2-2 is already the newest version (2.10-3+b1). liblzo2-2 set to manually installed. python3-psutil is already the newest version (7.0.0-2). python3-psutil set to manually installed. python3-dev is already the newest version (3.13.5-1). python3-dev set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). libcurl3t64-gnutls is already the newest version (8.15.0-1). libcurl3t64-gnutls set to manually installed. libzmq5 is already the newest version (4.3.5-1+b3). libzmq5 set to manually installed. python3-pytz is already the newest version (2025.2-3). python3-pytz set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. tzdata is already the newest version (2025b-4). tzdata set to manually installed. libatomic1 is already the newest version (15.2.0-1). libatomic1 set to manually installed. xml-core is already the newest version (0.19). xml-core set to manually installed. libblosc2-4 is already the newest version (2.17.1+ds-1). libblosc2-4 set to manually installed. libpam-modules is already the newest version (1.7.0-5). python3-typeguard is already the newest version (4.4.2-1). python3-typeguard set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. python3-all is already the newest version (3.13.5-1). python3-all set to manually installed. liblz4-1 is already the newest version (1.10.0-4). liblz4-1 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-9). libsasl2-2 set to manually installed. openssl is already the newest version (3.5.2-1). openssl set to manually installed. libc-bin is already the newest version (2.41-12). python3-sphinx is already the newest version (8.1.3-5). python3-sphinx set to manually installed. python3-all-dev is already the newest version (3.13.5-1). python3-all-dev set to manually installed. liblapack3 is already the newest version (3.12.1-6). liblapack3 set to manually installed. libaec0 is already the newest version (1.1.3-1+b1). libaec0 set to manually installed. python3-nbsphinx is already the newest version (0.9.5+ds-1). python3-nbsphinx set to manually installed. gcc-14-i686-linux-gnu is already the newest version (14.3.0-5). gcc-14-i686-linux-gnu set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. python3-snowballstemmer is already the newest version (3.0.1-1). python3-snowballstemmer set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. python3-packaging is already the newest version (25.0-1). python3-packaging set to manually installed. base-files is already the newest version (14). libdebconfclient0 is already the newest version (0.280). libblas3 is already the newest version (3.12.1-6). libblas3 set to manually installed. libhdf5-310 is already the newest version (1.14.5+repack-3). libhdf5-310 set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libselinux1 is already the newest version (3.8.1-1). bash is already the newest version (5.2.37-2+b5). python3-more-itertools is already the newest version (10.7.0-1). python3-more-itertools set to manually installed. libexpat1 is already the newest version (2.7.1-2). libexpat1 set to manually installed. python3-requests is already the newest version (2.32.3+dfsg-5). python3-requests set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. make is already the newest version (4.4.1-2). make set to manually installed. libubsan1 is already the newest version (15.2.0-1). libubsan1 set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. libdebhelper-perl is already the newest version (13.25). libdebhelper-perl set to manually installed. python3-iniconfig is already the newest version (1.1.1-2). python3-iniconfig set to manually installed. cpp-14-i686-linux-gnu is already the newest version (14.3.0-5). cpp-14-i686-linux-gnu set to manually installed. python3-versioneer is already the newest version (0.29-1). python3-versioneer set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. ncurses-base is already the newest version (6.5+20250216-2). libidn2-0 is already the newest version (2.3.8-2). libidn2-0 set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. autopoint is already the newest version (0.23.1-2). autopoint set to manually installed. python3.13-minimal is already the newest version (3.13.6-1). python3.13-minimal set to manually installed. libseccomp2 is already the newest version (2.6.0-2). libseccomp2 set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3). libjs-underscore set to manually installed. libctf-nobfd0 is already the newest version (2.45-3). libctf-nobfd0 set to manually installed. hostname is already the newest version (3.25). python3-traitlets is already the newest version (5.14.3+really5.14.3-1). python3-traitlets set to manually installed. g++-i686-linux-gnu is already the newest version (4:14.2.0-1). g++-i686-linux-gnu set to manually installed. python3-nbclient is already the newest version (0.8.0-2). python3-nbclient set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. python3 is already the newest version (3.13.5-1). python3 set to manually installed. libpython3-stdlib is already the newest version (3.13.5-1). libpython3-stdlib set to manually installed. python3-referencing is already the newest version (0.36.2-1). python3-referencing set to manually installed. debhelper is already the newest version (13.25). debhelper set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. mawk is already the newest version (1.3.4.20250131-1). liblastlog2-2 is already the newest version (2.41-5). python3-pyparsing is already the newest version (3.1.2-1). python3-pyparsing set to manually installed. libstdc++6 is already the newest version (15.2.0-1). libstdc++6 set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. libblosc1 is already the newest version (1.21.5+ds-1+b2). libblosc1 set to manually installed. python3-rpds-py is already the newest version (0.21.0-2+b1). python3-rpds-py set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-2.1). libxml2 set to manually installed. libgnutls30t64 is already the newest version (3.8.10-2). libgnutls30t64 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx (Reading database ... 34311 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.1pCzelvRCx... I: success in 132.6094 seconds Downloading dependency 262 of 308: libblas3:i386=3.12.1-6 Downloading dependency 263 of 308: libhdf5-310:i386=1.14.5+repack-3 Downloading dependency 264 of 308: libtasn1-6:i386=4.20.0-2 Downloading dependency 265 of 308: libselinux1:i386=3.8.1-1 Downloading dependency 266 of 308: bash:i386=5.2.37-2+b5 Downloading dependency 267 of 308: python3-more-itertools:i386=10.7.0-1 Downloading dependency 268 of 308: libexpat1:i386=2.7.1-2 Downloading dependency 269 of 308: python3-requests:i386=2.32.3+dfsg-5 Downloading dependency 270 of 308: libacl1:i386=2.3.2-2+b1 Downloading dependency 271 of 308: zlib1g-dev:i386=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 272 of 308: make:i386=4.4.1-2 Downloading dependency 273 of 308: libubsan1:i386=15.2.0-1 Downloading dependency 274 of 308: libmagic-mgc:i386=1:5.46-5 Downloading dependency 275 of 308: libdebhelper-perl:i386=13.25 Downloading dependency 276 of 308: python3-iniconfig:i386=1.1.1-2 Downloading dependency 277 of 308: cpp-14-i686-linux-gnu:i386=14.3.0-5 Downloading dependency 278 of 308: python3-versioneer:i386=0.29-1 Downloading dependency 279 of 308: build-essential:i386=12.12 Downloading dependency 280 of 308: libkrb5-3:i386=1.21.3-5 Downloading dependency 281 of 308: ncurses-base:i386=6.5+20250216-2 Downloading dependency 282 of 308: libidn2-0:i386=2.3.8-2 Downloading dependency 283 of 308: bzip2:i386=1.0.8-6 Downloading dependency 284 of 308: autopoint:i386=0.23.1-2 Downloading dependency 285 of 308: python3.13-minimal:i386=3.13.6-1 Downloading dependency 286 of 308: libseccomp2:i386=2.6.0-2 Downloading dependency 287 of 308: libldap2:i386=2.6.10+dfsg-1 Downloading dependency 288 of 308: libjs-underscore:i386=1.13.4~dfsg+~1.11.4-3 Downloading dependency 289 of 308: libctf-nobfd0:i386=2.45-3 Downloading dependency 290 of 308: hostname:i386=3.25 Downloading dependency 291 of 308: python3-traitlets:i386=5.14.3+really5.14.3-1 Downloading dependency 292 of 308: g++-i686-linux-gnu:i386=4:14.2.0-1 Downloading dependency 293 of 308: python3-nbclient:i386=0.8.0-2 Downloading dependency 294 of 308: libisl23:i386=0.27-1 Downloading dependency 295 of 308: python3:i386=3.13.5-1 Downloading dependency 296 of 308: libpython3-stdlib:i386=3.13.5-1 Downloading dependency 297 of 308: python3-referencing:i386=0.36.2-1 Downloading dependency 298 of 308: debhelper:i386=13.25 Downloading dependency 299 of 308: patch:i386=2.8-2 Downloading dependency 300 of 308: mawk:i386=1.3.4.20250131-1 Downloading dependency 301 of 308: liblastlog2-2:i386=2.41-5 Downloading dependency 302 of 308: python3-pyparsing:i386=3.1.2-1 Downloading dependency 303 of 308: libstdc++6:i386=15.2.0-1 Downloading dependency 304 of 308: libmpc3:i386=1.3.1-1+b3 Downloading dependency 305 of 308: libblosc1:i386=1.21.5+ds-1+b2 Downloading dependency 306 of 308: python3-rpds-py:i386=0.21.0-2+b1 Downloading dependency 307 of 308: libxml2:i386=2.12.7+dfsg+really2.9.14-2.1 Downloading dependency 308 of 308: libgnutls30t64:i386=3.8.10-2 env --chdir=/srv/rebuilderd/tmp/rebuilderdqkaNGk/out DEB_BUILD_OPTIONS=parallel=6 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1754933451 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildJprmms/debrebuild.sbuildrc.RkbDzSS6UNbC sbuild --build=i386 --host=i386 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildJprmms/debrebuild.tar.FIyd_EY_LOl1 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=mdtraj-1.11.0 /srv/rebuilderd/tmp/rebuilderdqkaNGk/inputs/mdtraj_1.11.0-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on infom08-amd64 +==============================================================================+ | mdtraj 1.11.0-1 (i386) Tue, 30 Sep 2025 08:35:57 +0000 | +==============================================================================+ Package: mdtraj Version: 1.11.0-1 Source Version: 1.11.0-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildJprmms/debrebuild.tar.FIyd_EY_LOl1 to /srv/rebuilderd/tmp/tmp.sbuild.v35dLeX5jm... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Tue, 30 Sep 2025 08:36:03 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdqkaNGk/inputs/mdtraj_1.11.0-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdqkaNGk/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Tue, 30 Sep 2025 08:36:04 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-nbsphinx-link, python3-netcdf4, python3-networkx, python3-packaging, python3-pandas, python3-pyparsing, python3-pytest, python3-pytest-rerunfailures, python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-nbsphinx-link, python3-netcdf4, python3-networkx, python3-packaging, python3-pandas, python3-pyparsing, python3-pytest, python3-pytest-rerunfailures, python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-5G4VkN/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Tue, 30 Sep 2025 08:36:07 +0000 | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any-amd64 arm64 i386 all) +------------------------------------------------------------------------------+ | Build environment Tue, 30 Sep 2025 08:36:07 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) amd64 (x86_64) Toolchain package versions: binutils_2.45-3 dpkg-dev_1.22.21 g++-14_14.3.0-5 gcc-14_14.3.0-5 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 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sphinx-common_8.1.3-5 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-4 util-linux_2.41-5 xml-core_0.19 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Tue, 30 Sep 2025 08:36:07 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mdtraj Binary: python3-mdtraj, python-mdtraj-doc Architecture: any-amd64 arm64 i386 all Version: 1.11.0-1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://mdtraj.org/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/mdtraj Vcs-Git: https://salsa.debian.org/debichem-team/mdtraj.git Testsuite: autopkgtest Testsuite-Triggers: python3-gsd, python3-ipykernel, python3-jupyter-client, python3-matplotlib, python3-nbformat, python3-netcdf4, python3-packaging, python3-pandas, python3-pytest, python3-pytest-rerunfailures, python3-sklearn Build-Depends: debhelper-compat (= 13), dh-sequence-python3, dh-sequence-numpy3, cython3, python3-setuptools, python3-all-dev, python3-gsd, python3-numpy (>= 2.0.0~), python3-scipy, python3-nbsphinx, python3-nbsphinx-link, python3-netcdf4, python3-networkx, python3-packaging , python3-pandas, python3-pyparsing, python3-pytest , python3-pytest-rerunfailures , python3-sphinx, python3-tables, python3-versioneer, libjs-mathjax Build-Depends-Indep: pandoc, python3-msmb-theme, python3-ipykernel, python3-jupyter-client, python3-matplotlib, python3-nbconvert, python3-nbformat, python3-numpydoc, python3-sklearn Package-List: python-mdtraj-doc deb doc optional arch=all python3-mdtraj deb python optional arch=any-amd64,arm64,i386 Checksums-Sha1: 21e669632e858df798f129cfeb9a9a3d31ccb394 22723159 mdtraj_1.11.0.orig.tar.gz 02855388782c2563201868a1910b1feb3b82b6b5 298656 mdtraj_1.11.0-1.debian.tar.xz 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test_increase_timeout.patch dpkg-source: info: applying openmm_version_skip.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=6 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1754933451 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package mdtraj dpkg-buildpackage: info: source version 1.11.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from mdtraj-1.11.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py clean Using built-in specs. COLLECT_GCC=/usr/bin/i686-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.3.0-5' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.3.0 (Debian 14.3.0-5) /build/reproducible-path/mdtraj-1.11.0/basesetup.py:483: UserWarning: Unrecognized setuptools command ('clean'), proceeding with generating Cython sources and expanding templates warnings.warn( warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.0' for f in mdtraj/formats/binpos/binpos.c \ mdtraj/formats/dcd/dcd.c \ mdtraj/formats/dtr/dtr.cpp \ mdtraj/formats/tng/tng.c \ mdtraj/formats/xtc/trr.c \ mdtraj/formats/xtc/xtc.c \ mdtraj/geometry/drid.cpp \ mdtraj/geometry/neighborlist.cpp \ mdtraj/geometry/neighbors.cpp \ mdtraj/geometry/src/_geometry.cpp \ mdtraj/rmsd/_lprmsd.cpp \ mdtraj/rmsd/_rmsd.cpp \ mdtraj/version.py; \ do rm -f $f; done rm -rf mdtraj/core/lib rm -rf docs/api/generated rm -rf __pycache__ .pybuild find . -name "lib*.a" -delete make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.11.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-mdtraj.substvars debian/python-mdtraj-doc.substvars debian/files rm -fr -- debian/python3-mdtraj/ debian/tmp/ debian/python-mdtraj-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py config Using built-in specs. COLLECT_GCC=/usr/bin/i686-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.3.0-5' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.3.0 (Debian 14.3.0-5) /build/reproducible-path/mdtraj-1.11.0/basesetup.py:483: UserWarning: Unrecognized setuptools command ('config'), proceeding with generating Cython sources and expanding templates warnings.warn( warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -a -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild base:311: /usr/bin/python3 setup.py build Using built-in specs. COLLECT_GCC=/usr/bin/i686-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.3.0-5' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.3.0 (Debian 14.3.0-5) warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/io.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats copying mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/pi_stacking.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core copying mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr copying mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils copying mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/pdbx.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/PdbxReader.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/PdbxContainers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/pdbxfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data UPDATING /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py set /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py to '1.11.0' running build_ext building 'mdtraj.formats.xtc' extension creating build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_xtc.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/xtc.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/xtc.c:1263: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/xtc.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.trr' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_trr.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/trr.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/trr.c:1265: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/trr.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.dcd' extension creating build/temp.linux-i686-cpython-313/mdtraj/formats/dcd creating build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/dcd.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/dcd.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dcd/dcd.c:1260: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/src/dcdplugin.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dcd/src/dcdplugin.c: In function ‘open_dcd_read’: mdtraj/formats/dcd/src/dcdplugin.c:903:14: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 903 | printf("dcdplugin) Warning: DCD header claims %d frames, but \n" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 906 | dcd->nsets, trjsize, newnsets, framesize); | ~~~~~~~ | | | fio_size_t {aka long long int} mdtraj/formats/dcd/src/dcdplugin.c:904:39: note: format string is defined here 904 | "dcdplugin) file size (%ld) indicates there are actually \n" | ~~^ | | | long int | %lld mdtraj/formats/dcd/src/dcdplugin.c:903:14: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 903 | printf("dcdplugin) Warning: DCD header claims %d frames, but \n" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 906 | dcd->nsets, trjsize, newnsets, framesize); | ~~~~~~~~~ | | | fio_size_t {aka long long int} mdtraj/formats/dcd/src/dcdplugin.c:905:36: note: format string is defined here 905 | "%d frames of size (%ld)\n", | ~~^ | | | long int | %lld i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/dcd.o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.dtr' extension creating build/temp.linux-i686-cpython-313/mdtraj/formats/dtr creating build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/dtr.cpp -o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/dtr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dtr/dtr.cpp:1279: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/src/dtrplugin.cxx -o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dtr/src/dtrplugin.cxx: In member function ‘bool desres::molfile::Timekeys::init(const std::string&)’: mdtraj/formats/dtr/src/dtrplugin.cxx:486:64: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 486 | fprintf(stderr, "non-constant framesize at frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx:487:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %lld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:487:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %lld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:494:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 494 | "non-constant time interval at frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx:499:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 499 | fprintf(stderr, "unexpected offset for frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘int handle_wrapped_v2({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)’: mdtraj/formats/dtr/src/dtrplugin.cxx:1301:69: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1301 | fprintf(stderr, "ERROR, Expected %d elements in POSITION; got %ld\n", | ~~^ | | | long int | %lld 1302 | 3*natoms, pos.count); | ~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:1310:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1310 | fprintf(stderr, "ERROR, Expected %d elements in VELOCITY; got %ld\n", | ~~^ | | | long int | %lld 1311 | 3*natoms, vel.count); | ~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)’: mdtraj/formats/dtr/src/dtrplugin.cxx:1572:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1572 | fprintf(stderr, "VELOCITY field has %ld values; expected %d\n", | ~~^ | | | long int | %lld 1573 | velblob.count, 3*natoms); | ~~~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:706:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 706 | sprintf(sub, "%03x/", i); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:706:22: note: directive argument in the range [0, 2147483646] 706 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from mdtraj/formats/dtr/include/molfile_plugin.h:35, from mdtraj/formats/dtr/include/dtrplugin.hxx:46, from mdtraj/formats/dtr/src/dtrplugin.cxx:42: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:706:9: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:714:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(subsub, "%03x", j); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:714:29: note: directive argument in the range [0, 2147483646] 714 | sprintf(subsub, "%03x", j); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:714:13: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:667:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 667 | sprintf(answer, "%03x/", d1); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:667:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:665:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function ‘std::string DDreldir(const std::string&, int, int)’, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: mdtraj/formats/dtr/src/dtrplugin.cxx:665:29: note: directive argument in the range [0, 2147483646] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:665:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/dtr.o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so building 'mdtraj._rmsd' extension creating build/temp.linux-i686-cpython-313/mdtraj/rmsd creating build/temp.linux-i686-cpython-313/mdtraj/rmsd/src i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_rmsd.cpp:1300: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/rmsd/_rmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so building 'mdtraj._lprmsd' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/_lprmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_lprmsd.cpp:1307: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/Munkres.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/fancy_index.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/rmsd/_lprmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/Munkres.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/fancy_index.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so building 'mdtraj.core.lib.libtheobald' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -msse2 -mssse3 -O3 -funroll-loops --std=c++11 i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -msse2 -mssse3 -O3 -funroll-loops --std=c++11 i686-linux-gnu-gcc-ar rcs /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o building 'mdtraj.geometry._geometry' extension creating build/temp.linux-i686-cpython-313/mdtraj/geometry/src i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/_geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/geometry/src/_geometry.cpp:1289: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dssp.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/sasa.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/src/_geometry.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dssp.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/geometry.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/sasa.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.drid' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/drid.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/drid.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dridkernels.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/moments.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/drid.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dridkernels.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/moments.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.neighbors' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/neighbors.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighbors.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.neighborlist' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/neighborlist.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighborlist.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so dh_auto_test -a -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.13 I: pybuild base:311: cd /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build; python3.13 -m pytest -k 'not (mdconvert or pi_stacking.ipynb or nmr.ipynb or test_image_molecules) and not (test_3 or test_pdb_from_url or test_1vii_url_and_gz)' ============================= test session starts ============================== platform linux -- Python 3.13.6, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build configfile: pyproject.toml testpaths: tests, examples plugins: rerunfailures-15.1, typeguard-4.4.2 collecting ... collected 1161 items / 22 deselected / 1139 selected tests/test_alignment.py::test_rmsd_zero PASSED [ 0%] tests/test_alignment.py::test_rmsd_nonzero PASSED [ 0%] tests/test_alignment.py::test_transform PASSED [ 0%] tests/test_alignment.py::test_transform2 PASSED [ 0%] tests/test_angles.py::test_angle_pbc_0 PASSED [ 0%] tests/test_angles.py::test_generator PASSED [ 0%] tests/test_angles.py::test_angle_180[True] PASSED [ 0%] tests/test_angles.py::test_angle_180[False] PASSED [ 0%] tests/test_arc.py::test_read_0 PASSED [ 0%] tests/test_arc.py::test_read_arctraj PASSED [ 0%] tests/test_arc.py::test_read_arctraj_top PASSED [ 0%] tests/test_arc.py::test_read_pbc PASSED [ 1%] tests/test_capi.py::test_1 PASSED [ 1%] tests/test_contact.py::test_contact_0 PASSED [ 1%] tests/test_contact.py::test_contact_1 PASSED [ 1%] tests/test_contact.py::test_contact_2 PASSED [ 1%] tests/test_contact.py::test_contact_3 PASSED [ 1%] tests/test_contact.py::test_contact_4 PASSED [ 1%] tests/test_crd.py::test_prmtop_with_overflow_mdcrd PASSED [ 1%] tests/test_dcd.py::test_read PASSED [ 1%] tests/test_dcd.py::test_read_2 PASSED [ 1%] tests/test_dcd.py::test_read_stride PASSED [ 1%] tests/test_dcd.py::test_read_stride_2 PASSED [ 2%] tests/test_dcd.py::test_read_3 PASSED [ 2%] tests/test_dcd.py::test_read_4 PASSED [ 2%] tests/test_dcd.py::test_read_5 PASSED [ 2%] tests/test_dcd.py::test_read_6 PASSED [ 2%] tests/test_dcd.py::test_write_0 PASSED [ 2%] tests/test_dcd.py::test_write_1 PASSED [ 2%] tests/test_dcd.py::test_write_2 PASSED [ 2%] tests/test_dcd.py::test_write_3 PASSED [ 2%] tests/test_dcd.py::test_write_4 PASSED [ 2%] tests/test_dcd.py::test_do_overwrite PASSED [ 2%] tests/test_dcd.py::test_dont_overwrite PASSED [ 2%] tests/test_dcd.py::test_read_closed PASSED [ 3%] tests/test_dcd.py::test_write_closed PASSED [ 3%] tests/test_dcd.py::test_tell PASSED [ 3%] tests/test_dcd.py::test_seek PASSED [ 3%] tests/test_dcd.py::test_ragged_1 PASSED [ 3%] tests/test_dcd.py::test_ragged_2 PASSED [ 3%] tests/test_dihedral.py::test_compute_phi PASSED [ 3%] tests/test_dihedral.py::test_compute_psi PASSED [ 3%] tests/test_dihedral.py::test_compute_chi SKIPPED (pymol executable n...) [ 3%] tests/test_dihedral.py::test_compute_omega PASSED [ 3%] tests/test_dihedral.py::test_shape_when_none PASSED [ 3%] tests/test_dihedral.py::test_dihedral_1 SKIPPED (pymol executable no...) [ 4%] tests/test_dihedral.py::test_dihedral_2chains PASSED [ 4%] tests/test_dihedral.py::test_generator PASSED [ 4%] tests/test_distance.py::Test_Distance::test_generator PASSED [ 4%] tests/test_distance.py::Test_Distance::test_0 PASSED [ 4%] tests/test_distance.py::Test_Distance::test_compute_distances_core_nonperiodic PASSED [ 4%] tests/test_distance.py::Test_Distance::test_compute_distances_core_periodic PASSED [ 4%] tests/test_distance.py::Test_Distance::test_1 PASSED [ 4%] tests/test_distance.py::Test_Distance::test_2 PASSED [ 4%] tests/test_distance.py::Test_Distance::test_0p PASSED [ 4%] tests/test_distance.py::Test_Distance::test_1p PASSED [ 4%] tests/test_distance.py::Test_Distance::test_2p PASSED [ 5%] tests/test_distance.py::Test_Distance::test_4 PASSED [ 5%] tests/test_distance.py::Test_Distance::test_5 PASSED [ 5%] tests/test_distance.py::Test_Distance::test_6 PASSED [ 5%] tests/test_distance.py::Test_Distance::test_7 PASSED [ 5%] tests/test_distance.py::Test_Distance::test_closest_contact PASSED [ 5%] tests/test_distance.py::Test_Distance::test_distance_nan PASSED [ 5%] tests/test_distance.py::Test_Distance::test_closest_contact_nan_pos PASSED [ 5%] tests/test_distance.py::Test_Distance::test_distance_t_inputs PASSED [ 5%] tests/test_distance.py::Test_Distance::test_distances_t PASSED [ 5%] tests/test_distance.py::Test_Distance::test_distances_t_at_0 PASSED [ 5%] tests/test_distance.py::Test_Distance::test_amber_t PASSED [ 5%] tests/test_docstrings.py::test_docstrings[mdtraj._lprmsd] PASSED [ 6%] tests/test_docstrings.py::test_docstrings[mdtraj._rmsd] PASSED [ 6%] tests/test_docstrings.py::test_docstrings[mdtraj._version] SKIPPED (...) 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tests/test_mol2.py::test_mol2_element_name PASSED [ 26%] tests/test_mol2.py::test_load_all_mol2[li.mol2] PASSED [ 27%] tests/test_mol2.py::test_load_all_mol2[lysozyme-ligand-tripos.mol2] PASSED [ 27%] tests/test_mol2.py::test_load_all_mol2[imatinib.mol2] PASSED [ 27%] tests/test_mol2.py::test_load_all_mol2[status-bits.mol2] PASSED [ 27%] tests/test_mol2.py::test_load_all_mol2[adp.mol2] PASSED [ 27%] tests/test_mol2.py::test_load_all_mol2[water_acn.mol2] PASSED [ 27%] tests/test_mol2.py::test_mol2_n_residues PASSED [ 27%] tests/test_neighborlist.py::test_nonperiodic PASSED [ 27%] tests/test_neighborlist.py::test_periodic PASSED [ 27%] tests/test_neighborlist.py::test_triclinic PASSED [ 27%] tests/test_neighbors.py::test_compute_neighbors_1 PASSED [ 27%] tests/test_neighbors.py::test_compute_neighbors_2 PASSED [ 28%] tests/test_neighbors.py::test_compute_neighbors_3 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_read_after_close PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_shape PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_read_chunk_1 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_read_chunk_2 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_read_chunk_3 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_read_write_1 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_read_write_2 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_ragged_1 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_ragged_2 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_read_write_25 PASSED [ 28%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_write_3 PASSED [ 29%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_n_atoms PASSED [ 29%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_do_overwrite PASSED [ 29%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_do_not_overwrite PASSED [ 29%] tests/test_netcdf.py::TestNetCDFNetCDF4::test_trajectory_save_load PASSED [ 29%] tests/test_netcdf.py::TestNetCDFScipy::test_read_after_close PASSED [ 29%] tests/test_netcdf.py::TestNetCDFScipy::test_shape PASSED [ 29%] tests/test_netcdf.py::TestNetCDFScipy::test_read_chunk_1 PASSED [ 29%] tests/test_netcdf.py::TestNetCDFScipy::test_read_chunk_2 PASSED [ 29%] tests/test_netcdf.py::TestNetCDFScipy::test_read_chunk_3 PASSED [ 29%] tests/test_netcdf.py::TestNetCDFScipy::test_read_write_1 PASSED [ 29%] tests/test_netcdf.py::TestNetCDFScipy::test_read_write_2 PASSED [ 30%] tests/test_netcdf.py::TestNetCDFScipy::test_ragged_1 PASSED [ 30%] tests/test_netcdf.py::TestNetCDFScipy::test_ragged_2 PASSED [ 30%] tests/test_netcdf.py::TestNetCDFScipy::test_read_write_25 PASSED [ 30%] tests/test_netcdf.py::TestNetCDFScipy::test_write_3 PASSED [ 30%] tests/test_netcdf.py::TestNetCDFScipy::test_n_atoms PASSED [ 30%] tests/test_netcdf.py::TestNetCDFScipy::test_do_overwrite PASSED [ 30%] tests/test_netcdf.py::TestNetCDFScipy::test_do_not_overwrite PASSED [ 30%] tests/test_netcdf.py::TestNetCDFScipy::test_trajectory_save_load PASSED [ 30%] tests/test_netcdf.py::test_cpptraj SKIPPED (This test requires cpptr...) [ 30%] tests/test_nmr.py::test_spartaplus SKIPPED (SPARTA+ binary not found) [ 30%] tests/test_nmr.py::test_ppm SKIPPED (PPM binary not found) [ 30%] tests/test_nmr.py::test_shiftx2 SKIPPED (SHIFTX2 binary not found or...) [ 31%] tests/test_nmr.py::test_2_scalar_couplings PASSED [ 31%] tests/test_order.py::test_nematic_order PASSED [ 31%] tests/test_order.py::test_director PASSED [ 31%] tests/test_order.py::test_inertia PASSED [ 31%] tests/test_order.py::test_nematic_order_args PASSED [ 31%] tests/test_order.py::test_order_from_traj PASSED [ 31%] tests/test_order.py::test_directors_angle_from_traj PASSED [ 31%] tests/test_pdb.py::test_pdbread PASSED [ 31%] tests/test_pdb.py::test_pdbread_with_input_top PASSED [ 31%] tests/test_pdb.py::test_pdbwrite PASSED [ 31%] tests/test_pdb.py::test_load_multiframe PASSED [ 32%] tests/test_pdb.py::test_4ZUO PASSED [ 32%] tests/test_pdb.py::test_2EQQ_0 PASSED [ 32%] tests/test_pdb.py::test_1vii_solvated_with_ligand PASSED [ 32%] tests/test_pdb.py::test_write_large PASSED [ 32%] tests/test_pdb.py::test_write_large_2 PASSED [ 32%] tests/test_pdb.py::test_pdbstructure_0 PASSED [ 32%] tests/test_pdb.py::test_pdbstructure_1 PASSED [ 32%] tests/test_pdb.py::test_pdbstructure_2 PASSED [ 32%] tests/test_pdb.py::test_pdbstructure_3 PASSED [ 32%] tests/test_pdb.py::test_1ncw PASSED [ 32%] tests/test_pdb.py::test_segment_id PASSED [ 33%] tests/test_pdb.py::test_bfactors PASSED [ 33%] tests/test_pdb.py::test_hex PASSED [ 33%] tests/test_pdb.py::test_dummy_pdb_box_detection PASSED [ 33%] tests/test_pdb.py::test_multichain_load_cycle PASSED [ 33%] tests/test_pdb.py::test_multichain_load_cycle_noter PASSED [ 33%] tests/test_pdb.py::test_load_pdb_input_top PASSED [ 33%] tests/test_pdb.py::test_chimera_indexing PASSED [ 33%] tests/test_pdb.py::test_chimera_indexing_skip PASSED [ 33%] tests/test_pdb.py::test_vmd_indexing PASSED [ 33%] tests/test_pdb.py::test_overflow_indexing PASSED [ 33%] tests/test_pdb.py::test_blank_indexing PASSED [ 33%] tests/test_pdb.py::test_pdb_charge_read PASSED [ 34%] tests/test_pdb.py::test_pdb_charge_write PASSED [ 34%] tests/test_pdbx.py::test_convert PASSED [ 34%] tests/test_pdbx.py::test_load_pdbx_file PASSED [ 34%] tests/test_pdbx.py::test_write_and_read_pdbx PASSED [ 34%] tests/test_pdbx.py::test_write_and_read_pdbx_4py5 PASSED [ 34%] tests/test_pdbx.py::test_residue_selection_from_cif PASSED [ 34%] tests/test_pi_stacking.py::test_pi_stacking PASSED [ 34%] tests/test_pi_stacking.py::test_t_stacking_more_relaxed_radius PASSED [ 34%] tests/test_pi_stacking.py::test_t_stacking_default_settings PASSED [ 34%] tests/test_prmtop.py::test_load_prmtop PASSED [ 34%] tests/test_prmtop.py::test_load_chamber_prmtop PASSED [ 35%] tests/test_psf.py::test_load_psf PASSED [ 35%] tests/test_psf.py::test_multichain_psf PASSED [ 35%] tests/test_psf.py::test_load_mdcrd_with_psf PASSED [ 35%] tests/test_psf.py::test_against_vmd[1vii.pdb] SKIPPED (This test req...) [ 35%] tests/test_psf.py::test_against_vmd[2EQQ.pdb] SKIPPED (This test req...) [ 35%] tests/test_quaternion.py::test_quaternion_0 PASSED [ 35%] tests/test_quaternion.py::test_quaternion_1 PASSED [ 35%] tests/test_quaternion.py::test_quaternion_2 PASSED [ 35%] tests/test_rdf.py::test_rdf_norm PASSED [ 35%] tests/test_rdf.py::test_compare_rdf_to_gromacs SKIPPED (Binning does...) [ 35%] tests/test_rdf.py::test_rdf_t[True-True] PASSED [ 35%] tests/test_rdf.py::test_rdf_t[True-False] PASSED [ 36%] tests/test_rdf.py::test_rdf_t[False-True] PASSED [ 36%] tests/test_rdf.py::test_rdf_t[False-False] PASSED [ 36%] tests/test_rdf.py::test_rdf_t_norm[0] PASSED [ 36%] tests/test_rdf.py::test_rdf_t_norm[2] PASSED [ 36%] tests/test_rdf.py::test_rdf_t_norm[4] PASSED [ 36%] tests/test_rdf.py::test_compare_rdf_t_at_0[True-True] PASSED [ 36%] tests/test_rdf.py::test_compare_rdf_t_at_0[True-False] PASSED [ 36%] tests/test_rdf.py::test_compare_rdf_t_at_0[False-True] PASSED [ 36%] tests/test_rdf.py::test_compare_rdf_t_at_0[False-False] PASSED [ 36%] tests/test_rdf.py::test_amber_rdf_t[True-True] PASSED [ 36%] tests/test_rdf.py::test_amber_rdf_t[True-False] PASSED [ 37%] tests/test_rdf.py::test_amber_rdf_t[False-True] PASSED [ 37%] tests/test_rdf.py::test_amber_rdf_t[False-False] PASSED [ 37%] tests/test_rdf.py::test_compare_gromacs_rdf_t SKIPPED (Binning does ...) [ 37%] tests/test_rdf.py::test_compare_rdf_t_master PASSED [ 37%] tests/test_rdf.py::test_compare_n_concurrent_pairs PASSED [ 37%] tests/test_reporter.py::test_reporter SKIPPED (test_reporter.py need...) [ 37%] tests/test_reporter.py::test_reporter_subset SKIPPED (test_reporter....) [ 37%] tests/test_reporter.py::test_xtc_reporter_append SKIPPED (test_repor...) [ 37%] tests/test_restart.py::test_read_after_close PASSED [ 37%] tests/test_restart.py::test_shape PASSED [ 37%] tests/test_restart.py::test_shape_2 PASSED [ 38%] tests/test_restart.py::test_read_write_1 PASSED [ 38%] tests/test_restart.py::test_read_write_2 PASSED [ 38%] tests/test_restart.py::test_read_write_3 PASSED [ 38%] tests/test_restart.py::test_read_write_4 PASSED [ 38%] tests/test_rmsd.py::test_trajectory_rmsd[superpose-parallel] PASSED [ 38%] tests/test_rmsd.py::test_trajectory_rmsd[superpose-serial] PASSED [ 38%] tests/test_rmsd.py::test_trajectory_rmsd[qcp-parallel] PASSED [ 38%] tests/test_rmsd.py::test_trajectory_rmsd[qcp-serial] PASSED [ 38%] tests/test_rmsd.py::test_precentered_1 PASSED [ 38%] tests/test_rmsd.py::test_precentered_2 PASSED [ 38%] tests/test_rmsd.py::test_superpose_0 PASSED [ 38%] tests/test_rmsd.py::test_superpose_1 PASSED [ 39%] tests/test_rmsd.py::test_superpose_2 PASSED [ 39%] tests/test_rmsd.py::test_superpose_refinds PASSED [ 39%] tests/test_rmsd.py::test_rmsd_atom_indices PASSED [ 39%] tests/test_rmsd.py::test_rmsd_ref_ainds_superpose[superpose] PASSED [ 39%] tests/test_rmsd.py::test_rmsd_ref_ainds_superpose[qcp] PASSED [ 39%] tests/test_rmsd.py::test_average_structure PASSED [ 39%] tests/test_rmsd.py::test_trajectory_rmsf PASSED [ 39%] tests/test_rmsd.py::test_trajectory_rmsf_aligned PASSED [ 39%] tests/test_rmsd.py::test_rmsd_atom_indices_vs_ref_indices PASSED [ 39%] tests/test_rmsd_memmap.py::test_1 PASSED [ 39%] tests/test_rmsd_memmap.py::test_2 PASSED [ 40%] tests/test_sasa.py::test_sasa_0 PASSED [ 40%] tests/test_sasa.py::test_sasa_1 PASSED [ 40%] tests/test_sasa.py::test_sasa_2 PASSED [ 40%] tests/test_sasa.py::test_sasa_3 PASSED [ 40%] tests/test_sasa.py::test_sasa_4 PASSED [ 40%] tests/test_sasa.py::test_sasa_5 PASSED [ 40%] tests/test_sasa.py::test_sasa_6 PASSED [ 40%] tests/test_sasa.py::test_sasa_7 PASSED [ 40%] tests/test_selection.py::test_range PASSED [ 40%] tests/test_selection.py::test_unary_2 PASSED [ 40%] tests/test_selection.py::test_unary_3 PASSED [ 41%] tests/test_selection.py::test_binary_1 PASSED [ 41%] tests/test_selection.py::test_binary_2 PASSED [ 41%] tests/test_selection.py::test_simple PASSED [ 41%] tests/test_selection.py::test_alias PASSED [ 41%] tests/test_selection.py::test_unary_1 PASSED [ 41%] tests/test_selection.py::test_binary_selection_operator PASSED [ 41%] tests/test_selection.py::test_raises PASSED [ 41%] tests/test_selection.py::test_raises2 PASSED [ 41%] tests/test_selection.py::test_bool PASSED [ 41%] tests/test_selection.py::test_nested_bool PASSED [ 41%] tests/test_selection.py::test_values PASSED [ 41%] tests/test_selection.py::test_element PASSED [ 42%] tests/test_selection.py::test_not PASSED [ 42%] tests/test_selection.py::test_re PASSED [ 42%] tests/test_selection.py::test_within SKIPPED (failed to parse selection) [ 42%] tests/test_selection.py::test_quotes PASSED [ 42%] tests/test_selection.py::test_top PASSED [ 42%] tests/test_selection.py::test_top_2 PASSED [ 42%] tests/test_selection.py::test_backbone PASSED [ 42%] tests/test_selection.py::test_sidechain PASSED [ 42%] tests/test_selection.py::test_literal PASSED [ 42%] tests/test_selection.py::test_in PASSED [ 42%] tests/test_shape.py::test_gyration PASSED [ 43%] tests/test_shape.py::test_principal_moments PASSED [ 43%] tests/test_shape.py::test_asphericity PASSED [ 43%] tests/test_shape.py::test_shape_metrics PASSED [ 43%] tests/test_thermodynamic_properties.py::test_volume PASSED [ 43%] tests/test_thermodynamic_properties.py::test_density PASSED [ 43%] tests/test_thermodynamic_properties.py::test_dipole_moments PASSED [ 43%] tests/test_thermodynamic_properties.py::test_static_dielectric PASSED [ 43%] tests/test_thermodynamic_properties.py::test_kappa PASSED [ 43%] tests/test_thermodynamic_properties.py::test_alpha SKIPPED (Thermal ...) [ 43%] tests/test_topology.py::test_topology_openmm SKIPPED (needs OpenMM) [ 43%] tests/test_topology.py::test_topology_openmm_preserve_chain_id_when_specified SKIPPED [ 43%] tests/test_topology.py::test_topology_openmm_roundtrip_chain_id SKIPPED [ 44%] tests/test_topology.py::test_topology_openmm_preserve_chain_id_even_when_empty SKIPPED [ 44%] tests/test_topology.py::test_topology_openmm_boxes SKIPPED (needs Op...) [ 44%] tests/test_topology.py::test_topology_openmm_formal_charges SKIPPED [ 44%] tests/test_topology.py::test_topology_dataframe_formal_charges PASSED [ 44%] tests/test_topology.py::test_topology_pandas PASSED [ 44%] tests/test_topology.py::test_topology_pandas_TIP4PEW PASSED [ 44%] tests/test_topology.py::test_topology_pandas_2residues_same_resSeq PASSED [ 44%] tests/test_topology.py::test_topology_numbers PASSED [ 44%] tests/test_topology.py::test_topology_unique_elements_bpti PASSED [ 44%] tests/test_topology.py::test_chain PASSED [ 44%] tests/test_topology.py::test_residue PASSED [ 45%] tests/test_topology.py::test_segment_id PASSED [ 45%] tests/test_topology.py::test_nonconsective_resSeq PASSED [ 45%] tests/test_topology.py::test_pickle PASSED [ 45%] tests/test_topology.py::test_atoms_by_name PASSED [ 45%] tests/test_topology.py::test_select_atom_indices PASSED [ 45%] tests/test_topology.py::test_top_dataframe_openmm_roundtrip SKIPPED [ 45%] tests/test_topology.py::test_n_bonds PASSED [ 45%] tests/test_topology.py::test_load_unknown_topology PASSED [ 45%] tests/test_topology.py::test_unique_pairs PASSED [ 45%] tests/test_topology.py::test_select_pairs PASSED [ 45%] tests/test_topology.py::test_to_fasta PASSED [ 46%] tests/test_topology.py::test_subset PASSED [ 46%] tests/test_topology.py::test_subset_re_index_residues PASSED [ 46%] tests/test_topology.py::test_molecules PASSED [ 46%] tests/test_topology.py::test_copy_and_hash PASSED [ 46%] tests/test_topology.py::test_copy[traj.h5] PASSED [ 46%] tests/test_topology.py::test_copy[1ply_charge.pdb] PASSED [ 46%] tests/test_topology.py::test_topology_sliced_residue_indices PASSED [ 46%] tests/test_topology.py::test_topology_join PASSED [ 46%] tests/test_topology.py::test_topology_join_keep_resSeq PASSED [ 46%] tests/test_topology.py::test_topology_join_formal_charge PASSED [ 46%] tests/test_topology.py::test_delete_atom_by_index PASSED [ 46%] tests/test_trajectory.py::test_mismatch PASSED [ 47%] tests/test_trajectory.py::test_box PASSED [ 47%] tests/test_trajectory.py::test_load_pdb_box PASSED [ 47%] tests/test_trajectory.py::test_load_pdb_gz PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[nc] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[h5] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[xtc] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[trr] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[dcd] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[mdcrd] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[dtr] PASSED [ 47%] tests/test_trajectory.py::test_box_load_save[xyz] SKIPPED (xyz does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[xyz.gz] SKIPPED (xyz.gz...) [ 48%] tests/test_trajectory.py::test_box_load_save[lammpstrj] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[lh5] SKIPPED (lh5 does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[pdb] SKIPPED (pdb does ...) [ 48%] tests/test_trajectory.py::test_box_load_save[pdb.gz] SKIPPED (pdb.gz...) [ 48%] tests/test_trajectory.py::test_box_load_save[ncrst] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[rst7] PASSED [ 48%] tests/test_trajectory.py::test_box_load_save[gro] PASSED [ 48%] tests/test_trajectory.py::test_slice PASSED [ 48%] tests/test_trajectory.py::test_slice2 PASSED [ 48%] tests/test_trajectory.py::test_read_path[nc] PASSED [ 48%] tests/test_trajectory.py::test_read_path[h5] PASSED [ 49%] tests/test_trajectory.py::test_read_path[xtc] PASSED [ 49%] tests/test_trajectory.py::test_read_path[trr] PASSED [ 49%] tests/test_trajectory.py::test_read_path[dcd] PASSED [ 49%] tests/test_trajectory.py::test_read_path[mdcrd] PASSED [ 49%] tests/test_trajectory.py::test_read_path[dtr] PASSED [ 49%] tests/test_trajectory.py::test_read_path[xyz] PASSED [ 49%] tests/test_trajectory.py::test_read_path[xyz.gz] PASSED [ 49%] tests/test_trajectory.py::test_read_path[lammpstrj] PASSED [ 49%] tests/test_trajectory.py::test_read_path[lh5] PASSED [ 49%] tests/test_trajectory.py::test_read_path[pdb] PASSED [ 49%] tests/test_trajectory.py::test_read_path[pdb.gz] PASSED [ 50%] tests/test_trajectory.py::test_read_path[ncrst] XFAIL (These referen...) [ 50%] tests/test_trajectory.py::test_read_path[rst7] XFAIL (These referenc...) [ 50%] tests/test_trajectory.py::test_read_path[gro] PASSED [ 50%] tests/test_trajectory.py::test_write_path[nc] PASSED [ 50%] tests/test_trajectory.py::test_write_path[h5] PASSED [ 50%] tests/test_trajectory.py::test_write_path[xtc] PASSED [ 50%] tests/test_trajectory.py::test_write_path[trr] PASSED [ 50%] tests/test_trajectory.py::test_write_path[dcd] PASSED [ 50%] tests/test_trajectory.py::test_write_path[mdcrd] SKIPPED (mdcrd can ...) [ 50%] tests/test_trajectory.py::test_write_path[dtr] PASSED [ 50%] tests/test_trajectory.py::test_write_path[xyz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[xyz.gz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[lammpstrj] PASSED [ 51%] tests/test_trajectory.py::test_write_path[lh5] PASSED [ 51%] tests/test_trajectory.py::test_write_path[pdb] PASSED [ 51%] tests/test_trajectory.py::test_write_path[pdb.gz] PASSED [ 51%] tests/test_trajectory.py::test_write_path[ncrst] SKIPPED (ncrst can ...) [ 51%] tests/test_trajectory.py::test_write_path[rst7] SKIPPED (rst7 can on...) [ 51%] tests/test_trajectory.py::test_write_path[gro] PASSED [ 51%] tests/test_trajectory.py::test_read_write[nc-nc] PASSED [ 51%] tests/test_trajectory.py::test_read_write[nc-h5] PASSED [ 51%] tests/test_trajectory.py::test_read_write[nc-xtc] PASSED [ 51%] tests/test_trajectory.py::test_read_write[nc-trr] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-dcd] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-mdcrd] SKIPPED (mdcrd c...) [ 52%] tests/test_trajectory.py::test_read_write[nc-dtr] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-xyz] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-xyz.gz] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-lammpstrj] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-lh5] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-pdb] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-pdb.gz] PASSED [ 52%] tests/test_trajectory.py::test_read_write[nc-ncrst] SKIPPED (ncrst c...) [ 52%] tests/test_trajectory.py::test_read_write[nc-rst7] SKIPPED (rst7 can...) [ 53%] tests/test_trajectory.py::test_read_write[nc-gro] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-nc] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-h5] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-xtc] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-trr] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-dcd] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-mdcrd] SKIPPED (mdcrd c...) [ 53%] tests/test_trajectory.py::test_read_write[h5-dtr] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-xyz] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-xyz.gz] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-lammpstrj] PASSED [ 53%] tests/test_trajectory.py::test_read_write[h5-lh5] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-pdb] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-pdb.gz] PASSED [ 54%] tests/test_trajectory.py::test_read_write[h5-ncrst] SKIPPED (ncrst c...) [ 54%] tests/test_trajectory.py::test_read_write[h5-rst7] SKIPPED (rst7 can...) [ 54%] tests/test_trajectory.py::test_read_write[h5-gro] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-nc] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-h5] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-xtc] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-trr] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-dcd] PASSED [ 54%] tests/test_trajectory.py::test_read_write[xtc-mdcrd] SKIPPED (mdcrd ...) [ 55%] tests/test_trajectory.py::test_read_write[xtc-dtr] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-xyz] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-xyz.gz] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-lammpstrj] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-lh5] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-pdb] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-pdb.gz] PASSED [ 55%] tests/test_trajectory.py::test_read_write[xtc-ncrst] SKIPPED (ncrst ...) [ 55%] tests/test_trajectory.py::test_read_write[xtc-rst7] SKIPPED (rst7 ca...) [ 55%] tests/test_trajectory.py::test_read_write[xtc-gro] PASSED [ 55%] tests/test_trajectory.py::test_read_write[trr-nc] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-h5] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-xtc] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-trr] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-dcd] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-mdcrd] SKIPPED (mdcrd ...) [ 56%] tests/test_trajectory.py::test_read_write[trr-dtr] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-xyz] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-xyz.gz] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-lammpstrj] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-lh5] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-pdb] PASSED [ 56%] tests/test_trajectory.py::test_read_write[trr-pdb.gz] PASSED [ 57%] tests/test_trajectory.py::test_read_write[trr-ncrst] SKIPPED (ncrst ...) [ 57%] tests/test_trajectory.py::test_read_write[trr-rst7] SKIPPED (rst7 ca...) [ 57%] tests/test_trajectory.py::test_read_write[trr-gro] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-nc] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-h5] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-xtc] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-trr] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-dcd] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-mdcrd] SKIPPED (mdcrd ...) [ 57%] tests/test_trajectory.py::test_read_write[dcd-dtr] PASSED [ 57%] tests/test_trajectory.py::test_read_write[dcd-xyz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-xyz.gz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-lammpstrj] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-lh5] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-pdb] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-pdb.gz] PASSED [ 58%] tests/test_trajectory.py::test_read_write[dcd-ncrst] SKIPPED (ncrst ...) [ 58%] tests/test_trajectory.py::test_read_write[dcd-rst7] SKIPPED (rst7 ca...) [ 58%] tests/test_trajectory.py::test_read_write[dcd-gro] PASSED [ 58%] tests/test_trajectory.py::test_read_write[mdcrd-nc] PASSED [ 58%] tests/test_trajectory.py::test_read_write[mdcrd-h5] PASSED [ 58%] tests/test_trajectory.py::test_read_write[mdcrd-xtc] PASSED [ 58%] tests/test_trajectory.py::test_read_write[mdcrd-trr] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-dcd] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-mdcrd] SKIPPED (mdcr...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-dtr] SKIPPED (dtr ne...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-xyz] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-xyz.gz] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-lammpstrj] SKIPPED (...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-lh5] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-pdb] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-pdb.gz] PASSED [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-ncrst] SKIPPED (ncrs...) [ 59%] tests/test_trajectory.py::test_read_write[mdcrd-rst7] SKIPPED (rst7 ...) [ 60%] tests/test_trajectory.py::test_read_write[mdcrd-gro] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-nc] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-h5] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-xtc] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-trr] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-dcd] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-mdcrd] SKIPPED (mdcrd ...) [ 60%] tests/test_trajectory.py::test_read_write[dtr-dtr] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-xyz] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-xyz.gz] PASSED [ 60%] tests/test_trajectory.py::test_read_write[dtr-lammpstrj] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-lh5] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-pdb] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-pdb.gz] PASSED [ 61%] tests/test_trajectory.py::test_read_write[dtr-ncrst] SKIPPED (ncrst ...) [ 61%] tests/test_trajectory.py::test_read_write[dtr-rst7] SKIPPED (rst7 ca...) [ 61%] tests/test_trajectory.py::test_read_write[dtr-gro] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-nc] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-h5] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-xtc] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-trr] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-dcd] PASSED [ 61%] tests/test_trajectory.py::test_read_write[xyz-mdcrd] SKIPPED (mdcrd ...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-dtr] SKIPPED (dtr need...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-xyz] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-xyz.gz] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-lammpstrj] SKIPPED (la...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-lh5] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-pdb] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-pdb.gz] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz-ncrst] SKIPPED (ncrst ...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-rst7] SKIPPED (rst7 ca...) [ 62%] tests/test_trajectory.py::test_read_write[xyz-gro] PASSED [ 62%] tests/test_trajectory.py::test_read_write[xyz.gz-nc] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-h5] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-xtc] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-trr] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-dcd] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-mdcrd] SKIPPED (mdc...) [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-dtr] SKIPPED (dtr n...) [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-xyz] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-xyz.gz] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-lammpstrj] SKIPPED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-lh5] PASSED [ 63%] tests/test_trajectory.py::test_read_write[xyz.gz-pdb] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-pdb.gz] PASSED [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-ncrst] SKIPPED (ncr...) [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-rst7] SKIPPED (rst7...) [ 64%] tests/test_trajectory.py::test_read_write[xyz.gz-gro] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-nc] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-h5] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-xtc] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-trr] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-dcd] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-mdcrd] SKIPPED (...) [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-dtr] PASSED [ 64%] tests/test_trajectory.py::test_read_write[lammpstrj-xyz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-xyz.gz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-lammpstrj] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-lh5] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-pdb] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-pdb.gz] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-ncrst] SKIPPED (...) [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-rst7] SKIPPED (r...) [ 65%] tests/test_trajectory.py::test_read_write[lammpstrj-gro] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lh5-nc] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lh5-h5] PASSED [ 65%] tests/test_trajectory.py::test_read_write[lh5-xtc] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-trr] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-dcd] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-mdcrd] SKIPPED (mdcrd ...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-dtr] SKIPPED (dtr need...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-xyz] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-xyz.gz] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-lammpstrj] SKIPPED (la...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-lh5] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-pdb] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-pdb.gz] PASSED [ 66%] tests/test_trajectory.py::test_read_write[lh5-ncrst] SKIPPED (ncrst ...) [ 66%] tests/test_trajectory.py::test_read_write[lh5-rst7] SKIPPED (rst7 ca...) [ 67%] tests/test_trajectory.py::test_read_write[lh5-gro] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-nc] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-h5] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-xtc] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-trr] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-dcd] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-mdcrd] SKIPPED (mdcrd ...) [ 67%] tests/test_trajectory.py::test_read_write[pdb-dtr] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-xyz] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-xyz.gz] PASSED [ 67%] tests/test_trajectory.py::test_read_write[pdb-lammpstrj] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-lh5] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-pdb] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-pdb.gz] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb-ncrst] SKIPPED (ncrst ...) [ 68%] tests/test_trajectory.py::test_read_write[pdb-rst7] SKIPPED (rst7 ca...) [ 68%] tests/test_trajectory.py::test_read_write[pdb-gro] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-nc] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-h5] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-xtc] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-trr] PASSED [ 68%] tests/test_trajectory.py::test_read_write[pdb.gz-dcd] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-mdcrd] SKIPPED (mdc...) [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-dtr] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-xyz] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-xyz.gz] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-lammpstrj] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-lh5] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-pdb] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-pdb.gz] PASSED [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-ncrst] SKIPPED (ncr...) [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-rst7] SKIPPED (rst7...) [ 69%] tests/test_trajectory.py::test_read_write[pdb.gz-gro] PASSED [ 69%] tests/test_trajectory.py::test_read_write[ncrst-nc] XFAIL (These ref...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-h5] XFAIL (These ref...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xtc] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-trr] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-dcd] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-mdcrd] XFAIL (These ...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-dtr] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xyz] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-xyz.gz] XFAIL (These...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-lammpstrj] XFAIL (Th...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-lh5] XFAIL (These re...) [ 70%] tests/test_trajectory.py::test_read_write[ncrst-pdb] XFAIL (These re...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-pdb.gz] XFAIL (These...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-ncrst] XFAIL (These ...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-rst7] XFAIL (These r...) [ 71%] tests/test_trajectory.py::test_read_write[ncrst-gro] XFAIL (These re...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-nc] XFAIL (These refe...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-h5] XFAIL (These refe...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-xtc] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-trr] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-dcd] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-mdcrd] XFAIL (These r...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-dtr] XFAIL (These ref...) [ 71%] tests/test_trajectory.py::test_read_write[rst7-xyz] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-xyz.gz] XFAIL (These ...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-lammpstrj] XFAIL (The...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-lh5] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-pdb] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-pdb.gz] XFAIL (These ...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-ncrst] XFAIL (These r...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-rst7] XFAIL (These re...) [ 72%] tests/test_trajectory.py::test_read_write[rst7-gro] XFAIL (These ref...) [ 72%] tests/test_trajectory.py::test_read_write[gro-nc] PASSED [ 72%] tests/test_trajectory.py::test_read_write[gro-h5] PASSED [ 72%] tests/test_trajectory.py::test_read_write[gro-xtc] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-trr] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-dcd] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-mdcrd] SKIPPED (mdcrd ...) [ 73%] tests/test_trajectory.py::test_read_write[gro-dtr] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-xyz] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-xyz.gz] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-lammpstrj] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-lh5] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-pdb] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-pdb.gz] PASSED [ 73%] tests/test_trajectory.py::test_read_write[gro-ncrst] SKIPPED (ncrst ...) [ 74%] tests/test_trajectory.py::test_read_write[gro-rst7] SKIPPED (rst7 ca...) [ 74%] tests/test_trajectory.py::test_read_write[gro-gro] PASSED [ 74%] tests/test_trajectory.py::test_load[nc] PASSED [ 74%] tests/test_trajectory.py::test_load[h5] PASSED [ 74%] tests/test_trajectory.py::test_load[xtc] PASSED [ 74%] tests/test_trajectory.py::test_load[trr] PASSED [ 74%] tests/test_trajectory.py::test_load[dcd] PASSED [ 74%] tests/test_trajectory.py::test_load[mdcrd] PASSED [ 74%] tests/test_trajectory.py::test_load[dtr] PASSED [ 74%] tests/test_trajectory.py::test_load[xyz] PASSED [ 74%] tests/test_trajectory.py::test_load[xyz.gz] PASSED [ 74%] tests/test_trajectory.py::test_load[lammpstrj] PASSED [ 75%] tests/test_trajectory.py::test_load[lh5] PASSED [ 75%] tests/test_trajectory.py::test_load[pdb] PASSED [ 75%] tests/test_trajectory.py::test_load[pdb.gz] PASSED [ 75%] tests/test_trajectory.py::test_load[ncrst] XFAIL (These reference fi...) [ 75%] tests/test_trajectory.py::test_load[rst7] XFAIL (These reference fil...) [ 75%] tests/test_trajectory.py::test_load[gro] PASSED [ 75%] tests/test_trajectory.py::test_hdf5 PASSED [ 75%] tests/test_trajectory.py::test_center PASSED [ 75%] tests/test_trajectory.py::test_center_aind PASSED [ 75%] tests/test_trajectory.py::test_float_atom_indices_exception[nc] PASSED [ 75%] tests/test_trajectory.py::test_float_atom_indices_exception[h5] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xtc] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[trr] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[dcd] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[mdcrd] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[dtr] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xyz] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[xyz.gz] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[lammpstrj] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[lh5] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[pdb] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[pdb.gz] PASSED [ 76%] tests/test_trajectory.py::test_float_atom_indices_exception[ncrst] XFAIL [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[rst7] XFAIL [ 77%] tests/test_trajectory.py::test_float_atom_indices_exception[gro] PASSED [ 77%] tests/test_trajectory.py::test_restrict_atoms PASSED [ 77%] tests/test_trajectory.py::test_restrict_atoms_not_inplace PASSED [ 77%] tests/test_trajectory.py::test_array_vs_matrix PASSED [ 77%] tests/test_trajectory.py::test_pdb_unitcell_loadsave PASSED [ 77%] tests/test_trajectory.py::test_load_combination[nc] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[h5] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[xtc] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[trr] PASSED [ 77%] tests/test_trajectory.py::test_load_combination[dcd] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[mdcrd] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[dtr] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[xyz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[xyz.gz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[lammpstrj] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[lh5] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[pdb] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[pdb.gz] PASSED [ 78%] tests/test_trajectory.py::test_load_combination[ncrst] XFAIL (These ...) [ 78%] tests/test_trajectory.py::test_load_combination[rst7] XFAIL (These r...) [ 78%] tests/test_trajectory.py::test_load_combination[gro] PASSED [ 79%] tests/test_trajectory.py::test_no_topology PASSED [ 79%] tests/test_trajectory.py::test_join PASSED [ 79%] tests/test_trajectory.py::test_md_join PASSED [ 79%] tests/test_trajectory.py::test_stack_1 PASSED [ 79%] tests/test_trajectory.py::test_stack_2 PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[nc] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[h5] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[xtc] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[trr] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[dcd] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[mdcrd] PASSED [ 79%] tests/test_trajectory.py::test_seek_read_mode[dtr] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[xyz] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[xyz.gz] XFAIL (This is...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[lammpstrj] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[lh5] PASSED [ 80%] tests/test_trajectory.py::test_seek_read_mode[pdb] XFAIL (PDB Files ...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[pdb.gz] XFAIL (PDB Fil...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[ncrst] XFAIL (These re...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[rst7] XFAIL (These ref...) [ 80%] tests/test_trajectory.py::test_seek_read_mode[gro] XFAIL (This is br...) [ 80%] tests/test_trajectory.py::test_load_frame[nc] PASSED [ 80%] tests/test_trajectory.py::test_load_frame[h5] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[xtc] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[trr] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[dcd] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[mdcrd] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[dtr] XFAIL (DTR doesn't lo...) [ 81%] tests/test_trajectory.py::test_load_frame[xyz] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[xyz.gz] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[lammpstrj] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[lh5] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[pdb] PASSED [ 81%] tests/test_trajectory.py::test_load_frame[pdb.gz] PASSED [ 82%] tests/test_trajectory.py::test_load_frame[ncrst] XFAIL (These refere...) [ 82%] tests/test_trajectory.py::test_load_frame[rst7] XFAIL (These referen...) [ 82%] tests/test_trajectory.py::test_load_frame[gro] XFAIL (Gro doesn't im...) [ 82%] tests/test_trajectory.py::test_load_frame_2eqq PASSED [ 82%] tests/test_trajectory.py::test_iterload[nc] PASSED [ 82%] tests/test_trajectory.py::test_iterload[h5] PASSED [ 82%] tests/test_trajectory.py::test_iterload[xtc] PASSED [ 82%] tests/test_trajectory.py::test_iterload[trr] PASSED [ 82%] tests/test_trajectory.py::test_iterload[dcd] PASSED [ 82%] tests/test_trajectory.py::test_iterload[mdcrd] PASSED [ 82%] tests/test_trajectory.py::test_iterload[dtr] XFAIL (This is broken w...) [ 82%] tests/test_trajectory.py::test_iterload[xyz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[xyz.gz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[lammpstrj] PASSED [ 83%] tests/test_trajectory.py::test_iterload[lh5] PASSED [ 83%] tests/test_trajectory.py::test_iterload[pdb] PASSED [ 83%] tests/test_trajectory.py::test_iterload[pdb.gz] PASSED [ 83%] tests/test_trajectory.py::test_iterload[ncrst] SKIPPED (Only 1 frame...) [ 83%] tests/test_trajectory.py::test_iterload[rst7] SKIPPED (Only 1 frame ...) [ 83%] tests/test_trajectory.py::test_iterload[gro] PASSED [ 83%] tests/test_trajectory.py::test_iterload_skip[nc] PASSED [ 83%] tests/test_trajectory.py::test_iterload_skip[h5] PASSED [ 83%] tests/test_trajectory.py::test_iterload_skip[xtc] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[trr] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[dcd] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[mdcrd] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[dtr] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[xyz] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[xyz.gz] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[lammpstrj] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[lh5] PASSED [ 84%] tests/test_trajectory.py::test_iterload_skip[pdb] XFAIL (PDB Iterloa...) [ 84%] tests/test_trajectory.py::test_iterload_skip[pdb.gz] XFAIL (PDB Iter...) [ 84%] tests/test_trajectory.py::test_iterload_skip[ncrst] XFAIL (These ref...) [ 84%] tests/test_trajectory.py::test_iterload_skip[rst7] XFAIL (These refe...) [ 85%] tests/test_trajectory.py::test_iterload_skip[gro] XFAIL (Not impleme...) [ 85%] tests/test_trajectory.py::test_iterload_chunk_dcd PASSED [ 85%] tests/test_trajectory.py::test_save_load[nc] PASSED [ 85%] tests/test_trajectory.py::test_save_load[h5] PASSED [ 85%] tests/test_trajectory.py::test_save_load[xtc] PASSED [ 85%] tests/test_trajectory.py::test_save_load[trr] PASSED [ 85%] tests/test_trajectory.py::test_save_load[dcd] PASSED [ 85%] tests/test_trajectory.py::test_save_load[mdcrd] PASSED [ 85%] tests/test_trajectory.py::test_save_load[dtr] PASSED [ 85%] tests/test_trajectory.py::test_save_load[xyz] PASSED [ 85%] tests/test_trajectory.py::test_save_load[xyz.gz] PASSED [ 86%] tests/test_trajectory.py::test_save_load[lammpstrj] PASSED [ 86%] tests/test_trajectory.py::test_save_load[lh5] PASSED [ 86%] tests/test_trajectory.py::test_save_load[pdb] PASSED [ 86%] tests/test_trajectory.py::test_save_load[pdb.gz] PASSED [ 86%] tests/test_trajectory.py::test_save_load[ncrst] PASSED [ 86%] tests/test_trajectory.py::test_save_load[rst7] PASSED [ 86%] tests/test_trajectory.py::test_save_load[gro] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[nc] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[h5] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[xtc] PASSED [ 86%] tests/test_trajectory.py::test_force_overwrite[trr] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[dcd] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[mdcrd] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[dtr] XFAIL (This is b...) [ 87%] tests/test_trajectory.py::test_force_overwrite[xyz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[xyz.gz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[lammpstrj] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[lh5] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[pdb] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[pdb.gz] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[ncrst] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[rst7] PASSED [ 87%] tests/test_trajectory.py::test_force_overwrite[gro] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[nc] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[h5] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xtc] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[trr] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[dcd] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[mdcrd] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[dtr] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xyz] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[xyz.gz] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[lammpstrj] PASSED [ 88%] tests/test_trajectory.py::test_force_noverwrite[lh5] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[pdb] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[pdb.gz] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[ncrst] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[rst7] PASSED [ 89%] tests/test_trajectory.py::test_force_noverwrite[gro] PASSED [ 89%] tests/test_trajectory.py::test_open_and_load PASSED [ 89%] tests/test_trajectory.py::test_length PASSED [ 89%] tests/test_trajectory.py::test_unitcell[nc] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[h5] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[xtc] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[trr] PASSED [ 89%] tests/test_trajectory.py::test_unitcell[dcd] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[mdcrd] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[dtr] XFAIL (dtr seems to nee...) [ 90%] tests/test_trajectory.py::test_unitcell[xyz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[xyz.gz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[lammpstrj] XFAIL (lammpstrj ...) [ 90%] tests/test_trajectory.py::test_unitcell[lh5] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[pdb] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[pdb.gz] PASSED [ 90%] tests/test_trajectory.py::test_unitcell[ncrst] XFAIL (ncrst seems to...) [ 90%] tests/test_trajectory.py::test_unitcell[rst7] XFAIL (rst7 seems to n...) [ 90%] tests/test_trajectory.py::test_unitcell[gro] PASSED [ 91%] tests/test_trajectory.py::test_chunk0_iterload PASSED [ 91%] tests/test_trajectory.py::test_hashing PASSED [ 91%] tests/test_trajectory.py::test_smooth PASSED [ 91%] tests/test_trajectory.py::test_make_whole PASSED [ 91%] tests/test_trajectory.py::test_load_pdb_no_standard_names PASSED [ 91%] tests/test_trajectory.py::test_load_with_atom_indices PASSED [ 91%] tests/test_trajectory.py::test_atom_slicing PASSED [ 91%] tests/test_trajectory.py::test_load_with_frame PASSED [ 91%] tests/test_trajectory.py::test_add_remove_atoms PASSED [ 91%] tests/test_trr.py::test_1 PASSED [ 91%] tests/test_trr.py::test_read_stride PASSED [ 92%] tests/test_trr.py::test_read_stride_n_frames PASSED [ 92%] tests/test_trr.py::test_read_stride_offsets PASSED [ 92%] tests/test_trr.py::test_read_stride_n_frames_offsets PASSED [ 92%] tests/test_trr.py::test_read_stride_switching PASSED [ 92%] tests/test_trr.py::test_write_read PASSED [ 92%] tests/test_trr.py::test_read_atomindices_1 PASSED [ 92%] tests/test_trr.py::test_read_atomindices_2 PASSED [ 92%] tests/test_trr.py::test_deficient_shape PASSED [ 92%] tests/test_trr.py::test_ragged_1 PASSED [ 92%] tests/test_trr.py::test_ragged_2 PASSED [ 92%] tests/test_trr.py::test_malformed PASSED [ 92%] tests/test_trr.py::test_tell PASSED [ 93%] tests/test_trr.py::test_seek PASSED [ 93%] tests/test_trr.py::test_get_velocities PASSED [ 93%] tests/test_trr.py::test_get_forces PASSED [ 93%] tests/test_trr.py::test_get_velocities_and_forces PASSED [ 93%] tests/test_trr.py::test_get_velocities_forces_atom_indices_1 PASSED [ 93%] tests/test_trr.py::test_get_velocities_forces_atom_indices_2 PASSED [ 93%] tests/test_trr.py::test_read_velocities_do_not_exist PASSED [ 93%] tests/test_trr.py::test_read_forces_do_not_exist PASSED [ 93%] tests/test_unitcell.py::Test_Unitcell::test_valid[orthogonal] PASSED [ 93%] tests/test_unitcell.py::Test_Unitcell::test_valid[triclinic] PASSED [ 93%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360[over360] PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360[close] PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_valid_array PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_over360_array PASSED [ 94%] tests/test_unitcell.py::Test_Unitcell::test_invalid_angles_close_array PASSED [ 94%] tests/test_utils.py::test_unitcell_0 PASSED [ 94%] tests/test_utils.py::test_unitcell_1 PASSED [ 94%] tests/test_utils.py::test_ensure_type_1 PASSED [ 94%] tests/test_utils.py::test_ensure_type_2 PASSED [ 94%] tests/test_utils.py::test_ensure_type_25 PASSED [ 94%] tests/test_utils.py::test_ensure_type_3 PASSED [ 94%] tests/test_utils.py::test_ensure_type_4 PASSED [ 94%] tests/test_utils.py::test_ensure_type_5 PASSED [ 95%] tests/test_utils.py::test_ensure_type_6 PASSED [ 95%] tests/test_utils.py::test_ensure_type_7 PASSED [ 95%] tests/test_utils.py::test_ensure_type_8 PASSED [ 95%] tests/test_utils.py::test_ensure_type_9 PASSED [ 95%] tests/test_utils.py::test_ensure_type_10 PASSED [ 95%] tests/test_utils.py::test_ensure_type_11 PASSED [ 95%] tests/test_utils.py::test_ensure_type_12 PASSED [ 95%] tests/test_utils.py::test_ensure_type_13 PASSED [ 95%] tests/test_utils.py::test_ensure_type_14 PASSED [ 95%] tests/test_utils.py::test_ensure_type_15 PASSED [ 95%] tests/test_utils.py::test_delay_import_fail_1 PASSED [ 96%] tests/test_utils.py::test_delay_import PASSED [ 96%] tests/test_utils.py::test_unit_0 PASSED [ 96%] tests/test_utils.py::test_unit_1 PASSED [ 96%] tests/test_utils.py::test_unit_2 PASSED [ 96%] tests/test_utils.py::test_unit_3 PASSED [ 96%] tests/test_xml.py::test_xml PASSED [ 96%] tests/test_xtc.py::test_read_chunk1 PASSED [ 96%] tests/test_xtc.py::test_read_stride PASSED [ 96%] tests/test_xtc.py::test_read_stride_n_frames PASSED [ 96%] tests/test_xtc.py::test_read_stride_offsets PASSED [ 96%] tests/test_xtc.py::test_read_stride_n_frames_offsets PASSED [ 97%] tests/test_xtc.py::test_read_stride_switching_offsets PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_1 PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_w_stride PASSED [ 97%] tests/test_xtc.py::test_read_atomindices_2 PASSED [ 97%] tests/test_xtc.py::test_read_chunk2 PASSED [ 97%] tests/test_xtc.py::test_read_chunk3 PASSED [ 97%] tests/test_xtc.py::test_write_0 PASSED [ 97%] tests/test_xtc.py::test_write_1 PASSED [ 97%] tests/test_xtc.py::test_write_2 PASSED [ 97%] tests/test_xtc.py::test_read_error_0 PASSED [ 97%] tests/test_xtc.py::test_write_error_0 PASSED [ 97%] tests/test_xtc.py::test_read_error_1 PASSED [ 98%] tests/test_xtc.py::test_read_error_2 PASSED [ 98%] tests/test_xtc.py::test_xtc_write_wierd_0 PASSED [ 98%] tests/test_xtc.py::test_tell PASSED [ 98%] tests/test_xtc.py::test_seek PASSED [ 98%] tests/test_xtc.py::test_seek_natoms9 PASSED [ 98%] tests/test_xtc.py::test_seek_out_of_bounds PASSED [ 98%] tests/test_xtc.py::test_ragged_1 PASSED [ 98%] tests/test_xtc.py::test_ragged_2 PASSED [ 98%] tests/test_xtc.py::test_short_traj PASSED [ 98%] tests/test_xtc.py::test_flush PASSED [ 98%] tests/test_xyz.py::test_read_0 PASSED [ 99%] tests/test_xyz.py::test_read_1 PASSED [ 99%] tests/test_xyz.py::test_read_gz PASSED [ 99%] tests/test_xyz.py::test_read_write PASSED [ 99%] tests/test_xyz.py::test_mdwrite PASSED [ 99%] tests/test_xyz.py::test_multiread PASSED [ 99%] tests/test_xyz.py::test_seek PASSED [ 99%] tests/test_xyz.py::test_len PASSED [ 99%] tests/test_zipped.py::test_read_gz PASSED [ 99%] tests/test_zipped.py::test_write_gz PASSED [ 99%] tests/test_zipped.py::test_read_bz2 PASSED [ 99%] tests/test_zipped.py::test_write_bz2 PASSED [100%] =============================== warnings summary =============================== tests/test_distance.py::Test_Distance::test_6 :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 8 from C header, got 48 from PyObject -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ SKIPPED [1] tests/test_dihedral.py:56: pymol executable not found SKIPPED [1] tests/test_dihedral.py:181: pymol executable not found SKIPPED [15] tests/test_docstrings.py:38: Skip checking certain modules' docstrings SKIPPED [1] tests/test_geometry.py:300: Not doing performance testing SKIPPED [1] tests/test_geometry.py:322: Not doing performance testing SKIPPED [1] tests/test_hdf5.py:105: requires openmm.units SKIPPED [1] tests/test_hdf5.py:156: requires openmm.units SKIPPED [1] tests/test_hdf5.py:223: requires openmm.units SKIPPED [1] tests/test_mol2.py:59: Requires obabel SKIPPED [1] tests/test_netcdf.py:274: This test requires cpptraj from AmberTools to be installed (http://ambermd.org) SKIPPED [1] tests/test_nmr.py:11: SPARTA+ binary not found SKIPPED [1] tests/test_nmr.py:26: PPM binary not found SKIPPED [1] tests/test_nmr.py:42: SHIFTX2 binary not found or running on travis. SKIPPED [2] tests/test_psf.py:93: This test requires the VMD executable: http://www.ks.uiuc.edu/Research/vmd/ SKIPPED [1] tests/test_rdf.py:64: Binning does not match up with gromacs currently. SKIPPED [1] tests/test_rdf.py:200: Binning does not match up with gromacs currently. SKIPPED [1] tests/test_reporter.py:58: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_reporter.py:145: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_reporter.py:245: test_reporter.py needs OpenMM. SKIPPED [1] tests/test_selection.py:267: failed to parse selection SKIPPED [1] tests/test_thermodynamic_properties.py:161: Thermal expansion test doesn't work. SKIPPED [1] tests/test_topology.py:49: needs OpenMM SKIPPED [1] tests/test_topology.py:66: needs OpenMM SKIPPED [1] tests/test_topology.py:76: needs OpenMM SKIPPED [1] tests/test_topology.py:85: needs OpenMM SKIPPED [1] tests/test_topology.py:95: needs OpenMM SKIPPED [1] tests/test_topology.py:102: requires openmm >= 8.2 SKIPPED [1] tests/test_topology.py:284: needs OpenMM SKIPPED [1] tests/test_trajectory.py:129: xyz does not store box information SKIPPED [1] tests/test_trajectory.py:129: xyz.gz does not store box information SKIPPED [1] tests/test_trajectory.py:129: lh5 does not store box information SKIPPED [1] tests/test_trajectory.py:129: pdb does not store box information SKIPPED [1] tests/test_trajectory.py:129: pdb.gz does not store box information SKIPPED [1] tests/test_trajectory.py:225: mdcrd can only store rectilinear boxes SKIPPED [1] tests/test_trajectory.py:223: ncrst can only store 1 frame per file SKIPPED [1] tests/test_trajectory.py:223: rst7 can only store 1 frame per file SKIPPED [14] tests/test_trajectory.py:247: mdcrd can only store rectilinear boxes SKIPPED [14] tests/test_trajectory.py:245: ncrst can only store 1 frame per file SKIPPED [14] tests/test_trajectory.py:245: rst7 can only store 1 frame per file SKIPPED [4] tests/test_trajectory.py:255: dtr needs to write unitcells SKIPPED [4] tests/test_trajectory.py:255: lammpstrj needs to write unitcells SKIPPED [2] tests/test_trajectory.py:641: Only 1 frame per file format XFAIL tests/test_trajectory.py::test_read_path[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_path[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-nc] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-h5] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xtc] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-trr] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-dcd] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-mdcrd] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-dtr] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xyz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-xyz.gz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-lammpstrj] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-lh5] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-pdb] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-pdb.gz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[ncrst-gro] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-nc] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-h5] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xtc] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-trr] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-dcd] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-mdcrd] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-dtr] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xyz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-xyz.gz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-lammpstrj] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-lh5] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-pdb] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-pdb.gz] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_read_write[rst7-gro] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_float_atom_indices_exception[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_float_atom_indices_exception[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_combination[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_combination[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[xyz.gz] - reason: This is broken XFAIL tests/test_trajectory.py::test_seek_read_mode[pdb] - reason: PDB Files don't support seeking XFAIL tests/test_trajectory.py::test_seek_read_mode[pdb.gz] - reason: PDB Files don't support seeking XFAIL tests/test_trajectory.py::test_seek_read_mode[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_seek_read_mode[gro] - reason: This is broken XFAIL tests/test_trajectory.py::test_load_frame[dtr] - reason: DTR doesn't load a single frame properly XFAIL tests/test_trajectory.py::test_load_frame[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_frame[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_load_frame[gro] - reason: Gro doesn't implement seek XFAIL tests/test_trajectory.py::test_iterload[dtr] - reason: This is broken with dtr XFAIL tests/test_trajectory.py::test_iterload_skip[pdb] - reason: PDB Iterloads an extra frame!! XFAIL tests/test_trajectory.py::test_iterload_skip[pdb.gz] - reason: PDB Iterloads an extra frame!! XFAIL tests/test_trajectory.py::test_iterload_skip[ncrst] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_iterload_skip[rst7] - reason: These reference files don't exist yet XFAIL tests/test_trajectory.py::test_iterload_skip[gro] - reason: Not implemented for some reason XFAIL tests/test_trajectory.py::test_force_overwrite[dtr] - reason: This is broken with dtr XFAIL tests/test_trajectory.py::test_unitcell[dtr] - reason: dtr seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[lammpstrj] - reason: lammpstrj seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[ncrst] - reason: ncrst seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[rst7] - reason: rst7 seems to need unit vectors = 975 passed, 103 skipped, 22 deselected, 61 xfailed, 1 warning in 181.00s (0:03:01) = lugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) rm -fr -- /tmp/dh-xdg-rundir-UqbPAoV9 create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-mdtraj.substvars rm -fr -- debian/.debhelper/generated/python3-mdtraj/ debian/python3-mdtraj/ debian/tmp/ dh_auto_install -a -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/mdtraj-1.11.0/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/mdtraj-1.11.0/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj Using built-in specs. COLLECT_GCC=/usr/bin/i686-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.3.0-5' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.3.0 (Debian 14.3.0-5) warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. performance hint: mdtraj/geometry/src/image_molecules.pxi:15:5: Exception check on 'make_whole' will always require the GIL to be acquired. Possible solutions: 1. Declare 'make_whole' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'make_whole' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:36:5: Exception check on 'anchor_dists' will always require the GIL to be acquired. Possible solutions: 1. Declare 'anchor_dists' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'anchor_dists' to allow an error code to be returned. performance hint: mdtraj/geometry/src/image_molecules.pxi:68:5: Exception check on 'wrap_mols' will always require the GIL to be acquired. Possible solutions: 1. Declare 'wrap_mols' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'wrap_mols' to allow an error code to be returned. C compiler: Attempting to autodetect OpenMP support... Compiler supports OpenMP Attempting to autodetect SSE2 support... Compiler supports SSE2 Attempting to autodetect SSE3 support... Compiler supports SSE3 Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 Attempting to autodetect NEON support... Did not detect NEON support [ 1/10] Cythonizing mdtraj/formats/dcd/dcd.pyx [ 2/10] Cythonizing mdtraj/formats/dtr/dtr.pyx [ 3/10] Cythonizing mdtraj/formats/xtc/trr.pyx [ 4/10] Cythonizing mdtraj/formats/xtc/xtc.pyx [ 5/10] Cythonizing mdtraj/geometry/drid.pyx [ 6/10] Cythonizing mdtraj/geometry/neighborlist.pyx [ 7/10] Cythonizing mdtraj/geometry/neighbors.pyx [ 8/10] Cythonizing mdtraj/geometry/src/_geometry.pyx [ 9/10] Cythonizing mdtraj/rmsd/_lprmsd.pyx [10/10] Cythonizing mdtraj/rmsd/_rmsd.pyx /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py set /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py to '1.11.0' running build_ext building 'mdtraj.formats.xtc' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_xtc.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/xtc.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/xtc.c:1263: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_xtc.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/xtc.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.trr' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdr_seek.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/src/xdrfile_trr.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/xtc/trr.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/trr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/xtc/trr.c:1265: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdr_seek.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/src/xdrfile_trr.o build/temp.linux-i686-cpython-313/mdtraj/formats/xtc/trr.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.dcd' extension i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/dcd.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/dcd.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dcd/dcd.c:1260: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/dcd -Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dcd/src/dcdplugin.c -o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dcd/src/dcdplugin.c: In function ‘open_dcd_read’: mdtraj/formats/dcd/src/dcdplugin.c:903:14: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 903 | printf("dcdplugin) Warning: DCD header claims %d frames, but \n" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 906 | dcd->nsets, trjsize, newnsets, framesize); | ~~~~~~~ | | | fio_size_t {aka long long int} mdtraj/formats/dcd/src/dcdplugin.c:904:39: note: format string is defined here 904 | "dcdplugin) file size (%ld) indicates there are actually \n" | ~~^ | | | long int | %lld mdtraj/formats/dcd/src/dcdplugin.c:903:14: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘fio_size_t’ {aka ‘long long int’} [-Wformat=] 903 | printf("dcdplugin) Warning: DCD header claims %d frames, but \n" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 906 | dcd->nsets, trjsize, newnsets, framesize); | ~~~~~~~~~ | | | fio_size_t {aka long long int} mdtraj/formats/dcd/src/dcdplugin.c:905:36: note: format string is defined here 905 | "%d frames of size (%ld)\n", | ~~^ | | | long int | %lld i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/dcd.o build/temp.linux-i686-cpython-313/mdtraj/formats/dcd/src/dcdplugin.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so building 'mdtraj.formats.dtr' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/dtr.cpp -o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/dtr.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/formats/dtr/dtr.cpp:1279: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/formats/dtr/src/dtrplugin.cxx -o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/formats/dtr/src/dtrplugin.cxx: In member function ‘bool desres::molfile::Timekeys::init(const std::string&)’: mdtraj/formats/dtr/src/dtrplugin.cxx:486:64: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 486 | fprintf(stderr, "non-constant framesize at frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx:487:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %lld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:487:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 487 | printf("size %d framesize %d\n\n", | ~^ | | | int | %lld 488 | keys[i].size(), m_framesize); | ~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:494:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 494 | "non-constant time interval at frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx:499:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 499 | fprintf(stderr, "unexpected offset for frame %ld\n", i); | ~~^ ~ | | | | | size_t {aka unsigned int} | long int | %d mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘int handle_wrapped_v2({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)’: mdtraj/formats/dtr/src/dtrplugin.cxx:1301:69: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1301 | fprintf(stderr, "ERROR, Expected %d elements in POSITION; got %ld\n", | ~~^ | | | long int | %lld 1302 | 3*natoms, pos.count); | ~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx:1310:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1310 | fprintf(stderr, "ERROR, Expected %d elements in VELOCITY; got %ld\n", | ~~^ | | | long int | %lld 1311 | 3*natoms, vel.count); | ~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)’: mdtraj/formats/dtr/src/dtrplugin.cxx:1572:45: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=] 1572 | fprintf(stderr, "VELOCITY field has %ld values; expected %d\n", | ~~^ | | | long int | %lld 1573 | velblob.count, 3*natoms); | ~~~~~~~~~~~~~ | | | uint64_t {aka long long unsigned int} mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:706:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 706 | sprintf(sub, "%03x/", i); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:706:22: note: directive argument in the range [0, 2147483646] 706 | sprintf(sub, "%03x/", i); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from mdtraj/formats/dtr/include/molfile_plugin.h:35, from mdtraj/formats/dtr/include/dtrplugin.hxx:46, from mdtraj/formats/dtr/src/dtrplugin.cxx:42: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:706:9: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:714:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(subsub, "%03x", j); | ^~~~ mdtraj/formats/dtr/src/dtrplugin.cxx:714:29: note: directive argument in the range [0, 2147483646] 714 | sprintf(subsub, "%03x", j); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:714:13: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:667:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 667 | sprintf(answer, "%03x/", d1); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:667:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ mdtraj/formats/dtr/src/dtrplugin.cxx: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’: mdtraj/formats/dtr/src/dtrplugin.cxx:665:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function ‘std::string DDreldir(const std::string&, int, int)’, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: mdtraj/formats/dtr/src/dtrplugin.cxx:665:29: note: directive argument in the range [0, 2147483646] 665 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string DDreldir(const std::string&, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:665:13, inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at mdtraj/formats/dtr/src/dtrplugin.cxx:771:23: /usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/dtr.o build/temp.linux-i686-cpython-313/mdtraj/formats/dtr/src/dtrplugin.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so building 'mdtraj._rmsd' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_rmsd.cpp:1300: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/rmsd/_rmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so building 'mdtraj._lprmsd' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/_lprmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/_lprmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/rmsd/_lprmsd.cpp:1307: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/Munkres.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/Munkres.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/center.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/euclidean_permutation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/fancy_index.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/fancy_index.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/rotation.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/rmsd/src/theobald_rmsd.cpp -o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/rmsd/_lprmsd.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/Munkres.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/center.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/euclidean_permutation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/fancy_index.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/rotation.o build/temp.linux-i686-cpython-313/mdtraj/rmsd/src/theobald_rmsd.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry._geometry' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/_geometry.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/_geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare In file included from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from mdtraj/geometry/src/_geometry.cpp:1289: /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dssp.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dssp.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/geometry.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/geometry.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/sasa.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/sasa.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/src/_geometry.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dssp.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/geometry.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/sasa.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.drid' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/drid.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/drid.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/dridkernels.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dridkernels.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/moments.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/moments.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/drid.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/dridkernels.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/moments.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.neighbors' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighbors.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighbors.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighbors.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/neighbors.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighbors.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so building 'mdtraj.geometry.neighborlist' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/neighborlist.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/geometry/include -I/usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c mdtraj/geometry/src/neighborlist.cpp -o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighborlist.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/mdtraj-1.11.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-313/mdtraj/geometry/neighborlist.o build/temp.linux-i686-cpython-313/mdtraj/geometry/src/neighborlist.o -L/usr/lib/i386-linux-gnu -lgomp -o /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so running install_lib creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/README.md -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/.gitignore -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbstructure.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/arc.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/xyzfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hoomdxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/registry.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/prmtop.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gro.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mol2.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lh5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hdf5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/netcdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/psf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lammpstrj.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/amberrst.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mdcrd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/openmmxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gsd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/pdbx.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/PdbxReader.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/PdbxContainers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/PdbxReader.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/pdbx.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/pdbxfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/PdbxContainers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/pdbxfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/pi_stacking.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/hbond.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dihedral.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/sasa.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/internal.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/shape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rg.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/pi_stacking.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/order.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/contact.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/angle.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/thermodynamic_properties.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/theobald_rmsd.h -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/center.h -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/residue_names.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/topology.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/element.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/selection.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/trajectory.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/io.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/shift_wrappers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/scalar_couplings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/baseunit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/prefix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_definitions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_operators.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/doctests.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/basedimension.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/standard_dimensions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/quantity.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_math.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/mymatrix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/validation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/unitcell.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/rotation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/zipped.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/delay_import.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/singleton.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/contextmanagers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docstrings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docscrape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/testing.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/hdf5reporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/netcdfreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/basereporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/dcdreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/xtcreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdinspect.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdconvert.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/arc.py to arc.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/openmmxml.py to openmmxml.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mdcrd.py to mdcrd.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/xyzfile.py to xyzfile.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hdf5.py to hdf5.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gro.py to gro.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbstructure.py to pdbstructure.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mol2.py to mol2.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lh5.py to lh5.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/psf.py to psf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/amberrst.py to amberrst.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/registry.py to registry.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hoomdxml.py to hoomdxml.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lammpstrj.py to lammpstrj.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/netcdf.py to netcdf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/prmtop.py to prmtop.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbx.py to pdbx.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxReader.py to PdbxReader.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxContainers.py to PdbxContainers.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbxfile.py to pdbxfile.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gsd.py to gsd.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rg.py to rg.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/contact.py to contact.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/shape.py to shape.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/pi_stacking.py to pi_stacking.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/order.py to order.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dssp.py to dssp.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/thermodynamic_properties.py to thermodynamic_properties.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dihedral.py to dihedral.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/hbond.py to hbond.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/internal.py to internal.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rdf.py to rdf.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/angle.py to angle.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/sasa.py to sasa.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/element.py to element.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/topology.py to topology.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/selection.py to selection.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/residue_names.py to residue_names.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/trajectory.py to trajectory.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/shift_wrappers.py to shift_wrappers.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/scalar_couplings.py to scalar_couplings.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unitcell.py to unitcell.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_operators.py to unit_operators.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/standard_dimensions.py to standard_dimensions.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_math.py to unit_math.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/mymatrix.py to mymatrix.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_definitions.py to unit_definitions.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/doctests.py to doctests.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/quantity.py to quantity.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/prefix.py to prefix.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/baseunit.py to baseunit.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit.py to unit.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/basedimension.py to basedimension.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/delay_import.py to delay_import.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/validation.py to validation.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/contextmanagers.py to contextmanagers.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/singleton.py to singleton.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/rotation.py to rotation.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/zipped.py to zipped.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/testing.py to testing.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docstrings.py to docstrings.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docscrape.py to docscrape.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/dcdreporter.py to dcdreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/netcdfreporter.py to netcdfreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/xtcreporter.py to xtcreporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/hdf5reporter.py to hdf5reporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/basereporter.py to basereporter.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdinspect.py to mdinspect.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdconvert.py to mdconvert.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating mdtraj.egg-info writing mdtraj.egg-info/PKG-INFO writing dependency_links to mdtraj.egg-info/dependency_links.txt writing entry points to mdtraj.egg-info/entry_points.txt writing requirements to mdtraj.egg-info/requires.txt writing top-level names to mdtraj.egg-info/top_level.txt writing manifest file 'mdtraj.egg-info/SOURCES.txt' dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/i386-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'mdtraj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching '__pycache__' no previously-included directories found matching '*.pyc' adding license file 'LICENSE' writing manifest file 'mdtraj.egg-info/SOURCES.txt' Copying mdtraj.egg-info to /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj-1.11.0.egg-info Skipping SOURCES.txt running install_scripts Installing mdconvert-mdtraj script to /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/bin Installing mdinspect script to /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/bin dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/copyright debian/python3-mdtraj/usr/share/doc/python3-mdtraj/copyright dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.trimmed debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/share/man/man1/ install -p -m0644 ./debian/mdconvert-mdtraj.1 debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 install -m0755 -d debian/python3-mdtraj/usr/share/man/man1/ install -p -m0644 ./debian/mdinspect.1 debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 mv debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 mv debian/python3-mdtraj/usr/share/man/man1/mdinspect.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:174: source=mdtraj, binary packages=['python3-mdtraj'] D: dh_python3 dh_python3:205: processing package python3-mdtraj... D: dh_python3 fs:50: moving files from debian/python3-mdtraj/usr/lib/python3.13/dist-packages to debian/python3-mdtraj/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdinspect I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdconvert-mdtraj D: dh_python3 fs:338: package python3-mdtraj details = {'requires.txt': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-mdtraj D: dh_python3 pydist:175: trying to find dependency for numpy<3,>=1.25.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:277: dependency: included in build-deps with limits D: dh_python3 pydist:175: trying to find dependency for packaging (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pyparsing (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for scipy (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3-scipy', 'python3-pyparsing', 'python3 (<< 3.14)', 'python3:any', 'python3-packaging', 'python3-numpy (>= 2.0.0~)'}; R=[]; S=[]; E=[], B=[]; RT=[] debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.0' # setup.py builds the static lib libtheobald.a for each python version # but dh_python3 can't tell the difference between the different builds, # since py3.11 compiles libtheobald.o with -fwrapv, where py3.12 uses -fno-strict-overflow # So clean up manually (assume the binary difference is not an issue) rm -f debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib/libtheobald.a for d in debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib; do if [-d $d]; then rmdir -p --ignore-fail-on-non-empty $d; fi; done /bin/sh: 1: [-d: not found make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.11.0' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-mdtraj chmod a-x usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 gzip -9nf usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 cd '/build/reproducible-path/mdtraj-1.11.0' dh_fixperms -a -O--buildsystem=pybuild find debian/python3-mdtraj ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-mdtraj/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-mdtraj/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-mdtraj/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-mdtraj/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-mdtraj/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu/python3-mdtraj.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/python3-mdtraj.debug -- debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so objcopy --compress-debug-sections debian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu/python3-mdtraj.debug chmod 0644 -- debian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu/python3-mdtraj.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e5/ff697a807517045110fdeef03fb7ac33c67108.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e5/ff697a807517045110fdeef03fb7ac33c67108.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e5/ff697a807517045110fdeef03fb7ac33c67108.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/81/839ffeea913d905b209b9a9da3f8a9939769e1.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/81/839ffeea913d905b209b9a9da3f8a9939769e1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/81/839ffeea913d905b209b9a9da3f8a9939769e1.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/c9/19eda74f9d8422363747f0d1dda296b9d19236.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/c9/19eda74f9d8422363747f0d1dda296b9d19236.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/c9/19eda74f9d8422363747f0d1dda296b9d19236.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d6/1d5836428b4151c47f26f52acc08cf73b0c092.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d6/1d5836428b4151c47f26f52acc08cf73b0c092.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/d6/1d5836428b4151c47f26f52acc08cf73b0c092.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/db/0da58dc0bf58076adf03eaf36b858eab0d7f5c.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/db/0da58dc0bf58076adf03eaf36b858eab0d7f5c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/db/0da58dc0bf58076adf03eaf36b858eab0d7f5c.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/5a/4148d59e1064c2017ab84cb288640fe1d7199a.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/5a/4148d59e1064c2017ab84cb288640fe1d7199a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/5a/4148d59e1064c2017ab84cb288640fe1d7199a.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/1a/b8eaa4f37d3186cfedf55ec5ea81c4249e7eae.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/1a/b8eaa4f37d3186cfedf55ec5ea81c4249e7eae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/1a/b8eaa4f37d3186cfedf55ec5ea81c4249e7eae.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/16 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/16/78ce7d57dfa149cecea7c861adf9a31f4efb99.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/16/78ce7d57dfa149cecea7c861adf9a31f4efb99.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/16/78ce7d57dfa149cecea7c861adf9a31f4efb99.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/55/101272cda18bd9920a217d5e52a34e9e6f8152.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/55/101272cda18bd9920a217d5e52a34e9e6f8152.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/55/101272cda18bd9920a217d5e52a34e9e6f8152.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/b9 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/b9/6f5197979142b6d3fedbff51d2c8ffcc1e98c6.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/b9/6f5197979142b6d3fedbff51d2c8ffcc1e98c6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/b9/6f5197979142b6d3fedbff51d2c8ffcc1e98c6.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/core/lib/libtheobald.a install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-mdtraj/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-mdtraj/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-mdtraj/usr/lib/debug install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/share/doc ln -s python3-mdtraj debian/.debhelper/python3-mdtraj/dbgsym-root/usr/share/doc/python3-mdtraj-dbgsym install -m0755 -d debian/.debhelper/python3-mdtraj dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-mdtraj/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN dpkg-shlibdeps -Tdebian/python3-mdtraj.substvars debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-i386-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-i386-linux-gnu.so dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/postinst cat debian/python3-mdtraj.postinst.debhelper >> debian/python3-mdtraj/DEBIAN/postinst chmod 0755 -- debian/python3-mdtraj/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/prerm cat debian/python3-mdtraj.prerm.debhelper >> debian/python3-mdtraj/DEBIAN/prerm chmod 0755 -- debian/python3-mdtraj/DEBIAN/prerm dh_numpy3 -a -O--buildsystem=pybuild Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. mv debian/python3-mdtraj.substvars.new debian/python3-mdtraj.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN echo misc:Depends= >> debian/python3-mdtraj.substvars echo misc:Pre-Depends= >> debian/python3-mdtraj.substvars install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/.debhelper/python3-mdtraj/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-mdtraj-dbgsym "-DDepends=python3-mdtraj (= \${binary:Version})" "-DDescription=debug symbols for python3-mdtraj" "-DBuild-Ids=1678ce7d57dfa149cecea7c861adf9a31f4efb99 1ab8eaa4f37d3186cfedf55ec5ea81c4249e7eae 55101272cda18bd9920a217d5e52a34e9e6f8152 5a4148d59e1064c2017ab84cb288640fe1d7199a 81839ffeea913d905b209b9a9da3f8a9939769e1 b96f5197979142b6d3fedbff51d2c8ffcc1e98c6 c919eda74f9d8422363747f0d1dda296b9d19236 d61d5836428b4151c47f26f52acc08cf73b0c092 db0da58dc0bf58076adf03eaf36b858eab0d7f5c e5ff697a807517045110fdeef03fb7ac33c67108" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/python3-mdtraj chmod 0644 -- debian/python3-mdtraj/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN cd debian/python3-mdtraj >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-mdtraj/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN cd debian/.debhelper/python3-mdtraj/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-mdtraj .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-mdtraj/dbgsym-root .. dpkg-deb: building package 'python3-mdtraj-dbgsym' in '../python3-mdtraj-dbgsym_1.11.0-1_i386.deb'. dpkg-deb: building package 'python3-mdtraj' in '../python3-mdtraj_1.11.0-1_i386.deb'. dpkg-genbuildinfo --build=any -O../mdtraj_1.11.0-1_i386.buildinfo dpkg-genchanges --build=any -O../mdtraj_1.11.0-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from mdtraj-1.11.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-09-30T08:43:22Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Tue, 30 Sep 2025 08:43:23 +0000 | +------------------------------------------------------------------------------+ mdtraj_1.11.0-1_i386.changes: ----------------------------- Format: 1.8 Date: Mon, 11 Aug 2025 19:30:51 +0200 Source: mdtraj Binary: python3-mdtraj python3-mdtraj-dbgsym Architecture: i386 Version: 1.11.0-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python3-mdtraj - Read, write and analyze MD trajectories in Python Changes: mdtraj (1.11.0-1) unstable; urgency=medium . * New upstream release - versioned Build-Depends: python3-numpy (>= 2.0.0~) * drop debian patch revert_flaky_PR1972.patch for new upstream release * Build-Depends: dh-sequence-numpy3 and remove dh_numpy3 from execute_after_dh_python3 * Standards-Version: 4.7.2 * Depends: python3-pytest-rerunfailures (for rerun option in pytest.mark.flaky). Run build-time tests . * debian/tests: skip example pi_stacking.ipynb (needs py3Dmol) * apply test skips from debian/tests to PYBUILD_TEST_ARGS in debian/rules (skip tests needing internet or 3rd party packages) * skip mdconvert in build tests (binary not yet accessible) * debian patch openmm_version_skip.patch skips test_topology_openmm_formal_charges in test_topology if openmm 8.2 or later is not available (introducing the formal_charges API). See also upstream #1956, PR#1967. Build-Depends: python3-packaging Checksums-Sha1: 4c1fc66e90cc565c1fc516a29ef7bb8af736cf14 10052 mdtraj_1.11.0-1_i386.buildinfo 9d966c32a6a80af774f576dc915d6777e0103ee3 5587824 python3-mdtraj-dbgsym_1.11.0-1_i386.deb 2a60451292bda422f723e413e5f57bbb0db392d9 1032664 python3-mdtraj_1.11.0-1_i386.deb Checksums-Sha256: d520d1ce48fde966407045c70f165832078506f87a096aad6c22616d91c1cf3c 10052 mdtraj_1.11.0-1_i386.buildinfo b3b09e02b584a25f9fecdc5ea627bbcc7f3e25c1f2357e7f5333702817388ee7 5587824 python3-mdtraj-dbgsym_1.11.0-1_i386.deb 5364a6aca175e222b37a3746057bb290447ecc14eb988fcf757e7f8192b8226b 1032664 python3-mdtraj_1.11.0-1_i386.deb Files: 7c81e4c4101ffbd78481eb126e149cc3 10052 python optional mdtraj_1.11.0-1_i386.buildinfo fdb5a650a40fbf4f427f9988633d6afc 5587824 debug optional python3-mdtraj-dbgsym_1.11.0-1_i386.deb 3cb980bd1f5934761fc73ad992d8d081 1032664 python optional python3-mdtraj_1.11.0-1_i386.deb +------------------------------------------------------------------------------+ | Buildinfo Tue, 30 Sep 2025 08:43:23 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: mdtraj Binary: python3-mdtraj python3-mdtraj-dbgsym Architecture: i386 Version: 1.11.0-1 Checksums-Md5: fdb5a650a40fbf4f427f9988633d6afc 5587824 python3-mdtraj-dbgsym_1.11.0-1_i386.deb 3cb980bd1f5934761fc73ad992d8d081 1032664 python3-mdtraj_1.11.0-1_i386.deb Checksums-Sha1: 9d966c32a6a80af774f576dc915d6777e0103ee3 5587824 python3-mdtraj-dbgsym_1.11.0-1_i386.deb 2a60451292bda422f723e413e5f57bbb0db392d9 1032664 python3-mdtraj_1.11.0-1_i386.deb Checksums-Sha256: b3b09e02b584a25f9fecdc5ea627bbcc7f3e25c1f2357e7f5333702817388ee7 5587824 python3-mdtraj-dbgsym_1.11.0-1_i386.deb 5364a6aca175e222b37a3746057bb290447ecc14eb988fcf757e7f8192b8226b 1032664 python3-mdtraj_1.11.0-1_i386.deb Build-Origin: Debian Build-Architecture: i386 Build-Date: Tue, 30 Sep 2025 08:43:22 +0000 Build-Path: /build/reproducible-path/mdtraj-1.11.0 Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.2.37-2+b5), binutils (= 2.45-3), binutils-common (= 2.45-3), binutils-gold (= 2.44-2), binutils-gold-i686-linux-gnu (= 2.44-2), binutils-i686-linux-gnu (= 2.45-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20250419), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-14 (= 14.3.0-5), cpp-14-i686-linux-gnu (= 14.3.0-5), cpp-i686-linux-gnu (= 4:14.2.0-1), cython3 (= 3.0.11+dfsg-2+b1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.25), debianutils (= 5.23.2), dh-autoreconf (= 20), dh-python (= 6.20250414), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), docutils-common (= 0.21.2+dfsg-2), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), fonts-mathjax (= 2.7.9+dfsg-1), g++ (= 4:14.2.0-1), g++-14 (= 14.3.0-5), g++-14-i686-linux-gnu (= 14.3.0-5), g++-i686-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.3.0-5), gcc-14-base (= 14.3.0-5), gcc-14-i686-linux-gnu (= 14.3.0-5), gcc-15-base (= 15.2.0-1), gcc-i686-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libaec0 (= 1.1.3-1+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-1), libatomic1 (= 15.2.0-1), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.45-3), libblas3 (= 3.12.1-6), libblkid1 (= 2.41-5), libblosc1 (= 1.21.5+ds-1+b2), libblosc2-4 (= 2.17.1+ds-1), libbrotli1 (= 1.1.0-2+b7), libbsd0 (= 0.12.2-2), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-1), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-3), libctf0 (= 2.45-3), libcurl3t64-gnutls (= 8.15.0-1), libcurl4t64 (= 8.15.0-1), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.25), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.192-4), libexpat1 (= 2.7.1-2), libexpat1-dev (= 2.7.1-2), libffi8 (= 3.4.8-2), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-14-dev (= 14.3.0-5), libgcc-s1 (= 15.2.0-1), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran5 (= 15.2.0-1), libgmp10 (= 2:6.3.0+dfsg-3), libgnutls30t64 (= 3.8.10-2), libgomp1 (= 15.2.0-1), libgprofng0 (= 2.45-3), libgssapi-krb5-2 (= 1.21.3-5), libhdf5-310 (= 1.14.5+repack-3), libhdf5-hl-310 (= 1.14.5+repack-3), libhogweed6t64 (= 3.10.1-1), libidn2-0 (= 2.3.8-2), libisl23 (= 0.27-1), libitm1 (= 15.2.0-1), libjansson4 (= 2.14-2+b3), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-sphinxdoc (= 8.1.3-5), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libjson-perl (= 4.10000-1), libk5crypto3 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblapack3 (= 3.12.1-6), liblastlog2-2 (= 2.41-5), libldap2 (= 2.6.10+dfsg-1), liblz4-1 (= 1.10.0-4), liblzma5 (= 5.8.1-1), liblzo2-2 (= 2.10-3+b1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libnetcdf22 (= 1:4.9.3-1), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1.1), libnghttp3-9 (= 1.8.0-1), libngtcp2-16 (= 1.11.0-1), libngtcp2-crypto-gnutls8 (= 1.11.0-1), libnorm1t64 (= 1.5.9+dfsg-3.1+b2), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-6), libpgm-5.3-0t64 (= 5.3.128~dfsg-2.1+b1), libpipeline1 (= 1.5.8-1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-all-dev (= 3.13.5-1), libpython3-dev (= 3.13.5-1), libpython3-stdlib (= 3.13.5-1), libpython3.13 (= 3.13.6-1), libpython3.13-dev (= 3.13.6-1), libpython3.13-minimal (= 3.13.6-1), libpython3.13-stdlib (= 3.13.6-1), libquadmath0 (= 15.2.0-1), libreadline8t64 (= 8.2-6), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-3), libsmartcols1 (= 2.41-5), libsnappy1v5 (= 1.2.2-1), libsodium23 (= 1.0.18-1+b2), libsqlite3-0 (= 3.46.1-7), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.5.2-1), libstdc++-14-dev (= 14.3.0-5), libstdc++6 (= 15.2.0-1), libsystemd0 (= 257.7-1), libsz2 (= 1.1.3-1+b1), libtasn1-6 (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libubsan1 (= 15.2.0-1), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libxml2 (= 2.12.7+dfsg+really2.9.14-2.1), libxxhash0 (= 0.8.3-2), libzmq5 (= 4.3.5-1+b3), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.38-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 13.0.0), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl (= 3.5.2-1), openssl-provider-legacy (= 3.5.2-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), po-debconf (= 1.0.21+nmu1), python-babel-localedata (= 2.17.0-1), python-tables-data (= 3.10.2-2), python-tinycss2-common (= 1.4.0-2), python3 (= 3.13.5-1), python3-alabaster (= 0.7.16-0.1), python3-all (= 3.13.5-1), python3-all-dev (= 3.13.5-1), python3-attr (= 25.3.0-1), python3-autocommand (= 2.2.2-3), python3-babel (= 2.17.0-1), python3-bleach (= 6.2.0-1), python3-bs4 (= 4.13.4-2), python3-certifi (= 2025.1.31+ds-1), python3-cffi-backend (= 1.17.1-3), python3-cftime (= 1.6.4-2), python3-chardet (= 5.2.0+dfsg-2), python3-charset-normalizer (= 3.4.2-1), python3-cpuinfo (= 9.0.0+git20221119-3), python3-dateutil (= 2.9.0-4), python3-decorator (= 5.2.1-2), python3-defusedxml (= 0.7.1-3), python3-dev (= 3.13.5-1), python3-docutils (= 0.21.2+dfsg-2), python3-fastjsonschema (= 2.21.1-1), python3-gsd (= 4.0.0-1), python3-html5lib (= 1.2-2), python3-idna (= 3.10-1), python3-imagesize (= 1.4.1-1), python3-inflect (= 7.3.1-2), python3-iniconfig (= 1.1.1-2), python3-jaraco.context (= 6.0.1-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-jinja2 (= 3.1.6-1), python3-jsonschema (= 4.19.2-6), python3-jsonschema-specifications (= 2023.12.1-2), python3-jupyter-client (= 8.6.3-2), python3-jupyter-core (= 5.7.2-5), python3-jupyterlab-pygments (= 0.2.2-3), python3-markupsafe (= 2.1.5-1+b3), python3-minimal (= 3.13.5-1), python3-mistune (= 3.1.3-1), python3-more-itertools (= 10.7.0-1), python3-nbclient (= 0.8.0-2), python3-nbconvert (= 7.16.6-1), python3-nbformat (= 5.9.1-1), python3-nbsphinx (= 0.9.5+ds-1), python3-nbsphinx-link (= 1.3.0-4), python3-netcdf4 (= 1.7.2-1+b4), python3-networkx (= 3.2.1-5), python3-numexpr (= 2.11.0-1), python3-numpy (= 1:2.2.4+ds-1), python3-numpy-dev (= 1:2.2.4+ds-1), python3-packaging (= 25.0-1), python3-pandas (= 2.2.3+dfsg-9), python3-pandas-lib (= 2.2.3+dfsg-9), python3-pandocfilters (= 1.5.1-1), python3-pkg-resources (= 78.1.1-0.1), python3-platformdirs (= 4.3.7-1), python3-pluggy (= 1.5.0-1), python3-psutil (= 7.0.0-2), python3-pygments (= 2.18.0+dfsg-2), python3-pyparsing (= 3.1.2-1), python3-pytest (= 8.3.5-2), python3-pytest-rerunfailures (= 15.1-1), python3-pytz (= 2025.2-3), python3-referencing (= 0.36.2-1), python3-requests (= 2.32.3+dfsg-5), python3-roman (= 5.0-1), python3-rpds-py (= 0.21.0-2+b1), python3-scipy (= 1.15.3-1), python3-setuptools (= 78.1.1-0.1), python3-snowballstemmer (= 3.0.1-1), python3-soupsieve (= 2.7-1), python3-sphinx (= 8.1.3-5), python3-tables (= 3.10.2-2), python3-tables-lib (= 3.10.2-2+b1), python3-tinycss2 (= 1.4.0-2), python3-tornado (= 6.4.2-3), python3-traitlets (= 5.14.3+really5.14.3-1), python3-typeguard (= 4.4.2-1), python3-typing-extensions (= 4.14.1-1), python3-urllib3 (= 2.3.0-3), python3-versioneer (= 0.29-1), python3-webencodings (= 0.5.1-5), python3-zipp (= 3.21.0-1), python3-zmq (= 26.4.0-1), python3.13 (= 3.13.6-1), python3.13-dev (= 3.13.6-1), python3.13-minimal (= 3.13.6-1), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sgml-base (= 1.31+nmu1), sphinx-common (= 8.1.3-5), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-4), util-linux (= 2.41-5), xml-core (= 0.19), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=6" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1754933451" +------------------------------------------------------------------------------+ | Package contents Tue, 30 Sep 2025 08:43:23 +0000 | +------------------------------------------------------------------------------+ python3-mdtraj-dbgsym_1.11.0-1_i386.deb --------------------------------------- new Debian package, version 2.0. size 5587824 bytes: control archive=1036 bytes. 743 bytes, 12 lines control 1149 bytes, 11 lines md5sums Package: python3-mdtraj-dbgsym Source: mdtraj Version: 1.11.0-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debichem Team Installed-Size: 5837 Depends: python3-mdtraj (= 1.11.0-1) Section: debug Priority: optional Description: debug symbols for python3-mdtraj Build-Ids: 1678ce7d57dfa149cecea7c861adf9a31f4efb99 1ab8eaa4f37d3186cfedf55ec5ea81c4249e7eae 55101272cda18bd9920a217d5e52a34e9e6f8152 5a4148d59e1064c2017ab84cb288640fe1d7199a 81839ffeea913d905b209b9a9da3f8a9939769e1 b96f5197979142b6d3fedbff51d2c8ffcc1e98c6 c919eda74f9d8422363747f0d1dda296b9d19236 d61d5836428b4151c47f26f52acc08cf73b0c092 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Package: python3-mdtraj Source: mdtraj Version: 1.11.0-1 Architecture: i386 Maintainer: Debichem Team Installed-Size: 4665 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3-numpy (>= 2.0.0~), python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.38), libgcc-s1 (>= 7), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), python3-networkx, python3-pandas, python3-tables Recommends: python3-gsd, python3-netcdf4 Suggests: python-mdtraj-doc Section: python Priority: optional Homepage: https://mdtraj.org/ Description: Read, write and analyze MD trajectories in Python Read, write and analyze MD trajectories with only a few lines of Python code. . MDTraj is a Python library that allows users to manipulate molecular dynamics (MD) trajectories. Features include: * Wide MD format support, including pdb, xtc, trr, dcd, binpos, netcdf, mdcrd, prmtop, and more. * Extremely fast RMSD calculations (4x the speed of the original Theobald QCP). * Extensive analysis functions including those that compute bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR observables. * Lightweight, Pythonic API. . MDTraj includes a command-line application, mdconvert-mdtraj, for converting trajectories between formats. . 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Build-Time: 432 Distribution: unstable Host Architecture: i386 Install-Time: 3 Job: /srv/rebuilderd/tmp/rebuilderdqkaNGk/inputs/mdtraj_1.11.0-1.dsc Machine Architecture: amd64 Package: mdtraj Package-Time: 445 Source-Version: 1.11.0-1 Space: 152976 Status: successful Version: 1.11.0-1 -------------------------------------------------------------------------------- Finished at 2025-09-30T08:43:22Z Build needed 00:07:25, 152976k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdqkaNGk/out size differs for python3-mdtraj-dbgsym_1.11.0-1_i386.deb checking python3-mdtraj-dbgsym_1.11.0-1_i386.deb: