=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdXLFlt2/inputs/python-pysam_0.23.3+ds-2+b1_loong64.buildinfo Source: python-pysam Version: 0.23.3+ds-2 rebuilderd-worker node: loong64-01 +------------------------------------------------------------------------------+ | Downloading sources Wed, 10 Jun 2026 22:20:51 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [189 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [174 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [84.1 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,220 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [263 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [8,544 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.9 MB] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [10.8 kB] Get:20 https://deb.debian.org/debian sid/main Sources [11.6 MB] Get:21 https://deb.debian.org/debian experimental/main Sources [400 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Fetched 34.7 MB in 10s (3,556 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds-2.dsc' python-pysam_0.23.3+ds-2.dsc 2563 SHA256:f3b0fd2ac35e45fe9feeaf0042539d3d2c35f7ffe158774692f641828b9e4947 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds.orig.tar.xz' python-pysam_0.23.3+ds.orig.tar.xz 1504032 SHA256:2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds-2.debian.tar.xz' python-pysam_0.23.3+ds-2.debian.tar.xz 10808 SHA256:27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 python-pysam_0.23.3+ds.orig.tar.xz 27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 python-pysam_0.23.3+ds-2.debian.tar.xz f3b0fd2ac35e45fe9feeaf0042539d3d2c35f7ffe158774692f641828b9e4947 python-pysam_0.23.3+ds-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Wed, 10 Jun 2026 22:21:09 +0000 | +------------------------------------------------------------------------------+ Rebuilding python-pysam=0.23.3+ds-2 in /srv/rebuilderd/tmp/rebuilderdXLFlt2/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdXLFlt2/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdXLFlt2/inputs/python-pysam_0.23.3+ds-2+b1_loong64.buildinfo /srv/rebuilderd/tmp/rebuilderdXLFlt2/inputs/python-pysam_0.23.3+ds-2+b1_loong64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/python-pysam-0.23.3+ds I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [189 kB] Get:2 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable InRelease [187 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 Packages [10.0 MB] Get:4 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 Packages [9870 kB] Fetched 20.3 MB in 4s (4737 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260422T083402Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libc6 loong64 2.42-15 [1286 kB] Fetched 1286 kB in 0s (62.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpynbi2jxn/libc6_2.42-15_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libaudit1 loong64 1:4.1.2-1+b1 [61.2 kB] Fetched 61.2 kB in 0s (5774 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmph359021o/libaudit1_4.1.2-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libmount1 loong64 2.42-4 [221 kB] Fetched 221 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvr56n7et/libmount1_2.42-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5vqdx_hu/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 rpcsvc-proto loong64 1.4.3-1+b1 [61.0 kB] Fetched 61.0 kB in 0s (5959 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv4ltdigg/rpcsvc-proto_1.4.3-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libdebhelper-perl all 13.31 [75.7 kB] Fetched 75.7 kB in 0s (7252 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg8o8yfym/libdebhelper-perl_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnettle8t64 loong64 3.10.2-1+b1 [313 kB] Fetched 313 kB in 0s (24.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp39tb2yif/libnettle8t64_3.10.2-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 binutils loong64 2.46-3 [70.0 kB] Fetched 70.0 kB in 0s (6873 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphifavtzd/binutils_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnghttp3-dev loong64 1.15.0-1 [194 kB] Fetched 194 kB in 0s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpic8ou08u/libnghttp3-dev_1.15.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpkgconf7 loong64 2.5.1-4 [48.2 kB] Fetched 48.2 kB in 0s (4680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpykaln9hb/libpkgconf7_2.5.1-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libtasn1-6-dev loong64 4.21.0-2 [156 kB] Fetched 156 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgd1oku5a/libtasn1-6-dev_4.21.0-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Fetched 60.0 kB in 0s (5793 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2x5t335/autotools-dev_20240727.1+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx08c8bvr/media-types_14.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libtsan2 loong64 16-20260322-1 [2505 kB] Fetched 2505 kB in 0s (83.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_p7a6owm/libtsan2_16-20260322-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcrypt1 loong64 1:4.5.1-1+b1 [97.5 kB] Fetched 97.5 kB in 0s (9329 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpptp4elq7/libcrypt1_4.5.1-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3 loong64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0x4hjo6_/python3_3.13.9-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 comerr-dev loong64 2.1-1.47.4-1 [54.5 kB] Fetched 54.5 kB in 0s (1623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfk1k6tvl/comerr-dev_2.1-1.47.4-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhogweed6t64 loong64 3.10.2-1+b1 [336 kB] Fetched 336 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3r51cygd/libhogweed6t64_3.10.2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 zlib1g-dev loong64 1:1.3.dfsg+really1.3.2-3 [986 kB] Fetched 986 kB in 0s (52.9 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpv_29v_nt/zlib1g-dev_1.3.dfsg+really1.3.2-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libbz2-dev loong64 1.0.8-6+b1 [74.7 kB] Fetched 74.7 kB in 0s (7012 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqz3vtho/libbz2-dev_1.0.8-6+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgssapi-krb5-2 loong64 1.22.1-2+b1 [141 kB] Fetched 141 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpugks6ia1/libgssapi-krb5-2_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libssh2-1t64 loong64 1.11.1-2 [247 kB] Fetched 247 kB in 0s (20.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbzw84pr9/libssh2-1t64_1.11.1-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sysvinit-utils loong64 3.18-1 [29.9 kB] Fetched 29.9 kB in 0s (2905 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpook9a0sf/sysvinit-utils_3.18-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgcc-s1 loong64 16-20260322-1 [106 kB] Fetched 106 kB in 0s (9724 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyqq16ol5/libgcc-s1_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libstdc++-15-dev loong64 15.2.0-16 [6753 kB] Fetched 6753 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9bo8ub78/libstdc++-15-dev_15.2.0-16_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libevent-2.1-7t64 loong64 2.1.12-stable-10+b2 [180 kB] Fetched 180 kB in 0s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfbad85ap/libevent-2.1-7t64_2.1.12-stable-10+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libkeyutils1 loong64 1.6.3-6+b1 [9972 B] Fetched 9972 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplxqk1clq/libkeyutils1_1.6.3-6+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 m4 loong64 1.4.21-1 [332 kB] Fetched 332 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgtg5v0dj/m4_1.4.21-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dpkg loong64 1.23.7 [1527 kB] Fetched 1527 kB in 0s (68.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxxsdjfcv/dpkg_1.23.7_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dash loong64 0.5.12-12+b1 [101 kB] Fetched 101 kB in 0s (9207 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqc13ooz/dash_0.5.12-12+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpam0g loong64 1.7.0-5+b1 [71.5 kB] Fetched 71.5 kB in 0s (6489 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoaudgda7/libpam0g_1.7.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-16 loong64 1.22.1-1 [134 kB] Fetched 134 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdwjykdbi/libngtcp2-16_1.22.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn586si7p/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblzma-dev loong64 5.8.3-1 [503 kB] Fetched 503 kB in 0s (36.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnypnmtnk/liblzma-dev_5.8.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (1125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd0je4u93/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libjs-sphinxdoc all 8.2.3-12 [27.9 kB] Fetched 27.9 kB in 0s (2732 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdjj4ikq6/libjs-sphinxdoc_8.2.3-12_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libunistring5 loong64 1.4.2-1 [483 kB] Fetched 483 kB in 0s (34.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_hucr_xq/libunistring5_1.4.2-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libuuid1 loong64 2.42-4 [32.6 kB] Fetched 32.6 kB in 0s (3152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zxrjqk9/libuuid1_2.42-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3-packaging all 26.0-1 [64.3 kB] Fetched 64.3 kB in 0s (6349 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg_w212r1/python3-packaging_26.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 openssl-provider-legacy loong64 3.6.2-1 [314 kB] Fetched 314 kB in 0s (25.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0qyzf_o0/openssl-provider-legacy_3.6.2-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libbinutils loong64 2.46-3 [497 kB] Fetched 497 kB in 0s (34.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyk0bm26g/libbinutils_2.46-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 file loong64 1:5.46-5+b1 [44.0 kB] Fetched 44.0 kB in 0s (3169 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpwg07dcbw/file_5.46-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libdeflate0 loong64 1.23-2+b1 [37.9 kB] Fetched 37.9 kB in 0s (3403 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0q_rq7v/libdeflate0_1.23-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libmd0 loong64 1.1.0-2+b2 [32.9 kB] Fetched 32.9 kB in 0s (2011 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplt8ww2xn/libmd0_1.1.0-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libnghttp2-14 loong64 1.68.1-1 [73.9 kB] Fetched 73.9 kB in 0s (1285 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8jmk4a7m/libnghttp2-14_1.68.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 krb5-multidev loong64 1.22.1-2+b1 [127 kB] Fetched 127 kB in 0s (1230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqxa3_uu9/krb5-multidev_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 bcftools loong64 1.22-1 [798 kB] Fetched 798 kB in 5s (156 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl8khskh2/bcftools_1.22-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (1001 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3jbee1ne/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgdbm-compat4t64 loong64 1.26-1+b1 [53.1 kB] Fetched 53.1 kB in 0s (125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpufbf3o8j/libgdbm-compat4t64_1.26-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtool all 2.5.4-11 [539 kB] Fetched 539 kB in 0s (1098 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaeeor_a6/libtool_2.5.4-11_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-crypto-gnutls8 loong64 1.22.1-1 [20.3 kB] Fetched 20.3 kB in 1s (29.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxqqko11/libngtcp2-crypto-gnutls8_1.22.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dwz loong64 0.16-4 [108 kB] Fetched 108 kB in 1s (133 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2umuc615/dwz_0.16-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libbz2-1.0 loong64 1.0.8-6+b1 [40.2 kB] Fetched 40.2 kB in 0s (857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpei8aw5xm/libbz2-1.0_1.0.8-6+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libexpat1 loong64 2.7.5-1 [112 kB] Fetched 112 kB in 0s (300 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7v74k_er/libexpat1_2.7.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (23.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0cnei2i5/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (72.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdn2mg7mr/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 1s (50.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpneqt53fo/python3-inflect_7.5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 bash loong64 5.3-2 [1559 kB] Fetched 1559 kB in 1s (2403 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1508rkj/bash_5.3-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpipeline1 loong64 1.5.8-2+b1 [49.8 kB] Fetched 49.8 kB in 0s (107 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8xmzp1mt/libpipeline1_1.5.8-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libldap-dev loong64 2.6.10+dfsg-1+b1 [619 kB] Fetched 619 kB in 1s (551 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq52u5pbq/libldap-dev_2.6.10+dfsg-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpam-modules loong64 1.7.0-5+b1 [180 kB] Fetched 180 kB in 1s (134 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqzzfxhkh/libpam-modules_1.7.0-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libctf0 loong64 2.46-3 [98.3 kB] Fetched 98.3 kB in 1s (114 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgr2yvhu3/libctf0_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-autocommand all 2.2.2-4 [13.7 kB] Fetched 13.7 kB in 0s (35.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyfkpy_t0/python3-autocommand_2.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 patch loong64 2.8-2+b1 [133 kB] Fetched 133 kB in 0s (307 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjdcs8p9/patch_2.8-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3.13 loong64 3.13.12-1 [776 kB] Fetched 776 kB in 0s (8924 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5rh4p4j0/python3.13_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-iniconfig all 2.1.0-2 [7540 B] Fetched 7540 B in 1s (14.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_glszico/python3-iniconfig_2.1.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libcurl3t64-gnutls loong64 8.20.0~rc2-1 [404 kB] Fetched 404 kB in 0s (850 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpntbkoiam/libcurl3t64-gnutls_8.20.0~rc2-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 cpp-15-loongarch64-linux-gnu loong64 15.2.0-16 [10.2 MB] Fetched 10.2 MB in 3s (3472 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmparwgrljx/cpp-15-loongarch64-linux-gnu_15.2.0-16_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libkadm5clnt-mit12 loong64 1.22.1-2+b1 [42.5 kB] Fetched 42.5 kB in 0s (120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps4o73_xs/libkadm5clnt-mit12_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libunbound8 loong64 1.24.2-1+b1 [607 kB] Fetched 607 kB in 0s (5764 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpatzfa6kv/libunbound8_1.24.2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjansson4 loong64 2.14-2+b4 [41.1 kB] Fetched 41.1 kB in 0s (122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiprl17v4/libjansson4_2.14-2+b4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3.13-stdlib loong64 3.13.12-1 [1946 kB] Fetched 1946 kB in 0s (45.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr6x71w32/libpython3.13-stdlib_3.13.12-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libuchardet0 loong64 0.0.8-2+b1 [69.7 kB] Fetched 69.7 kB in 0s (304 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz3i8rmp7/libuchardet0_0.0.8-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libblkid1 loong64 2.42-4 [180 kB] Fetched 180 kB in 0s (712 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamthpdrj/libblkid1_2.42-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcom-err2 loong64 1.47.4-1 [19.1 kB] Fetched 19.1 kB in 1s (22.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmu8fry2j/libcom-err2_1.47.4-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libc-bin loong64 2.42-15 [575 kB] Fetched 575 kB in 0s (4228 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzpvlycj7/libc-bin_2.42-15_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpython3-stdlib loong64 3.13.9-3 [10.5 kB] Fetched 10.5 kB in 0s (28.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph3ztbsoq/libpython3-stdlib_3.13.9-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libkrb5-dev loong64 1.22.1-2+b1 [16.4 kB] Fetched 16.4 kB in 0s (836 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0emh6ivm/libkrb5-dev_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libsframe3 loong64 2.46-3 [85.8 kB] Fetched 85.8 kB in 0s (836 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9d37vc5z/libsframe3_2.46-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgomp1 loong64 16-20260322-1 [138 kB] Fetched 138 kB in 0s (1079 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptpnnqqip/libgomp1_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3-all-dev loong64 3.13.9-3 [1072 B] Fetched 1072 B in 0s (9004 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpemzfusd_/python3-all-dev_3.13.9-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 1s (138 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpryadveyp/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 cpp-loongarch64-linux-gnu loong64 4:15.2.0-5 [5332 B] Fetched 5332 B in 0s (29.8 kB/s) dpkg-name: info: moved 'cpp-loongarch64-linux-gnu_4%3a15.2.0-5_loong64.deb' to '/srv/rebuilderd/tmp/tmpaep5pb0t/cpp-loongarch64-linux-gnu_15.2.0-5_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 hostname loong64 3.25+b1 [11.2 kB] Fetched 11.2 kB in 0s (58.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1n7u7mrx/hostname_3.25+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmpfr6 loong64 4.2.2-3 [664 kB] Fetched 664 kB in 0s (1397 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx7x9xtk8/libmpfr6_4.2.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdb5.3t64 loong64 5.3.28+dfsg2-11+b1 [711 kB] Fetched 711 kB in 0s (4041 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbdncw64u/libdb5.3t64_5.3.28+dfsg2-11+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libncursesw6 loong64 6.6+20251231-1 [137 kB] Fetched 137 kB in 0s (893 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyke4ceod/libncursesw6_6.6+20251231-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpython3.14-minimal loong64 3.14.4-1 [892 kB] Fetched 892 kB in 0s (7961 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcgqhh8_b/libpython3.14-minimal_3.14.4-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xz-utils loong64 5.8.3-1 [740 kB] Fetched 740 kB in 0s (2974 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5pxwmqdm/xz-utils_5.8.3-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 tabix loong64 1.22.1+ds2-1+b1 [501 kB] Fetched 501 kB in 1s (475 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb55scrxr/tabix_1.22.1+ds2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (6563 kB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmpfr9u7c3w/automake_1.18.1-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libattr1 loong64 1:2.5.2-4 [23.1 kB] Fetched 23.1 kB in 0s (1487 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpyqxjacyx/libattr1_2.5.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 grep loong64 3.12-1+b1 [445 kB] Fetched 445 kB in 0s (31.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0v0h9d54/grep_3.12-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3.14-dev loong64 3.14.4-1 [509 kB] Fetched 509 kB in 0s (35.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsg3fyrhr/python3.14-dev_3.14.4-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 gcc-loongarch64-linux-gnu loong64 4:15.2.0-5 [1448 B] Fetched 1448 B in 0s (139 kB/s) dpkg-name: info: moved 'gcc-loongarch64-linux-gnu_4%3a15.2.0-5_loong64.deb' to '/srv/rebuilderd/tmp/tmp8jppt7ff/gcc-loongarch64-linux-gnu_15.2.0-5_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 coreutils loong64 9.10-1 [3128 kB] Fetched 3128 kB in 0s (76.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo5nze_go/coreutils_9.10-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libidn2-dev loong64 2.3.8-4+b1 [139 kB] Fetched 139 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsftd6m28/libidn2-dev_2.3.8-4+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 cython3 loong64 3.1.6+dfsg-2+b1 [3149 kB] Fetched 3149 kB in 0s (87.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq9uyypxt/cython3_3.1.6+dfsg-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libatomic1 loong64 16-20260322-1 [9352 B] Fetched 9352 B in 0s (916 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwtkau6rw/libatomic1_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgnutls30t64 loong64 3.8.12-3 [1461 kB] Fetched 1461 kB in 0s (66.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpelgv5q6d/libgnutls30t64_3.8.12-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 debianutils loong64 5.23.2+b1 [92.8 kB] Fetched 92.8 kB in 0s (8625 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6djw0byn/debianutils_5.23.2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgssrpc4t64 loong64 1.22.1-2+b1 [60.9 kB] Fetched 60.9 kB in 0s (5798 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq7a5ocdp/libgssrpc4t64_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpam-modules-bin loong64 1.7.0-5+b1 [49.8 kB] Fetched 49.8 kB in 0s (4725 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7r6l8c9p/libpam-modules-bin_1.7.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (19.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmo5xokzw/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 tzdata all 2026a-3 [260 kB] Fetched 260 kB in 0s (15.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprgeef0eh/tzdata_2026a-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 cpp loong64 4:15.2.0-5 [1580 B] Fetched 1580 B in 0s (113 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-5_loong64.deb' to '/srv/rebuilderd/tmp/tmp__or6b4z/cpp_15.2.0-5_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 gcc-15-base loong64 15.2.0-16 [36.3 kB] Fetched 36.3 kB in 0s (3418 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpofszozt3/gcc-15-base_15.2.0-16_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpython3.14-dev loong64 3.14.4-1 [17.2 MB] Fetched 17.2 MB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7t7gkj32/libpython3.14-dev_3.14.4-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libsmartcols1 loong64 2.42-4 [150 kB] Fetched 150 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbfee9_2n/libsmartcols1_2.42-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (86.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp365zudlj/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libcurl4-gnutls-dev loong64 8.20.0~rc2-1 [1271 kB] Fetched 1271 kB in 0s (62.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpccwqv_sx/libcurl4-gnutls-dev_8.20.0~rc2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3.13 loong64 3.13.12-1 [2210 kB] Fetched 2210 kB in 0s (77.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppr7f99ip/libpython3.13_3.13.12-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libdeflate-dev loong64 1.23-2+b1 [84.7 kB] Fetched 84.7 kB in 0s (7658 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpajfe2r4m/libdeflate-dev_1.23-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (45.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2gan4xjq/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 cpp-15 loong64 15.2.0-16 [1284 B] Fetched 1284 B in 0s (123 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyul3e7z6/cpp-15_15.2.0-16_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 librtmp-dev loong64 2.6-1 [126 kB] Fetched 126 kB in 0s (8683 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1upjtb87/librtmp-dev_2.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3.13-minimal loong64 3.13.12-1 [868 kB] Fetched 868 kB in 0s (50.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpic1vxzjw/libpython3.13-minimal_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (2184 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp32wnl0ir/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libffi8 loong64 3.5.2-4 [22.4 kB] Fetched 22.4 kB in 0s (2197 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv7df0l7q/libffi8_3.5.2-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libkrb5support0 loong64 1.22.1-2+b1 [33.8 kB] Fetched 33.8 kB in 0s (3320 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf0py1hw1/libkrb5support0_1.22.1-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcydm7hfv/libsasl2-2_2.1.28+dfsg1-11_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsasl2-2 loong64 2.1.28+dfsg1-11 [56.7 kB] Fetched 56.7 kB in 0s (5426 kB/s) Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libhts3t64 loong64 1.22.1+ds2-1+b1 [467 kB] Fetched 467 kB in 0s (33.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbkgakgq/libhts3t64_1.22.1+ds2-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 samtools loong64 1.22.1-1 [686 kB] Fetched 686 kB in 0s (44.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6vr0efaw/samtools_1.22.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 perl-base loong64 5.40.1-7+b1 [1665 kB] Fetched 1665 kB in 0s (69.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24fpci2p/perl-base_5.40.1-7+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3-all loong64 3.13.9-3 [1048 B] Fetched 1048 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3hct9cm4/python3-all_3.13.9-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpython3-dev loong64 3.13.9-3 [10.8 kB] Fetched 10.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpirkbsvkc/libpython3-dev_3.13.9-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 tar loong64 1.35+dfsg-4 [820 kB] Fetched 820 kB in 0s (48.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx75i9vxx/tar_1.35+dfsg-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libmagic1t64 loong64 1:5.46-5+b1 [111 kB] Fetched 111 kB in 0s (10.1 MB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpxaoua3zp/libmagic1t64_5.46-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 librtmp1 loong64 2.6-1 [60.2 kB] Fetched 60.2 kB in 0s (5763 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpln04gywz/librtmp1_2.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 build-essential loong64 12.12+b1 [4900 B] Fetched 4900 B in 0s (359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy0nakk36/build-essential_12.12+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsqlite3-0 loong64 3.46.1-9+b1 [906 kB] Fetched 906 kB in 0s (42.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp265cyqew/libsqlite3-0_3.46.1-9+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 g++-15 loong64 15.2.0-16 [27.1 kB] Fetched 27.1 kB in 0s (2691 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp75bofdwd/g++-15_15.2.0-16_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libhts-dev loong64 1.22.1+ds2-1+b1 [3276 kB] Fetched 3276 kB in 0s (76.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5zcknoql/libhts-dev_1.22.1+ds2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 mawk loong64 1.3.4.20260302-1 [141 kB] Fetched 141 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpewhorsqn/mawk_1.3.4.20260302-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-dev loong64 1.22.1-1 [424 kB] Fetched 424 kB in 0s (30.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp19fshyna/libngtcp2-dev_1.22.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsasl2-modules-db loong64 2.1.28+dfsg1-11 [17.8 kB] Fetched 17.8 kB in 0s (1291 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptlyz_zzv/libsasl2-modules-db_2.1.28+dfsg1-11_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 sed loong64 4.9-2+b1 [330 kB] Fetched 330 kB in 0s (25.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiwryue6n/sed_4.9-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 autoconf all 2.72-6 [494 kB] Fetched 494 kB in 0s (33.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpghr8wqa2/autoconf_2.72-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libkdb5-10t64 loong64 1.22.1-2+b1 [44.8 kB] Fetched 44.8 kB in 0s (4429 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp98gkaa4/libkdb5-10t64_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpython3.14 loong64 3.14.4-1 [2321 kB] Fetched 2321 kB in 0s (79.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc29210q5/libpython3.14_3.14.4-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libstdc++6 loong64 16-20260322-1 [710 kB] Fetched 710 kB in 0s (44.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb953jzsy/libstdc++6_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 bsdextrautils loong64 2.42-4 [103 kB] Fetched 103 kB in 0s (9587 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphnx3cvit/bsdextrautils_2.42-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libasan8 loong64 16-20260322-1 [2842 kB] Fetched 2842 kB in 0s (85.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpufldmzzp/libasan8_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgcc-15-dev loong64 15.2.0-16 [5368 kB] Fetched 5368 kB in 0s (97.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwwmkc_25/libgcc-15-dev_15.2.0-16_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 g++-loongarch64-linux-gnu loong64 4:15.2.0-5 [1204 B] Fetched 1204 B in 0s (0 B/s) dpkg-name: info: moved 'g++-loongarch64-linux-gnu_4%3a15.2.0-5_loong64.deb' to '/srv/rebuilderd/tmp/tmpvbllo7xe/g++-loongarch64-linux-gnu_15.2.0-5_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libxml2-16 loong64 2.15.2+dfsg-0.1 [647 kB] Fetched 647 kB in 0s (40.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp131syk50/libxml2-16_2.15.2+dfsg-0.1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpcre2-8-0 loong64 10.46-1+b1 [291 kB] Fetched 291 kB in 0s (22.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmploo90133/libpcre2-8-0_10.46-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgmpxx4ldbl loong64 2:6.3.0+dfsg-5+b1 [330 kB] Fetched 330 kB in 0s (18.3 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpbphgqq7x/libgmpxx4ldbl_6.3.0+dfsg-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 make loong64 4.4.1-3+b1 [462 kB] Fetched 462 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdsdvcoge/make_4.4.1-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 gettext-base loong64 0.23.2-2 [242 kB] Fetched 242 kB in 0s (20.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptjxzi8ty/gettext-base_0.23.2-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 autopoint all 0.23.2-2 [770 kB] Fetched 770 kB in 0s (47.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubt2bduy/autopoint_0.23.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptgmmbcga/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 nettle-dev loong64 3.10.2-1+b1 [1501 kB] Fetched 1501 kB in 0s (58.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23me_02z/nettle-dev_3.10.2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (856 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpzcsulsqi/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pytest all 9.0.3-1 [273 kB] Fetched 273 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt84p3aur/python3-pytest_9.0.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 binutils-common loong64 2.46-3 [2632 kB] Fetched 2632 kB in 0s (84.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpomh1dz15/binutils-common_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmpc3 loong64 1.3.1-3 [56.2 kB] Fetched 56.2 kB in 0s (5493 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpenvltltp/libmpc3_1.3.1-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3.13-minimal loong64 3.13.12-1 [2222 kB] Fetched 2222 kB in 0s (79.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvopu66ky/python3.13-minimal_3.13.12-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libc-dev-bin loong64 2.42-15 [36.9 kB] Fetched 36.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpswee9q8x/libc-dev-bin_2.42-15_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 g++-15-loongarch64-linux-gnu loong64 15.2.0-16 [11.3 MB] Fetched 11.3 MB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyk4s1_dw/g++-15-loongarch64-linux-gnu_15.2.0-16_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3-minimal loong64 3.13.9-3 [27.6 kB] Fetched 27.6 kB in 0s (2750 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmvikfvh7/python3-minimal_3.13.9-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 g++ loong64 4:15.2.0-5 [1336 B] Fetched 1336 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a15.2.0-5_loong64.deb' to '/srv/rebuilderd/tmp/tmptpdt_4zk/g++_15.2.0-5_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libp11-kit-dev loong64 0.26.2-2 [223 kB] Fetched 223 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzb43xmzp/libp11-kit-dev_0.26.2-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pygments all 2.19.2+dfsg-1 [847 kB] Fetched 847 kB in 0s (50.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplhoctt6f/python3-pygments_2.19.2+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_quo1phn/dh-autoreconf_22_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdpkg-perl all 1.23.7 [669 kB] Fetched 669 kB in 0s (40.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuwow_e0f/libdpkg-perl_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libreadline8t64 loong64 8.3-4 [181 kB] Fetched 181 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgpf9686/libreadline8t64_8.3-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libudev1 loong64 260.1-1 [131 kB] Fetched 131 kB in 0s (9112 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4q9qjb4t/libudev1_260.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3.13-dev loong64 3.13.12-1 [16.5 MB] Fetched 16.5 MB in 0s (70.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl0ox65_9/libpython3.13-dev_3.13.12-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libtasn1-6 loong64 4.21.0-2 [51.2 kB] Fetched 51.2 kB in 0s (1812 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsz2_0wav/libtasn1-6_4.21.0-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libk5crypto3 loong64 1.22.1-2+b1 [84.9 kB] Fetched 84.9 kB in 0s (1066 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoziy9gfz/libk5crypto3_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libzstd-dev loong64 1.5.7+dfsg-3+b1 [1331 kB] Fetched 1331 kB in 0s (60.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_gzh1i8k/libzstd-dev_1.5.7+dfsg-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 gcc loong64 4:15.2.0-5 [5160 B] Fetched 5160 B in 0s (174 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-5_loong64.deb' to '/srv/rebuilderd/tmp/tmpjyenvowj/gcc_15.2.0-5_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libldap2 loong64 2.6.10+dfsg-1+b1 [197 kB] Fetched 197 kB in 0s (15.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5j8yza7m/libldap2_2.6.10+dfsg-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 debhelper all 13.31 [932 kB] Fetched 932 kB in 0s (52.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj4gbvvat/debhelper_13.31_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 gcc-16-base loong64 16-20260322-1 [35.6 kB] Fetched 35.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ypb5v2u/gcc-16-base_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 liblsan0 loong64 16-20260322-1 [1255 kB] Fetched 1255 kB in 0s (62.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yvaz9d6/liblsan0_16-20260322-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libssl-dev loong64 3.6.2-1 [5977 kB] Fetched 5977 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpew2o5cyx/libssl-dev_3.6.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnghttp3-9 loong64 1.15.0-1 [67.6 kB] Fetched 67.6 kB in 0s (6359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmploredoww/libnghttp3-9_1.15.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcap-ng0 loong64 0.9.3-1 [18.2 kB] Fetched 18.2 kB in 0s (1805 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7xqtc4ib/libcap-ng0_0.9.3-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libctf-nobfd0 loong64 2.46-3 [166 kB] Fetched 166 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7u9mdi5o/libctf-nobfd0_2.46-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 dh-python all 7.20260309 [114 kB] Fetched 114 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplkvfim4n/dh-python_7.20260309_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libexpat1-dev loong64 2.7.5-1 [696 kB] Fetched 696 kB in 0s (44.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjc1ovhe3/libexpat1-dev_2.7.5-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 gcc-15-loongarch64-linux-gnu loong64 15.2.0-16 [19.3 MB] Fetched 19.3 MB in 0s (115 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp82cx5nzv/gcc-15-loongarch64-linux-gnu_15.2.0-16_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (18.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpelv786bm/po-debconf_1.0.22_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libdebconfclient0 loong64 0.282+b2 [11.2 kB] Fetched 11.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp88t00kcl/libdebconfclient0_0.282+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libmagic-mgc loong64 1:5.46-5+b1 [338 kB] Fetched 338 kB in 0s (26.2 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpj1wly03w/libmagic-mgc_5.46-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgmp10 loong64 2:6.3.0+dfsg-5+b1 [568 kB] Fetched 568 kB in 0s (39.0 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmps9rjulss/libgmp10_6.3.0+dfsg-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpython3-all-dev loong64 3.13.9-3 [1072 B] Fetched 1072 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpna75ap1p/libpython3-all-dev_3.13.9-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 gettext loong64 0.23.2-2 [1676 kB] Fetched 1676 kB in 0s (71.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37vzsrvm/gettext_0.23.2-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libc-gconv-modules-extra loong64 2.42-15 [1156 kB] Fetched 1156 kB in 0s (58.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpryrad2sb/libc-gconv-modules-extra_2.42-15_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libssl3t64 loong64 3.6.2-1 [2155 kB] Fetched 2155 kB in 0s (77.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb_u0owvg/libssl3t64_3.6.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpsl5t64 loong64 0.21.5-1 [60.3 kB] Fetched 60.3 kB in 0s (5676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnw6pyq7m/libpsl5t64_0.21.5-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libkrb5-3 loong64 1.22.1-2+b1 [347 kB] Fetched 347 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4jgf5oyq/libkrb5-3_1.22.1-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (3800 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr4v86emu/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dpkg-dev all 1.23.7 [1318 kB] Fetched 1318 kB in 0s (63.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc5wl0zbt/dpkg-dev_1.23.7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 bzip2 loong64 1.0.8-6+b1 [40.7 kB] Fetched 40.7 kB in 0s (3886 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5q98vu2x/bzip2_1.0.8-6+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libkadm5srv-mit12 loong64 1.22.1-2+b1 [57.1 kB] Fetched 57.1 kB in 0s (5458 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp934vrxfn/libkadm5srv-mit12_1.22.1-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (19.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuuzq42ir/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 pkgconf loong64 2.5.1-4 [33.6 kB] Fetched 33.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2twop0r4/pkgconf_2.5.1-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 base-passwd loong64 3.6.8+b1 [54.7 kB] Fetched 54.7 kB in 0s (5203 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplhpzq7r0/base-passwd_3.6.8+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libc6-dev loong64 2.42-15 [3278 kB] Fetched 3278 kB in 0s (89.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1cacb616/libc6-dev_2.42-15_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (9386 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmfw345i7/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblzma5 loong64 5.8.3-1 [323 kB] Fetched 323 kB in 0s (24.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2fl78lv4/liblzma5_5.8.3-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgnutls-dane0t64 loong64 3.8.12-3 [474 kB] Fetched 474 kB in 0s (33.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdidarvf3/libgnutls-dane0t64_3.8.12-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 linux-libc-dev all 6.19.13-1 [1980 kB] Fetched 1980 kB in 0s (75.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfvxd8x46/linux-libc-dev_6.19.13-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3.14 loong64 3.14.4-1 [837 kB] Fetched 837 kB in 0s (47.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7yl7_6t/python3.14_3.14.4-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-typeguard all 4.4.4-2 [37.2 kB] Fetched 37.2 kB in 0s (3577 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07_q8lh_/python3-typeguard_4.4.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libelf1t64 loong64 0.194-4 [187 kB] Fetched 187 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq97gkj8x/libelf1t64_0.194-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libtinfo6 loong64 6.6+20251231-1 [353 kB] Fetched 353 kB in 0s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ahgbgjs/libtinfo6_6.6+20251231-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 base-files loong64 14+b1 [73.2 kB] Fetched 73.2 kB in 0s (6845 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqprar3eo/base-files_14+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 man-db loong64 2.13.1-1+b1 [1460 kB] Fetched 1460 kB in 0s (67.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcccp2q01/man-db_2.13.1-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libncurses6 loong64 6.6+20251231-1 [105 kB] Fetched 105 kB in 0s (9703 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt21g3lie/libncurses6_6.6+20251231-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libsystemd0 loong64 260.1-1 [443 kB] Fetched 443 kB in 0s (33.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5h450ppj/libsystemd0_260.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpsl-dev loong64 0.21.5-1 [91.7 kB] Fetched 91.7 kB in 0s (8315 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpob36k7go/libpsl-dev_0.21.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (22.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb4hzcnxj/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6pw3eojm/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gzip loong64 1.13-1+b1 [137 kB] Fetched 137 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphttv257j/gzip_1.13-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 diffutils loong64 1:3.12-1+b1 [405 kB] Fetched 405 kB in 0s (30.0 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpqn78r79u/diffutils_3.12-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libssh2-1-dev loong64 1.11.1-2 [576 kB] Fetched 576 kB in 0s (38.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9rnszmpl/libssh2-1-dev_1.11.1-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3.14-minimal loong64 3.14.4-1 [2327 kB] Fetched 2327 kB in 0s (80.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplz_ej9ub/python3.14-minimal_3.14.4-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libubsan1 loong64 16-20260322-1 [1118 kB] Fetched 1118 kB in 0s (58.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk7hx_630/libubsan1_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libperl5.40 loong64 5.40.1-7+b1 [4310 kB] Fetched 4310 kB in 0s (94.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxmydwhg6/libperl5.40_5.40.1-7+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (6986 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuqdy39qe/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pluggy all 1.6.0-2 [27.2 kB] Fetched 27.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3fes_ww4/python3-pluggy_1.6.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 util-linux loong64 2.42-4 [1202 kB] Fetched 1202 kB in 0s (60.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp598gqn9x/util-linux_2.42-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 findutils loong64 4.10.0-3+b1 [705 kB] Fetched 705 kB in 0s (44.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgcum_mcl/findutils_4.10.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libacl1 loong64 2.3.2-3 [33.6 kB] Fetched 33.6 kB in 0s (3277 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpel773wo3/libacl1_2.3.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libselinux1 loong64 3.10-1 [85.3 kB] Fetched 85.3 kB in 0s (7843 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp25zwguza/libselinux1_3.10-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 pkgconf-bin loong64 2.5.1-4 [35.2 kB] Fetched 35.2 kB in 0s (3509 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmuo13wzy/pkgconf-bin_2.5.1-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 binutils-loongarch64-linux-gnu loong64 2.46-3 [817 kB] Fetched 817 kB in 0s (48.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6l9m0cxn/binutils-loongarch64-linux-gnu_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libisl23 loong64 0.27-2 [667 kB] Fetched 667 kB in 0s (42.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqp8jex_b/libisl23_0.27-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 ncurses-bin loong64 6.6+20251231-1 [442 kB] Fetched 442 kB in 0s (22.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxcr050io/ncurses-bin_6.6+20251231-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 python3-dev loong64 3.13.9-3 [26.0 kB] Fetched 26.0 kB in 0s (1611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps0olcqqb/python3-dev_3.13.9-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (7117 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg08ris_j/debconf_1.5.92_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libcc1-0 loong64 16-20260322-1 [42.3 kB] Fetched 42.3 kB in 0s (2729 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdqp7owgr/libcc1-0_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 perl loong64 5.40.1-7+b1 [268 kB] Fetched 268 kB in 0s (21.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzwekcoub/perl_5.40.1-7+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhtscodecs2 loong64 1.6.6-1 [74.7 kB] Fetched 74.7 kB in 0s (6742 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeix1rwsd/libhtscodecs2_1.6.6-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgmp-dev loong64 2:6.3.0+dfsg-5+b1 [1084 kB] Fetched 1084 kB in 0s (55.9 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpy9wqc392/libgmp-dev_6.3.0+dfsg-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgdbm6t64 loong64 1.26-1+b1 [79.5 kB] Fetched 79.5 kB in 0s (7086 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvonaaobv/libgdbm6t64_1.26-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libp11-kit0 loong64 0.26.2-2 [431 kB] Fetched 431 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxz7bhret/libp11-kit0_0.26.2-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libnghttp2-dev loong64 1.68.1-1 [222 kB] Fetched 222 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbuz7rz6o/libnghttp2-dev_1.68.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3.13-dev loong64 3.13.12-1 [505 kB] Fetched 505 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt7e65ts_/python3.13-dev_3.13.12-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libpython3.14-stdlib loong64 3.14.4-1 [2249 kB] Fetched 2249 kB in 0s (64.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6e08p6gl/libpython3.14-stdlib_3.14.4-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libgnutls28-dev loong64 3.8.12-3 [2779 kB] Fetched 2779 kB in 0s (69.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6y3a1h67/libgnutls28-dev_3.8.12-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libitm1 loong64 16-20260322-1 [24.8 kB] Fetched 24.8 kB in 0s (1465 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt_59xp19/libitm1_16-20260322-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libzstd1 loong64 1.5.7+dfsg-3+b1 [291 kB] Fetched 291 kB in 0s (15.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz1ky0dku/libzstd1_1.5.7+dfsg-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 gcc-15 loong64 15.2.0-16 [529 kB] Fetched 529 kB in 0s (25.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiiodrcbr/gcc-15_15.2.0-16_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-crypto-gnutls-dev loong64 1.22.1-1 [34.8 kB] Fetched 34.8 kB in 0s (2168 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2zs5y7cf/libngtcp2-crypto-gnutls-dev_1.22.1-1_loong64.deb' Downloading dependency 1 of 255: libc6:loong64=2.42-15 Downloading dependency 2 of 255: libaudit1:loong64=1:4.1.2-1+b1 Downloading dependency 3 of 255: libmount1:loong64=2.42-4 Downloading dependency 4 of 255: libfile-stripnondeterminism-perl:loong64=1.15.0-1 Downloading dependency 5 of 255: rpcsvc-proto:loong64=1.4.3-1+b1 Downloading dependency 6 of 255: libdebhelper-perl:loong64=13.31 Downloading dependency 7 of 255: libnettle8t64:loong64=3.10.2-1+b1 Downloading dependency 8 of 255: binutils:loong64=2.46-3 Downloading dependency 9 of 255: libnghttp3-dev:loong64=1.15.0-1 Downloading dependency 10 of 255: libpkgconf7:loong64=2.5.1-4 Downloading dependency 11 of 255: libtasn1-6-dev:loong64=4.21.0-2 Downloading dependency 12 of 255: autotools-dev:loong64=20240727.1+nmu1 Downloading dependency 13 of 255: media-types:loong64=14.0.0 Downloading dependency 14 of 255: libtsan2:loong64=16-20260322-1 Downloading dependency 15 of 255: libcrypt1:loong64=1:4.5.1-1+b1 Downloading dependency 16 of 255: python3:loong64=3.13.9-3 Downloading dependency 17 of 255: comerr-dev:loong64=2.1-1.47.4-1 Downloading dependency 18 of 255: libhogweed6t64:loong64=3.10.2-1+b1 Downloading dependency 19 of 255: zlib1g-dev:loong64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 20 of 255: libbz2-dev:loong64=1.0.8-6+b1 Downloading dependency 21 of 255: libgssapi-krb5-2:loong64=1.22.1-2+b1 Downloading dependency 22 of 255: libssh2-1t64:loong64=1.11.1-2 Downloading dependency 23 of 255: sysvinit-utils:loong64=3.18-1 Downloading dependency 24 of 255: libgcc-s1:loong64=16-20260322-1 Downloading dependency 25 of 255: libstdc++-15-dev:loong64=15.2.0-16 Downloading dependency 26 of 255: libevent-2.1-7t64:loong64=2.1.12-stable-10+b2 Downloading dependency 27 of 255: libkeyutils1:loong64=1.6.3-6+b1 Downloading dependency 28 of 255: m4:loong64=1.4.21-1 Downloading dependency 29 of 255: dpkg:loong64=1.23.7 Downloading dependency 30 of 255: dash:loong64=0.5.12-12+b1 Downloading dependency 31 of 255: libpam0g:loong64=1.7.0-5+b1 Downloading dependency 32 of 255: libngtcp2-16:loong64=1.22.1-1 Downloading dependency 33 of 255: dh-strip-nondeterminism:loong64=1.15.0-1 Downloading dependency 34 of 255: liblzma-dev:loong64=5.8.3-1 Downloading dependency 35 of 255: python3-jaraco.text:loong64=4.0.0-1 Downloading dependency 36 of 255: libjs-sphinxdoc:loong64=8.2.3-12 Downloading dependency 37 of 255: libunistring5:loong64=1.4.2-1 Downloading dependency 38 of 255: libuuid1:loong64=2.42-4 Downloading dependency 39 of 255: python3-packaging:loong64=26.0-1 Downloading dependency 40 of 255: openssl-provider-legacy:loong64=3.6.2-1 Downloading dependency 41 of 255: libbinutils:loong64=2.46-3 Downloading dependency 42 of 255: file:loong64=1:5.46-5+b1 Downloading dependency 43 of 255: libdeflate0:loong64=1.23-2+b1 Downloading dependency 44 of 255: libmd0:loong64=1.1.0-2+b2 Downloading dependency 45 of 255: libnghttp2-14:loong64=1.68.1-1 Downloading dependency 46 of 255: krb5-multidev:loong64=1.22.1-2+b1 Downloading dependency 47 of 255: bcftools:loong64=1.22-1 Downloading dependency 48 of 255: python3-more-itertools:loong64=10.8.0-1 Downloading dependency 49 of 255: libgdbm-compat4t64:loong64=1.26-1+b1 Downloading dependency 50 of 255: libtool:loong64=2.5.4-11 Downloading dependency 51 of 255: libngtcp2-crypto-gnutls8:loong64=1.22.1-1 Downloading dependency 52 of 255: dwz:loong64=0.16-4 Downloading dependency 53 of 255: libbz2-1.0:loong64=1.0.8-6+b1 Downloading dependency 54 of 255: libexpat1:loong64=2.7.5-1 Downloading dependency 55 of 255: python3-zipp:loong64=3.23.0-1 Downloading dependency 56 of 255: sensible-utils:loong64=0.0.26 Downloading dependency 57 of 255: python3-inflect:loong64=7.5.0-1 Downloading dependency 58 of 255: bash:loong64=5.3-2 Downloading dependency 59 of 255: libpipeline1:loong64=1.5.8-2+b1 Downloading dependency 60 of 255: libldap-dev:loong64=2.6.10+dfsg-1+b1 Downloading dependency 61 of 255: libpam-modules:loong64=1.7.0-5+b1 Downloading dependency 62 of 255: libctf0:loong64=2.46-3 Downloading dependency 63 of 255: python3-autocommand:loong64=2.2.2-4 Downloading dependency 64 of 255: patch:loong64=2.8-2+b1 Downloading dependency 65 of 255: python3.13:loong64=3.13.12-1 Downloading dependency 66 of 255: python3-iniconfig:loong64=2.1.0-2 Downloading dependency 67 of 255: libcurl3t64-gnutls:loong64=8.20.0~rc2-1 Downloading dependency 68 of 255: cpp-15-loongarch64-linux-gnu:loong64=15.2.0-16 Downloading dependency 69 of 255: libkadm5clnt-mit12:loong64=1.22.1-2+b1 Downloading dependency 70 of 255: libunbound8:loong64=1.24.2-1+b1 Downloading dependency 71 of 255: libjansson4:loong64=2.14-2+b4 Downloading dependency 72 of 255: libpython3.13-stdlib:loong64=3.13.12-1 Downloading dependency 73 of 255: libuchardet0:loong64=0.0.8-2+b1 Downloading dependency 74 of 255: libblkid1:loong64=2.42-4 Downloading dependency 75 of 255: libcom-err2:loong64=1.47.4-1 Downloading dependency 76 of 255: libc-bin:loong64=2.42-15 Downloading dependency 77 of 255: libpython3-stdlib:loong64=3.13.9-3 Downloading dependency 78 of 255: libkrb5-dev:loong64=1.22.1-2+b1 Downloading dependency 79 of 255: libsframe3:loong64=2.46-3 Downloading dependency 80 of 255: libgomp1:loong64=16-20260322-1 Downloading dependency 81 of 255: python3-all-dev:loong64=3.13.9-3 Downloading dependency 82 of 255: python3-typing-extensions:loong64=4.15.0-2 Downloading dependency 83 of 255: cpp-loongarch64-linux-gnu:loong64=4:15.2.0-5 Downloading dependency 84 of 255: hostname:loong64=3.25+b1 Downloading dependency 85 of 255: libmpfr6:loong64=4.2.2-3 Downloading dependency 86 of 255: libdb5.3t64:loong64=5.3.28+dfsg2-11+b1 Downloading dependency 87 of 255: libncursesw6:loong64=6.6+20251231-1 Downloading dependency 88 of 255: libpython3.14-minimal:loong64=3.14.4-1 Downloading dependency 89 of 255: xz-utils:loong64=5.8.3-1 Downloading dependency 90 of 255: tabix:loong64=1.22.1+ds2-1+b1 Downloading dependency 91 of 255: automake:loong64=1:1.18.1-4 Downloading dependency 92 of 255: libattr1:loong64=1:2.5.2-4 Downloading dependency 93 of 255: grep:loong64=3.12-1+b1 Downloading dependency 94 of 255: python3.14-dev:loong64=3.14.4-1 Downloading dependency 95 of 255: gcc-loongarch64-linux-gnu:loong64=4:15.2.0-5 Downloading dependency 96 of 255: coreutils:loong64=9.10-1 Downloading dependency 97 of 255: libidn2-dev:loong64=2.3.8-4+b1 Downloading dependency 98 of 255: cython3:loong64=3.1.6+dfsg-2+b1 Downloading dependency 99 of 255: libatomic1:loong64=16-20260322-1 Downloading dependency 100 of 255: libgnutls30t64:loong64=3.8.12-3 Downloading dependency 101 of 255: debianutils:loong64=5.23.2+b1 Downloading dependency 102 of 255: libgssrpc4t64:loong64=1.22.1-2+b1 Downloading dependency 103 of 255: libpam-modules-bin:loong64=1.7.0-5+b1 Downloading dependency 104 of 255: libpam-runtime:loong64=1.7.0-5 Downloading dependency 105 of 255: tzdata:loong64=2026a-3 Downloading dependency 106 of 255: cpp:loong64=4:15.2.0-5 Downloading dependency 107 of 255: gcc-15-base:loong64=15.2.0-16 Downloading dependency 108 of 255: libpython3.14-dev:loong64=3.14.4-1 Downloading dependency 109 of 255: libsmartcols1:loong64=2.42-4 Downloading dependency 110 of 255: perl-modules-5.40:loong64=5.40.1-7 Downloading dependency 111 of 255: libcurl4-gnutls-dev:loong64=8.20.0~rc2-1 Downloading dependency 112 of 255: libpython3.13:loong64=3.13.12-1 Downloading dependency 113 of 255: libdeflate-dev:loong64=1.23-2+b1 Downloading dependency 114 of 255: python3-setuptools:loong64=78.1.1-0.1 Downloading dependency 115 of 255: cpp-15:loong64=15.2.0-16 Downloading dependency 116 of 255: librtmp-dev:loong64=2.6-1 Downloading dependency 117 of 255: libpython3.13-minimal:loong64=3.13.12-1 Downloading dependency 118 of 255: intltool-debian:loong64=0.35.0+20060710.6 Downloading dependency 119 of 255: libffi8:loong64=3.5.2-4 Downloading dependency 120 of 255: libkrb5support0:loong64=1.22.1-2+b1 Downloading dependency 121 of 255: libsasl2-2:loong64=2.1.28+dfsg1-11 Downloading dependency 122 of 255: libhts3t64:loong64=1.22.1+ds2-1+b1 Downloading dependency 123 of 255: samtools:loong64=1.22.1-1 Downloading dependency 124 of 255: perl-base:loong64=5.40.1-7+b1 Downloading dependency 125 of 255: python3-all:loong64=3.13.9-3Get:1 http://deb.debian.org/debian unstable/main loong64 libbrotli1 loong64 1.2.0-3 [312 kB] Fetched 312 kB in 0s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu5xddni8/libbrotli1_1.2.0-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.context all 6.0.1-2 [8184 B] Fetched 8184 B in 0s (501 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt0l15g2i/python3-jaraco.context_6.0.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 zlib1g loong64 1:1.3.dfsg+really1.3.2-3 [87.8 kB] Fetched 87.8 kB in 0s (5293 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpsumsbqdh/zlib1g_1.3.dfsg+really1.3.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libbrotli-dev loong64 1.2.0-3 [815 kB] Fetched 815 kB in 0s (34.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa2qwfd_l/libbrotli-dev_1.2.0-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 libidn2-0 loong64 2.3.8-4+b1 [110 kB] Fetched 110 kB in 0s (6334 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeu_l_19h/libidn2-0_2.3.8-4+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260422T083402Z unstable/main loong64 groff-base loong64 1.23.0-10+b1 [1169 kB] Fetched 1169 kB in 0s (45.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy8s06wx_/groff-base_1.23.0-10+b1_loong64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-source --before-build . dpkg-buildpackage: info: host architecture loong64 dpkg-source: warning: email address 'Equivs Dummy Package Generator ' with single label domain debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: email address 'Equivs Dummy Package Generator ' with single label domain dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_loong64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_loong64.changes dpkg-genchanges: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-genchanges: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmps8ef144q/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture loong64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp 127.0.0.1 - - [10/Jun/2026 18:24:10] code 404, message File not found 127.0.0.1 - - [10/Jun/2026 18:24:10] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:40963 ./ InRelease 127.0.0.1 - - [10/Jun/2026 18:24:10] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:40963 ./ Release [462 B] 127.0.0.1 - - [10/Jun/2026 18:24:10] code 404, message File not found 127.0.0.1 - - [10/Jun/2026 18:24:10] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:40963 ./ Release.gpg 127.0.0.1 - - [10/Jun/2026 18:24:10] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:40963 ./ Packages [310 kB] Fetched 311 kB in 0s (11.1 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [10/Jun/2026 18:24:10] "GET /./gcc-16-base_16-20260322-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:10] "GET /./libc-gconv-modules-extra_2.42-15_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:10] "GET /./libc6_2.42-15_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./libgcc-s1_16-20260322-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./mawk_1.3.4.20260302-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./base-files_14%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./libtinfo6_6.6%2b20251231-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./debianutils_5.23.2%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./bash_5.3-2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./libacl1_2.3.2-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./libattr1_2.5.2-4_loong64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [10/Jun/2026 18:24:11] "GET /./sysvinit-utils_3.18-1_loong64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp 127.0.0.1 - - [10/Jun/2026 18:24:13] code 404, message File not found 127.0.0.1 - - [10/Jun/2026 18:24:13] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:40963 ./ InRelease 127.0.0.1 - - [10/Jun/2026 18:24:13] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:40963 ./ Release 127.0.0.1 - - [10/Jun/2026 18:24:13] code 404, message File not found 127.0.0.1 - - [10/Jun/2026 18:24:13] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:40963 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [10/Jun/2026 18:24:21] "GET /./libexpat1_2.7.5-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:21] "GET /./libpython3.13-minimal_3.13.12-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:21] "GET /./python3.13-minimal_3.13.12-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:21] "GET /./python3-minimal_3.13.9-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:21] "GET /./media-types_14.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:21] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:21] "GET /./tzdata_2026a-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:21] "GET /./libffi8_3.5.2-4_loong64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [10/Jun/2026 18:24:24] "GET /./libncurses6_6.6%2b20251231-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:24] "GET /./samtools_1.22.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:24] "GET /./libhts-dev_1.22.1%2bds2-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:24] "GET /./python3-pluggy_1.6.0-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:24] "GET /./python3-pygments_2.19.2%2bdfsg-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:24] "GET /./python3-pytest_9.0.3-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:24] "GET /./dh-python_7.20260309_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Jun/2026 18:24:24] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmps8ef144q/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp Reading package lists... Building dependency tree... Reading state information... libc6 is already the newest version (2.42-15). libaudit1 is already the newest version (1:4.1.2-1+b1). libmount1 is already the newest version (2.42-4). libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b1). rpcsvc-proto set to manually installed. libdebhelper-perl is already the newest version (13.31). libdebhelper-perl set to manually installed. libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. binutils is already the newest version (2.46-3). binutils set to manually installed. libnghttp3-dev is already the newest version (1.15.0-1). libnghttp3-dev set to manually installed. libpkgconf7 is already the newest version (2.5.1-4). libpkgconf7 set to manually installed. libtasn1-6-dev is already the newest version (4.21.0-2). libtasn1-6-dev set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. libtsan2 is already the newest version (16-20260322-1). libtsan2 set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1+b1). python3 is already the newest version (3.13.9-3). python3 set to manually installed. comerr-dev is already the newest version (2.1-1.47.4-1). comerr-dev set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1+b1). libhogweed6t64 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. libbz2-dev is already the newest version (1.0.8-6+b1). libbz2-dev set to manually installed. libgssapi-krb5-2 is already the newest version (1.22.1-2+b1). libgssapi-krb5-2 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-2). libssh2-1t64 set to manually installed. sysvinit-utils is already the newest version (3.18-1). libgcc-s1 is already the newest version (16-20260322-1). libstdc++-15-dev is already the newest version (15.2.0-16). libstdc++-15-dev set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b2). libevent-2.1-7t64 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b1). libkeyutils1 set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. dpkg is already the newest version (1.23.7). dash is already the newest version (0.5.12-12+b1). libpam0g is already the newest version (1.7.0-5+b1). libngtcp2-16 is already the newest version (1.22.1-1). libngtcp2-16 set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. liblzma-dev is already the newest version (5.8.3-1). liblzma-dev set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libjs-sphinxdoc is already the newest version (8.2.3-12). libjs-sphinxdoc set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libuuid1 is already the newest version (2.42-4). python3-packaging is already the newest version (26.0-1). python3-packaging set to manually installed. openssl-provider-legacy is already the newest version (3.6.2-1). libbinutils is already the newest version (2.46-3). libbinutils set to manually installed. file is already the newest version (1:5.46-5+b1). file set to manually installed. libdeflate0 is already the newest version (1.23-2+b1). libdeflate0 set to manually installed. libmd0 is already the newest version (1.1.0-2+b2). libnghttp2-14 is already the newest version (1.68.1-1). libnghttp2-14 set to manually installed. krb5-multidev is already the newest version (1.22.1-2+b1). krb5-multidev set to manually installed. bcftools is already the newest version (1.22-1). bcftools set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b1). libgdbm-compat4t64 set to manually installed. libtool is already the newest version (2.5.4-11). libtool set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.22.1-1). libngtcp2-crypto-gnutls8 set to manually installed. dwz is already the newest version (0.16-4). dwz set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b1). libexpat1 is already the newest version (2.7.5-1). libexpat1 set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. bash is already the newest version (5.3-2). libpipeline1 is already the newest version (1.5.8-2+b1). libpipeline1 set to manually installed. libldap-dev is already the newest version (2.6.10+dfsg-1+b1). libldap-dev set to manually installed. libpam-modules is already the newest version (1.7.0-5+b1). libctf0 is already the newest version (2.46-3). libctf0 set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. patch is already the newest version (2.8-2+b1). patch set to manually installed. python3.13 is already the newest version (3.13.12-1). python3.13 set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. libcurl3t64-gnutls is already the newest version (8.20.0~rc2-1). libcurl3t64-gnutls set to manually installed. cpp-15-loongarch64-linux-gnu is already the newest version (15.2.0-16). cpp-15-loongarch64-linux-gnu set to manually installed. libkadm5clnt-mit12 is already the newest version (1.22.1-2+b1). libkadm5clnt-mit12 set to manually installed. libunbound8 is already the newest version (1.24.2-1+b1). libunbound8 set to manually installed. libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. libpython3.13-stdlib is already the newest version (3.13.12-1). libpython3.13-stdlib set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b1). libuchardet0 set to manually installed. libblkid1 is already the newest version (2.42-4). libcom-err2 is already the newest version (1.47.4-1). libcom-err2 set to manually installed. libc-bin is already the newest version (2.42-15). libpython3-stdlib is already the newest version (3.13.9-3). libpython3-stdlib set to manually installed. libkrb5-dev is already the newest version (1.22.1-2+b1). libkrb5-dev set to manually installed. libsframe3 is already the newest version (2.46-3). libsframe3 set to manually installed. libgomp1 is already the newest version (16-20260322-1). libgomp1 set to manually installed. python3-all-dev is already the newest version (3.13.9-3). python3-all-dev set to manually installed. python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. cpp-loongarch64-linux-gnu is already the newest version (4:15.2.0-5). cpp-loongarch64-linux-gnu set to manually installed. hostname is already the newest version (3.25+b1). libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libncursesw6 is already the newest version (6.6+20251231-1). libncursesw6 set to manually installed. libpython3.14-minimal is already the newest version (3.14.4-1). libpython3.14-minimal set to manually installed. xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. tabix is already the newest version (1.22.1+ds2-1+b1). tabix set to manually installed. automake is already the newest version (1:1.18.1-4). automake set to manually installed. libattr1 is already the newest version (1:2.5.2-4). grep is already the newest version (3.12-1+b1). python3.14-dev is already the newest version (3.14.4-1). python3.14-dev set to manually installed. gcc-loongarch64-linux-gnu is already the newest version (4:15.2.0-5). gcc-loongarch64-linux-gnu set to manually installed. coreutils is already the newest version (9.10-1). libidn2-dev is already the newest version (2.3.8-4+b1). libidn2-dev set to manually installed. cython3 is already the newest version (3.1.6+dfsg-2+b1). cython3 set to manually installed. libatomic1 is already the newest version (16-20260322-1). libatomic1 set to manually installed. libgnutls30t64 is already the newest version (3.8.12-3). libgnutls30t64 set to manually installed. debianutils is already the newest version (5.23.2+b1). libgssrpc4t64 is already the newest version (1.22.1-2+b1). libgssrpc4t64 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5+b1). libpam-runtime is already the newest version (1.7.0-5). tzdata is already the newest version (2026a-3). tzdata set to manually installed. cpp is already the newest version (4:15.2.0-5). cpp set to manually installed. gcc-15-base is already the newest version (15.2.0-16). gcc-15-base set to manually installed. libpython3.14-dev is already the newest version (3.14.4-1). libpython3.14-dev set to manually installed. libsmartcols1 is already the newest version (2.42-4). perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. libcurl4-gnutls-dev is already the newest version (8.20.0~rc2-1). libcurl4-gnutls-dev set to manually installed. libpython3.13 is already the newest version (3.13.12-1). libpython3.13 set to manually installed. libdeflate-dev is already the newest version (1.23-2+b1). libdeflate-dev set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. cpp-15 is already the newest version (15.2.0-16). cpp-15 set to manually installed. librtmp-dev is already the newest version (2.6-1). librtmp-dev set to manually installed. libpython3.13-minimal is already the newest version (3.13.12-1). libpython3.13-minimal set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libffi8 is already the newest version (3.5.2-4). libffi8 set to manually installed. libkrb5support0 is already the newest version (1.22.1-2+b1). libkrb5support0 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-11). libsasl2-2 set to manually installed. libhts3t64 is already the newest version (1.22.1+ds2-1+b1). libhts3t64 set to manually installed. samtools is already the newest version (1.22.1-1). samtools set to manually installed. perl-base is already the newest version (5.40.1-7+b1). python3-all is already the newest version (3.13.9-3). python3-all set to manually installed. libpython3-dev is already the newest version (3.13.9-3). libpython3-dev set to manually installed. tar is already the newest version (1.35+dfsg-4). libmagic1t64 is already the newest version (1:5.46-5+b1). libmagic1t64 set to manually installed. librtmp1 is already the newest version (2.6-1). librtmp1 set to manually installed. build-essential is already the newest version (12.12+b1). build-essential set to manually installed. libsqlite3-0 is already the newest version (3.46.1-9+b1). libsqlite3-0 set to manually installed. g++-15 is already the newest version (15.2.0-16). g++-15 set to manually installed. libhts-dev is already the newest version (1.22.1+ds2-1+b1). libhts-dev set to manually installed. mawk is already the newest version (1.3.4.20260302-1). libngtcp2-dev is already the newest version (1.22.1-1). libngtcp2-dev set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-11). libsasl2-modules-db set to manually installed. sed is already the newest version (4.9-2+b1). autoconf is already the newest version (2.72-6). autoconf set to manually installed. libkdb5-10t64 is already the newest version (1.22.1-2+b1). libkdb5-10t64 set to manually installed. libpython3.14 is already the newest version (3.14.4-1). libpython3.14 set to manually installed. libstdc++6 is already the newest version (16-20260322-1). libstdc++6 set to manually installed. bsdextrautils is already the newest version (2.42-4). bsdextrautils set to manually installed. libasan8 is already the newest version (16-20260322-1). libasan8 set to manually installed. libgcc-15-dev is already the newest version (15.2.0-16). libgcc-15-dev set to manually installed. g++-loongarch64-linux-gnu is already the newest version (4:15.2.0-5). g++-loongarch64-linux-gnu set to manually installed. libxml2-16 is already the newest version (2.15.2+dfsg-0.1). libxml2-16 set to manually installed. libpcre2-8-0 is already the newest version (10.46-1+b1). libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5+b1). libgmpxx4ldbl set to manually installed. make is already the newest version (4.4.1-3+b1). make set to manually installed. gettext-base is already the newest version (0.23.2-2). gettext-base set to manually installed. autopoint is already the newest version (0.23.2-2). autopoint set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. nettle-dev is already the newest version (3.10.2-1+b1). nettle-dev set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). python3-pytest is already the newest version (9.0.3-1). python3-pytest set to manually installed. binutils-common is already the newest version (2.46-3). binutils-common set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. python3.13-minimal is already the newest version (3.13.12-1). python3.13-minimal set to manually installed. libc-dev-bin is already the newest version (2.42-15). libc-dev-bin set to manually installed. g++-15-loongarch64-linux-gnu is already the newest version (15.2.0-16). g++-15-loongarch64-linux-gnu set to manually installed. python3-minimal is already the newest version (3.13.9-3). python3-minimal set to manually installed. g++ is already the newest version (4:15.2.0-5). g++ set to manually installed. libp11-kit-dev is already the newest version (0.26.2-2). libp11-kit-dev set to manually installed. python3-pygments is already the newest version (2.19.2+dfsg-1). python3-pygments set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libudev1 is already the newest version (260.1-1). libpython3.13-dev is already the newest version (3.13.12-1). libpython3.13-dev set to manually installed. libtasn1-6 is already the newest version (4.21.0-2). libtasn1-6 set to manually installed. libk5crypto3 is already the newest version (1.22.1-2+b1). libk5crypto3 set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-3+b1). libzstd-dev set to manually installed. gcc is already the newest version (4:15.2.0-5). gcc set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1+b1). libldap2 set to manually installed. debhelper is already the newest version (13.31). debhelper set to manually installed. gcc-16-base is already the newest version (16-20260322-1). liblsan0 is already the newest version (16-20260322-1). liblsan0 set to manually installed. libssl-dev is already the newest version (3.6.2-1). libssl-dev set to manually installed. libnghttp3-9 is already the newest version (1.15.0-1). libnghttp3-9 set to manually installed. libcap-ng0 is already the newest version (0.9.3-1). libctf-nobfd0 is already the newest version (2.46-3). libctf-nobfd0 set to manually installed. dh-python is already the newest version (7.20260309). dh-python set to manually installed. libexpat1-dev is already the newest version (2.7.5-1). libexpat1-dev set to manually installed. gcc-15-loongarch64-linux-gnu is already the newest version (15.2.0-16). gcc-15-loongarch64-linux-gnu set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libdebconfclient0 is already the newest version (0.282+b2). libmagic-mgc is already the newest version (1:5.46-5+b1). libmagic-mgc set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b1). libpython3-all-dev is already the newest version (3.13.9-3). libpython3-all-dev set to manually installed. gettext is already the newest version (0.23.2-2). gettext set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-15). libssl3t64 is already the newest version (3.6.2-1). libpsl5t64 is already the newest version (0.21.5-1). libpsl5t64 set to manually installed. libkrb5-3 is already the newest version (1.22.1-2+b1). libkrb5-3 set to manually installed. init-system-helpers is already the newest version (1.69). dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. bzip2 is already the newest version (1.0.8-6+b1). bzip2 set to manually installed. libkadm5srv-mit12 is already the newest version (1.22.1-2+b1). libkadm5srv-mit12 set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. pkgconf is already the newest version (2.5.1-4). pkgconf set to manually installed. base-passwd is already the newest version (3.6.8+b1). libc6-dev is already the newest version (2.42-15). libc6-dev set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. liblzma5 is already the newest version (5.8.3-1). libgnutls-dane0t64 is already the newest version (3.8.12-3). libgnutls-dane0t64 set to manually installed. linux-libc-dev is already the newest version (6.19.13-1). linux-libc-dev set to manually installed. python3.14 is already the newest version (3.14.4-1). python3.14 set to manually installed. python3-typeguard is already the newest version (4.4.4-2). python3-typeguard set to manually installed. libelf1t64 is already the newest version (0.194-4). libelf1t64 set to manually installed. libtinfo6 is already the newest version (6.6+20251231-1). base-files is already the newest version (14+b1). man-db is already the newest version (2.13.1-1+b1). man-db set to manually installed. libncurses6 is already the newest version (6.6+20251231-1). libncurses6 set to manually installed. libsystemd0 is already the newest version (260.1-1). libpsl-dev is already the newest version (0.21.5-1). libpsl-dev set to manually installed. ncurses-base is already the newest version (6.6+20251231-1). netbase is already the newest version (6.5). netbase set to manually installed. gzip is already the newest version (1.13-1+b1). diffutils is already the newest version (1:3.12-1+b1). libssh2-1-dev is already the newest version (1.11.1-2). libssh2-1-dev set to manually installed. python3.14-minimal is already the newest version (3.14.4-1). python3.14-minimal set to manually installed. libubsan1 is already the newest version (16-20260322-1). libubsan1 set to manually installed. libperl5.40 is already the newest version (5.40.1-7+b1). libperl5.40 set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. util-linux is already the newest version (2.42-4). findutils is already the newest version (4.10.0-3+b1). libacl1 is already the newest version (2.3.2-3). libselinux1 is already the newest version (3.10-1). pkgconf-bin is already the newest version (2.5.1-4). pkgconf-bin set to manually installed. binutils-loongarch64-linux-gnu is already the newest version (2.46-3). binutils-loongarch64-linux-gnu set to manually installed. libisl23 is already the newest version (0.27-2). libisl23 set to manually installed. ncurses-bin is already the newest version (6.6+20251231-1). python3-dev is already the newest version (3.13.9-3). python3-dev set to manually installed. debconf is already the newest version (1.5.92). libcc1-0 is already the newest version (16-20260322-1). libcc1-0 set to manually installed. perl is already the newest version (5.40.1-7+b1). perl set to manually installed. libhtscodecs2 is already the newest version (1.6.6-1). libhtscodecs2 set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-5+b1). libgmp-dev set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b1). libgdbm6t64 set to manually installed. libp11-kit0 is already the newest version (0.26.2-2). libp11-kit0 set to manually installed. libnghttp2-dev is already the newest version (1.68.1-1). libnghttp2-dev set to manually installed. python3.13-dev is already the newest version (3.13.12-1). python3.13-dev set to manually installed. libpython3.14-stdlib is already the newest version (3.14.4-1). libpython3.14-stdlib set to manually installed. libgnutls28-dev is already the newest version (3.8.12-3). libgnutls28-dev set to manually installed. libitm1 is already the newest version (16-20260322-1). libitm1 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-3+b1). gcc-15 is already the newest version (15.2.0-16). gcc-15 set to manually installed. libngtcp2-crypto-gnutls-dev is already the newest version (1.22.1-1). libngtcp2-crypto-gnutls-dev set to manually installed. libbrotli1 is already the newest version (1.2.0-3). libbrotli1 set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). libbrotli-dev is already the newest version (1.2.0-3). libbrotli-dev set to manually installed. libidn2-0 is already the newest version (2.3.8-4+b1). libidn2-0 set to manually installed. groff-base is already the newest version (1.23.0-10+b1). groff-base set to manually installed. Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp (Reading database ... 19607 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.yCiF3UUcBp... 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python-pysam (0.23.3+ds-2+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild on buildd -- loong64 Build Daemon (loongson-tecnico-01) Wed, 22 Apr 2026 12:39:42 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildMVKrEJ/debrebuild.tar.pT_U9EaJnvGh --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=python-pysam-0.23.3+ds /srv/rebuilderd/tmp/rebuilderdXLFlt2/inputs/python-pysam_0.23.3+ds-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.91.9 (05 May 2026) on loong64-01 +==============================================================================+ | python-pysam 0.23.3+ds-2+b1 (loong64) Wed, 10 Jun 2026 22:27:13 +0000 | +==============================================================================+ Package: python-pysam Version: 0.23.3+ds-2+b1 Source Version: 0.23.3+ds-2 Distribution: unstable Machine Architecture: loong64 Host Architecture: loong64 Build Architecture: loong64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildMVKrEJ/debrebuild.tar.pT_U9EaJnvGh to /srv/rebuilderd/tmp/tmp.sbuild.k4eiKn64fx... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Wed, 10 Jun 2026 22:27:23 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdXLFlt2/inputs/python-pysam_0.23.3+ds-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdXLFlt2/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 10 Jun 2026 22:27:25 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-g0E3Jh/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Wed, 10 Jun 2026 22:27:31 +0000 | +------------------------------------------------------------------------------+ Arch check ok (loong64 included in any all) +------------------------------------------------------------------------------+ | Build environment Wed, 10 Jun 2026 22:27:32 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-loong64 #1 SMP PREEMPT Debian 7.0.10-1 (2026-05-27) loong64 (loongarch64) Toolchain package versions: binutils_2.46-3 dpkg-dev_1.23.7 g++-15_15.2.0-16 gcc-15_15.2.0-16 libc6-dev_2.42-15 libstdc++-15-dev_15.2.0-16 libstdc++6_16-20260322-1 linux-libc-dev_6.19.13-1 Package versions: autoconf_2.72-6 automake_1:1.18.1-4 autopoint_0.23.2-2 autotools-dev_20240727.1+nmu1 base-files_14+b1 base-passwd_3.6.8+b1 bash_5.3-2 bcftools_1.22-1 binutils_2.46-3 binutils-common_2.46-3 binutils-loongarch64-linux-gnu_2.46-3 bsdextrautils_2.42-4 build-essential_12.12+b1 bzip2_1.0.8-6+b1 comerr-dev_2.1-1.47.4-1 coreutils_9.10-1 cpp_4:15.2.0-5 cpp-15_15.2.0-16 cpp-15-loongarch64-linux-gnu_15.2.0-16 cpp-loongarch64-linux-gnu_4:15.2.0-5 cython3_3.1.6+dfsg-2+b1 dash_0.5.12-12+b1 debconf_1.5.92 debhelper_13.31 debianutils_5.23.2+b1 dh-autoreconf_22 dh-python_7.20260309 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1+b1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 file_1:5.46-5+b1 findutils_4.10.0-3+b1 g++_4:15.2.0-5 g++-15_15.2.0-16 g++-15-loongarch64-linux-gnu_15.2.0-16 g++-loongarch64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-15_15.2.0-16 gcc-15-base_15.2.0-16 gcc-15-loongarch64-linux-gnu_15.2.0-16 gcc-16-base_16-20260322-1 gcc-loongarch64-linux-gnu_4:15.2.0-5 gettext_0.23.2-2 gettext-base_0.23.2-2 grep_3.12-1+b1 groff-base_1.23.0-10+b1 gzip_1.13-1+b1 hostname_3.25+b1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.22.1-2+b1 libacl1_2.3.2-3 libarchive-zip-perl_1.68-1 libasan8_16-20260322-1 libatomic1_16-20260322-1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-3 libblkid1_2.42-4 libbrotli-dev_1.2.0-3 libbrotli1_1.2.0-3 libbz2-1.0_1.0.8-6+b1 libbz2-dev_1.0.8-6+b1 libc-bin_2.42-15 libc-dev-bin_2.42-15 libc-gconv-modules-extra_2.42-15 libc6_2.42-15 libc6-dev_2.42-15 libcap-ng0_0.9.3-1 libcc1-0_16-20260322-1 libcom-err2_1.47.4-1 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46-3 libctf0_2.46-3 libcurl3t64-gnutls_8.20.0~rc2-1 libcurl4-gnutls-dev_8.20.0~rc2-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.282+b2 libdebhelper-perl_13.31 libdeflate-dev_1.23-2+b1 libdeflate0_1.23-2+b1 libdpkg-perl_1.23.7 libelf1t64_0.194-4 libevent-2.1-7t64_2.1.12-stable-10+b2 libexpat1_2.7.5-1 libexpat1-dev_2.7.5-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-16 libgcc-s1_16-20260322-1 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgmp-dev_2:6.3.0+dfsg-5+b1 libgmp10_2:6.3.0+dfsg-5+b1 libgmpxx4ldbl_2:6.3.0+dfsg-5+b1 libgnutls-dane0t64_3.8.12-3 libgnutls28-dev_3.8.12-3 libgnutls30t64_3.8.12-3 libgomp1_16-20260322-1 libgssapi-krb5-2_1.22.1-2+b1 libgssrpc4t64_1.22.1-2+b1 libhogweed6t64_3.10.2-1+b1 libhts-dev_1.22.1+ds2-1+b1 libhts3t64_1.22.1+ds2-1+b1 libhtscodecs2_1.6.6-1 libidn2-0_2.3.8-4+b1 libidn2-dev_2.3.8-4+b1 libisl23_0.27-2 libitm1_16-20260322-1 libjansson4_2.14-2+b4 libjs-sphinxdoc_8.2.3-12 libk5crypto3_1.22.1-2+b1 libkadm5clnt-mit12_1.22.1-2+b1 libkadm5srv-mit12_1.22.1-2+b1 libkdb5-10t64_1.22.1-2+b1 libkeyutils1_1.6.3-6+b1 libkrb5-3_1.22.1-2+b1 libkrb5-dev_1.22.1-2+b1 libkrb5support0_1.22.1-2+b1 libldap-dev_2.6.10+dfsg-1+b1 libldap2_2.6.10+dfsg-1+b1 liblsan0_16-20260322-1 liblzma-dev_5.8.3-1 liblzma5_5.8.3-1 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmd0_1.1.0-2+b2 libmount1_2.42-4 libmpc3_1.3.1-3 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libsasl2-modules-db_2.1.28+dfsg1-11 libselinux1_3.10-1 libsframe3_2.46-3 libsmartcols1_2.42-4 libsqlite3-0_3.46.1-9+b1 libssh2-1-dev_1.11.1-2 libssh2-1t64_1.11.1-2 libssl-dev_3.6.2-1 libssl3t64_3.6.2-1 libstdc++-15-dev_15.2.0-16 libstdc++6_16-20260322-1 libsystemd0_260.1-1 libtasn1-6_4.21.0-2 libtasn1-6-dev_4.21.0-2 libtinfo6_6.6+20251231-1 libtool_2.5.4-11 libtsan2_16-20260322-1 libubsan1_16-20260322-1 libuchardet0_0.0.8-2+b1 libudev1_260.1-1 libunbound8_1.24.2-1+b1 libunistring5_1.4.2-1 libuuid1_2.42-4 libxml2-16_2.15.2+dfsg-0.1 libzstd-dev_1.5.7+dfsg-3+b1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.19.13-1 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260302-1 media-types_14.0.0 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 netbase_6.5 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.2-1 patch_2.8-2+b1 perl_5.40.1-7+b1 perl-base_5.40.1-7+b1 perl-modules-5.40_5.40.1-7 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 python3_3.13.9-3 python3-all_3.13.9-3 python3-all-dev_3.13.9-3 python3-autocommand_2.2.2-4 python3-dev_3.13.9-3 python3-inflect_7.5.0-1 python3-iniconfig_2.1.0-2 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.9-3 python3-more-itertools_10.8.0-1 python3-packaging_26.0-1 python3-pkg-resources_78.1.1-0.1 python3-pluggy_1.6.0-2 python3-pygments_2.19.2+dfsg-1 python3-pytest_9.0.3-1 python3-setuptools_78.1.1-0.1 python3-typeguard_4.4.4-2 python3-typing-extensions_4.15.0-2 python3-zipp_3.23.0-1 python3.13_3.13.12-1 python3.13-dev_3.13.12-1 python3.13-minimal_3.13.12-1 python3.14_3.14.4-1 python3.14-dev_3.14.4-1 python3.14-minimal_3.14.4-1 readline-common_8.3-4 rpcsvc-proto_1.4.3-1+b1 samtools_1.22.1-1 sed_4.9-2+b1 sensible-utils_0.0.26 sysvinit-utils_3.18-1 tabix_1.22.1+ds2-1+b1 tar_1.35+dfsg-4 tzdata_2026a-3 util-linux_2.42-4 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Wed, 10 Jun 2026 22:27:32 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pysam Binary: python3-pysam, python-pysam-tests Architecture: any all Version: 0.23.3+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://pysam.readthedocs.org/en/latest Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix , samtools , bcftools , python3-pytest Package-List: python-pysam-tests deb python optional arch=all python3-pysam deb python optional arch=any Checksums-Sha1: 1b49a3366585afd7a0d97e4a8a76f6c6edbf8d7f 1504032 python-pysam_0.23.3+ds.orig.tar.xz 7bc9556aeedcb1571fd39804eb9968e197416f66 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Checksums-Sha256: 2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 1504032 python-pysam_0.23.3+ds.orig.tar.xz 27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Files: f901cb0c76035311780a8148d00734cb 1504032 python-pysam_0.23.3+ds.orig.tar.xz d24853188d4c0ff3160b32d4c6619401 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Dgit: 06ed25e577b1b799ea2bb4f676c9da59d516cfd3 debian archive/debian/0.23.3+ds-2 https://git.dgit.debian.org/python-pysam -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmkXLa8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr3xBAAlFUQPSpK492NL+m6/Kxsz8hlkUjE 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/usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting python-pysam in /build/reproducible-path/python-pysam-0.23.3+ds dpkg-source: info: unpacking python-pysam_0.23.3+ds.orig.tar.xz dpkg-source: info: unpacking python-pysam_0.23.3+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_remote.patch dpkg-source: info: applying clean_less dpkg-source: info: applying skip-test-on-32-bit.patch clean up apt cache ------------------ Can't exec "apt-get": No such file or directory at /usr/libexec/sbuild-usernsexec line 613. Failed to exec: apt-get: No such file or directory at /usr/libexec/sbuild-usernsexec line 614. E: cleaning the apt cache failed with 512 Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 0.23.3+ds-2+b1 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1776861582 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package python-pysam dpkg-buildpackage: info: source version 0.23.3+ds-2+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by loong64 Build Daemon (loongson-tecnico-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture loong64 debian/rules clean cd tests/pysam_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_auto_clean I: pybuild base:385: python3.14 setup.py clean /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running clean removing '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build' (and everything under it) 'build/bdist.linux-loongarch64' does not exist -- can't clean it 'build/scripts-3.14' does not exist -- can't clean it I: pybuild base:385: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running clean removing '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build' (and everything under it) 'build/bdist.linux-loongarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -f \ pysam/config.py \ pysam/config.h \ pysam/lib*.c \ samtools/config.h \ bcftools/config.h rm -rf pysam.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:385: python3.14 setup.py config /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running config I: pybuild base:385: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:385: /usr/bin/python3.14 setup.py build /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running build running build_py creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include running egg_info creating pysam.egg-info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt writing manifest file 'pysam.egg-info/SOURCES.txt' reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4 copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools running build_ext checking for loongarch64-linux-gnu-gcc option to enable C99 features... creating build/temp.linux-loongarch64-cpython-314/pysam loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c pysam/conftest_cstd.c -o build/temp.linux-loongarch64-cpython-314/pysam/conftest_cstd.o loongarch64-linux-gnu-gcc option to enable C99 features: none needed Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/htslib_util.c -o build/temp.linux-loongarch64-cpython-314/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libchtslib.c -o build/temp.linux-loongarch64-cpython-314/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/htslib_util.o build/temp.linux-loongarch64-cpython-314/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-loongarch64-cpython-314/samtools creating build/temp.linux-loongarch64-cpython-314/samtools/lz4 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcsamtools.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_color.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_import.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_index.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_md.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_split.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bamtk.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bedcov.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/bedidx.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/coverage.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/cram_size.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/cut_target.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/dict.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/faidx.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/lz4/lz4.c -o build/temp.linux-loongarch64-cpython-314/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/padding.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/phase.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/reference.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/reset.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/sam_view.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/sample.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/samtools.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/stats.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcsamtools.o build/temp.linux-loongarch64-cpython-314/samtools/amplicon_stats.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam2depth.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_addrprg.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_aux.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_cat.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_color.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_consensus.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_fastq.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_flags.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_import.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_index.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_lpileup.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_markdup.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_mate.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_md.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_plbuf.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_plcmd.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_quickcheck.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_reheader.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_rmdup.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_rmdupse.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_samples.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_sort.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_split.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bam_stat.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bamshuf.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bamtk.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bedcov.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/bedidx.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/consensus_pileup.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/coverage.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/cram_size.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/cut_target.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/dict.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/faidx.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/lz4/lz4.o build/temp.linux-loongarch64-cpython-314/samtools/padding.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/phase.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/reference.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/reset.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/sam_opts.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/sam_utils.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/sam_view.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/sample.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/samtools.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/stats.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/stats_isize.c.pysam.o build/temp.linux-loongarch64-cpython-314/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-loongarch64-cpython-314/bcftools loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/HMM.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/abuf.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bcftools.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/bin.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/ccall.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/cols.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/consensus.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/convert.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/csq.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/dist.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/edlib.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/em.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/extsort.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/filter.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/gff.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/hclust.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/kmin.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/main.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/mcall.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/prob1.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/regidx.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/reheader.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/tabix.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c bcftools/version.c.pysam.c -o build/temp.linux-loongarch64-cpython-314/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcbcftools.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/bcftools/HMM.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/abuf.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/bam2bcf.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/bam_sample.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/bcftools.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/bin.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/ccall.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/cols.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/consensus.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/convert.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/csq.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/dist.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/edlib.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/em.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/extsort.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/filter.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/gff.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/gvcf.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/hclust.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/kmin.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/main.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/mcall.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/mpileup.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/ploidy.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/prob1.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/read_consensus.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/regidx.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/reheader.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/smpl_ilist.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/str_finder.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/tabix.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/tsv2vcf.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfannotate.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfbuf.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfcall.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfcnv.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfconcat.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfconvert.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcffilter.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfhead.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfindex.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfisec.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfmerge.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfnorm.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfplugin.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfquery.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfroh.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfsom.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfsort.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfstats.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcfview.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/vcmp.c.pysam.o build/temp.linux-loongarch64-cpython-314/bcftools/version.c.pysam.o build/temp.linux-loongarch64-cpython-314/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcutils.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/pysam_util.c -o build/temp.linux-loongarch64-cpython-314/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcutils.o build/temp.linux-loongarch64-cpython-314/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcsamtools.cpython-314-loongarch64-linux-gnu -lcbcftools.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2564:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2569:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2574:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2613:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2618:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2623:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcalignmentfile.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcsamfile.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcalignedsegment.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libctabix.c -o build/temp.linux-loongarch64-cpython-314/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcfaidx.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcbcf.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcbgzf.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libctabixproxies.c -o build/temp.linux-loongarch64-cpython-314/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.14 -c pysam/libcvcf.c -o build/temp.linux-loongarch64-cpython-314/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-314-loongarch64-linux-gnu -lcutils.cpython-314-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.cpython-314-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN I: pybuild base:385: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running build running build_py creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext checking for loongarch64-linux-gnu-gcc option to enable C99 features... creating build/temp.linux-loongarch64-cpython-313/pysam loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c pysam/conftest_cstd.c -o build/temp.linux-loongarch64-cpython-313/pysam/conftest_cstd.o loongarch64-linux-gnu-gcc option to enable C99 features: none needed building 'pysam.libchtslib' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/htslib_util.c -o build/temp.linux-loongarch64-cpython-313/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libchtslib.c -o build/temp.linux-loongarch64-cpython-313/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/htslib_util.o build/temp.linux-loongarch64-cpython-313/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension building 'pysam.libcsamtools' extension creating build/temp.linux-loongarch64-cpython-313/samtools creating build/temp.linux-loongarch64-cpython-313/samtools/lz4 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcsamtools.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_color.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_import.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_index.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_md.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_split.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bamtk.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bedcov.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bedidx.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/coverage.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/cram_size.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/cut_target.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/dict.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/faidx.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/lz4/lz4.c -o build/temp.linux-loongarch64-cpython-313/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/padding.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/phase.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/reference.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/reset.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_view.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sample.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/samtools.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/stats.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcsamtools.o build/temp.linux-loongarch64-cpython-313/samtools/amplicon_stats.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam2depth.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_addrprg.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_aux.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_cat.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_color.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_consensus.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_fastq.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_flags.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_import.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_index.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_lpileup.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_markdup.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_mate.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_md.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_plbuf.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_plcmd.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_quickcheck.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_reheader.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_rmdup.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_rmdupse.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_samples.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_sort.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_split.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bam_stat.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bamshuf.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bamtk.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bedcov.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/bedidx.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/consensus_pileup.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/coverage.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/cram_size.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/cut_target.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/dict.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/faidx.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/lz4/lz4.o build/temp.linux-loongarch64-cpython-313/samtools/padding.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/phase.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/reference.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/reset.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/sam_opts.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/sam_utils.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/sam_view.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/sample.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/samtools.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/stats.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/stats_isize.c.pysam.o build/temp.linux-loongarch64-cpython-313/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcbcftools' extension creating build/temp.linux-loongarch64-cpython-313/bcftools loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/HMM.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/abuf.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bcftools.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bin.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/ccall.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/cols.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/consensus.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/convert.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/csq.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/dist.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/edlib.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/em.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/extsort.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/filter.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/gff.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/hclust.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/kmin.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/main.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/mcall.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/prob1.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/regidx.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/reheader.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/tabix.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/version.c.pysam.c -o build/temp.linux-loongarch64-cpython-313/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbcftools.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/bcftools/HMM.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/abuf.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/bam2bcf.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/bam_sample.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/bcftools.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/bin.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/ccall.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/cols.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/consensus.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/convert.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/csq.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/dist.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/edlib.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/em.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/extsort.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/filter.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/gff.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/gvcf.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/hclust.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/kmin.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/main.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/mcall.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/mpileup.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/ploidy.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/prob1.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/read_consensus.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/regidx.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/reheader.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/smpl_ilist.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/str_finder.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/tabix.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/tsv2vcf.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfannotate.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfbuf.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfcall.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfcnv.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfconcat.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfconvert.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcffilter.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfhead.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfindex.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfisec.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfmerge.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfnorm.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfplugin.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfquery.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfroh.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfsom.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfsort.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfstats.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcfview.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/vcmp.c.pysam.o build/temp.linux-loongarch64-cpython-313/bcftools/version.c.pysam.o build/temp.linux-loongarch64-cpython-313/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcutils' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcutils.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/pysam_util.c -o build/temp.linux-loongarch64-cpython-313/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcutils.o build/temp.linux-loongarch64-cpython-313/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcsamtools.cpython-313-loongarch64-linux-gnu -lcbcftools.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcalignmentfile' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcalignmentfile.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcsamfile' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcsamfile.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcalignedsegment' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcalignedsegment.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libctabix' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libctabix.c -o build/temp.linux-loongarch64-cpython-313/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcfaidx' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcfaidx.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcbcf' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbcf.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcbgzf' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbgzf.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libctabixproxies' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libctabixproxies.c -o build/temp.linux-loongarch64-cpython-313/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN building 'pysam.libcvcf' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcvcf.c -o build/temp.linux-loongarch64-cpython-313/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/loongarch64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/loongarch64-linux-gnu -lz -lhts -lchtslib.cpython-313-loongarch64-linux-gnu -lcutils.cpython-313-loongarch64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-loongarch64-linux-gnu.so -Wl,-rpath,$ORIGIN debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' cd tests/pysam_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' samtools faidx ex1.fa samtools view --no-PG -bo ex1.bam -t ex1.fa.fai ex1.sam.gz samtools mpileup -f ex1.fa ex1.bam | gzip > ex1.pileup.gz [mpileup] 1 samples in 1 input files gunzip < ex1.sam.gz > ex1.sam samtools index ex1.bam samtools view --no-PG -h ex1.bam | gzip > ex2.sam.gz gunzip < ex2.sam.gz > ex2.sam samtools view --no-PG -bo ex2.bam ex2.sam samtools index ex2.bam samtools calmd --no-PG --output-fmt BAM ex2.bam ex1.fa > with_md.sam.gz [bam_fillmd1] different NM for read 'EAS139_11:7:46:695:738': 3 -> 8 [bam_fillmd1] different NM for read 'EAS218_4:1:48:9:409': 0 -> 5 [bam_fillmd1] different NM for read 'B7_591:7:200:192:373': 0 -> 5 [bam_fillmd1] different NM for read 'EAS56_65:1:163:846:223': 0 -> 5 [bam_fillmd1] different NM for read 'EAS114_30:7:283:799:560': 0 -> 5 [bam_fillmd1] different NM for read 'B7_595:4:84:802:737': 0 -> 4 [bam_fillmd1] different NM for read 'EAS51_66:5:308:400:602': 0 -> 3 [bam_fillmd1] different NM for read 'EAS54_81:2:285:367:932': 0 -> 3 [bam_fillmd1] different NM for read 'EAS114_39:1:70:147:84': 0 -> 3 [bam_fillmd1] different NM for read 'EAS56_53:1:124:243:35': 2 -> 5 [bam_fillmd1] different NM for read 'EAS1_103:2:226:302:758': 2 -> 3 [bam_fillmd1] different NM for read 'EAS114_28:6:175:705:982': 1 -> 0 [bam_fillmd1] different NM for read 'EAS51_64:4:179:389:585': 7 -> 8 [bam_fillmd1] different NM for read 'B7_589:1:122:337:968': 3 -> 2 [bam_fillmd1] different NM for read 'B7_610:4:15:805:420': 4 -> 5 [bam_fillmd1] different NM for read 'B7_591:2:279:124:41': 2 -> 4 [bam_fillmd1] different NM for read 'EAS112_32:8:89:254:332': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:7:103:731:697': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_11:2:71:83:58': 0 -> 2 [bam_fillmd1] different NM for read 'EAS192_3:4:63:5:870': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:29:1822:1881': 0 -> 2 [bam_fillmd1] different NM for read 'EAS188_7:3:15:568:42': 2 -> 1 [bam_fillmd1] different NM for read 'EAS1_95:4:176:971:874': 0 -> 1 [bam_fillmd1] different NM for read 'EAS1_99:1:34:649:318': 3 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:4:61:346:384': 3 -> 4 [bam_fillmd1] different NM for read 'B7_597:6:20:592:496': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:4:38:999:463': 2 -> 1 [bam_fillmd1] different NM for read 'EAS114_28:5:23:944:377': 0 -> 3 [bam_fillmd1] different NM for read 'EAS219_1:3:90:219:528': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_108:5:89:942:84': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:6:159:493:275': 0 -> 5 [bam_fillmd1] different NM for read 'EAS139_11:1:81:1019:558': 0 -> 5 [bam_fillmd1] different NM for read 'EAS51_62:7:162:195:761': 0 -> 4 [bam_fillmd1] different NM for read 'B7_597:3:115:646:430': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:243:209:110': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:2:266:994:429': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:5:32:461:154': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:6:7:492:1088': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_95:6:174:650:125': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:6:89:457:591': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_39:2:38:670:564': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_7:4:92:693:228': 1 -> 6 [bam_fillmd1] different NM for read 'EAS218_1:4:61:1369:440': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_26:4:123:1001:580': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:4:10:1312:1558': 0 -> 4 [bam_fillmd1] different NM for read 'EAS220_1:8:45:178:1321': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:5:125:137:58': 0 -> 4 [bam_fillmd1] different NM for read 'EAS192_3:3:285:349:797': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_45:5:56:1757:1319': 0 -> 4 [bam_fillmd1] different NM for read 'B7_591:3:291:404:199': 0 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:7:159:253:353': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_57:1:122:38:103': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_4:5:103:870:105': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:8:24:718:322': 3 -> 7 [bam_fillmd1] different NM for read 'EAS51_64:6:118:41:489': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_61:3:165:665:220': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:238:803:383': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:3:232:364:583': 0 -> 3 [bam_fillmd1] different NM for read 'B7_595:2:29:729:70': 3 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:220:809:850': 4 -> 6 [bam_fillmd1] different NM for read 'EAS54_65:2:264:157:150': 3 -> 5 [bam_fillmd1] different NM for read 'B7_595:8:26:242:35': 2 -> 1 [bam_fillmd1] different NM for read 'B7_610:7:34:144:868': 4 -> 5 [bam_fillmd1] different NM for read 'B7_597:8:147:360:141': 1 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:82:154:1333': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_63:3:41:468:459': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_97:4:274:287:423': 0 -> 1 [bam_fillmd1] different NM for read 'EAS114_30:2:303:428:326': 0 -> 1 [bam_fillmd1] different NM for read 'EAS54_71:8:105:854:975': 0 -> 3 gunzip < with_md.sam.gz > with_md.sam samtools view --no-PG -bo with_md.bam with_md.sam [W::bam_hdr_read] EOF marker is absent. The input is probably truncated samtools index with_md.bam samtools view --no-PG -bu -o uncompressed.bam ex2.sam samtools view --no-PG -bo MM-chebi.bam MM-chebi.sam samtools view --no-PG -bo MM-double.bam MM-double.sam samtools view --no-PG -bo MM-explicit.bam MM-explicit.sam samtools view --no-PG -bo MM-multi.bam MM-multi.sam samtools view --no-PG -bo MM-orient.bam MM-orient.sam samtools view --no-PG -bo ex10.bam ex10.sam samtools view --no-PG -bo ex3.bam ex3.sam samtools view --no-PG -bo ex4.bam ex4.sam samtools view --no-PG -bo ex5.bam ex5.sam samtools view --no-PG -bo ex6.bam ex6.sam samtools view --no-PG -bo ex8.bam ex8.sam samtools view --no-PG -bo ex9_fail.bam ex9_fail.sam samtools view --no-PG -bo ex9_nofail.bam ex9_nofail.sam samtools view --no-PG -bo ex_spliced.bam ex_spliced.sam samtools view --no-PG -bo example_aligned_pairs.bam example_aligned_pairs.sam samtools view --no-PG -bo example_btag.bam example_btag.sam samtools view --no-PG -bo example_dash_in_chr.bam example_dash_in_chr.sam samtools view --no-PG -bo example_empty_header.bam example_empty_header.sam samtools view --no-PG -bo example_empty_with_header.bam example_empty_with_header.sam samtools view --no-PG -bo example_reverse_complement.bam example_reverse_complement.sam touch tmp.list samtools view --no-PG -bo example_unmapped_reads_no_sq.bam -t tmp.list example_unmapped_reads_no_sq.sam rm -f tmp.list samtools view --no-PG -bo issue100.bam issue100.sam samtools view --no-PG -bo rg_with_tab.bam rg_with_tab.sam samtools view --no-PG -bo softclip.bam softclip.sam samtools view --no-PG -bo tag_bug.bam tag_bug.sam samtools view --no-PG -bo test_mapped_unmapped.bam test_mapped_unmapped.sam samtools view --no-PG -bo test_query_position.bam test_query_position.sam samtools view --no-PG -bo test_unaligned.bam test_unaligned.sam samtools index MM-chebi.bam samtools index MM-double.bam samtools index MM-explicit.bam samtools index MM-multi.bam samtools index MM-orient.bam samtools index ex10.bam samtools index ex3.bam samtools index ex4.bam samtools index ex5.bam samtools index ex6.bam samtools index ex8.bam samtools index ex9_fail.bam samtools index ex9_nofail.bam samtools index ex_spliced.bam samtools index example_aligned_pairs.bam samtools index example_btag.bam samtools index example_dash_in_chr.bam samtools index example_empty_header.bam samtools index example_empty_with_header.bam samtools index example_reverse_complement.bam samtools index example_unmapped_reads_no_sq.bam samtools index issue100.bam samtools index rg_with_tab.bam samtools index softclip.bam samtools index tag_bug.bam samtools index test_mapped_unmapped.bam samtools index test_query_position.bam samtools index test_unaligned.bam samtools view --no-PG -Co ex1.cram -T ex1.fa ex1.sam samtools view --no-PG -Co ex2.cram -T ex1.fa ex2.sam samtools view --no-PG -Co ex3.cram -T ex1.fa ex3.sam samtools index ex1.cram samtools index ex2.cram samtools index ex3.cram cp ex1.bam example_bai.bam samtools index example_bai.bam mv example_bai.bam.bai example_bai.bai dd if=ex2.bam of=ex2_truncated.bam bs=$((`wc -c < ex2.bam`-512)) count=1 1+0 records in 1+0 records out 122288 bytes (122 kB, 119 KiB) copied, 0.00023836 s, 513 MB/s (bgzip -d < ex2.bam; printf '\37\0\0\0\1\0\0\0') | bgzip > ex2_corrupt.bam grep "^@" ex2.sam | samtools view --no-PG -bo empty.bam - samtools index empty.bam cp ex1.bam explicit_index.bam cp ex1.cram explicit_index.cram gzip < faidx_empty_seq.fq > faidx_empty_seq.fq.gz bgzip < ex1.fa > ex1.fa.gz samtools faidx ex1.fa.gz cp ex1.bam ex1_csi.bam samtools index -c ex1_csi.bam touch all.stamp rm with_md.sam make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' bgzip < example_vcf40.vcf > example_vcf40.vcf.gz tabix -f -p vcf example_vcf40.vcf.gz # create tbi index bcftools index -f example_vcf40.vcf.gz # create csi index bgzip < example_vcf42.vcf > example_vcf42.vcf.gz tabix -f -p vcf example_vcf42.vcf.gz # create tbi index bcftools index -f example_vcf42.vcf.gz # create csi index bgzip < example_vcf42_only_header.vcf > example_vcf42_only_header.vcf.gz tabix -f -p vcf example_vcf42_only_header.vcf.gz # create tbi index bcftools index -f example_vcf42_only_header.vcf.gz # create csi index bgzip < example_vcf42_withcontigs.vcf > example_vcf42_withcontigs.vcf.gz tabix -f -p vcf example_vcf42_withcontigs.vcf.gz # create tbi index bcftools index -f example_vcf42_withcontigs.vcf.gz # create csi index bgzip < example_vcf43.vcf > example_vcf43.vcf.gz tabix -f -p vcf example_vcf43.vcf.gz # create tbi index bcftools index -f example_vcf43.vcf.gz # create csi index bgzip < example_vcf43_with_utf8.vcf > example_vcf43_with_utf8.vcf.gz tabix -f -p vcf example_vcf43_with_utf8.vcf.gz # create tbi index bcftools index -f example_vcf43_with_utf8.vcf.gz # create csi index bgzip < gnomad.vcf > gnomad.vcf.gz tabix -f -p vcf gnomad.vcf.gz # create tbi index bcftools index -f gnomad.vcf.gz # create csi index bgzip < gnomad_fixed.vcf > gnomad_fixed.vcf.gz tabix -f -p vcf gnomad_fixed.vcf.gz # create tbi index bcftools index -f gnomad_fixed.vcf.gz # create csi index bgzip < missing_genotypes.vcf > missing_genotypes.vcf.gz tabix -f -p vcf missing_genotypes.vcf.gz # create tbi index bcftools index -f missing_genotypes.vcf.gz # create csi index bcftools view -O b example_vcf40.vcf.gz -o example_vcf40.bcf bcftools index -f example_vcf40.bcf bcftools view -O b example_vcf42.vcf.gz -o example_vcf42.bcf bcftools index -f example_vcf42.bcf bcftools view -O b example_vcf42_only_header.vcf.gz -o example_vcf42_only_header.bcf bcftools index -f example_vcf42_only_header.bcf bcftools view -O b example_vcf42_withcontigs.vcf.gz -o example_vcf42_withcontigs.bcf bcftools index -f example_vcf42_withcontigs.bcf bcftools view -O b example_vcf43.vcf.gz -o example_vcf43.bcf bcftools index -f example_vcf43.bcf bcftools view -O b example_vcf43_with_utf8.vcf.gz -o example_vcf43_with_utf8.bcf bcftools index -f example_vcf43_with_utf8.bcf bcftools view -O b gnomad.vcf.gz -o gnomad.bcf bcftools index -f gnomad.bcf bcftools view -O b gnomad_fixed.vcf.gz -o gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools index -f gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools view -O b missing_genotypes.vcf.gz -o missing_genotypes.bcf bcftools index -f missing_genotypes.bcf touch all.stamp make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' dh_auto_test I: pybuild base:385: cd /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build; python3.14 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.14.4, pytest-9.0.3, pluggy-1.6.0 -- /usr/bin/python3.14 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pysam-0.23.3+ds configfile: setup.cfg plugins: typeguard-4.4.4 collecting ... collected 975 items / 1 skipped tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQualStr PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testStrOfEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayB PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayI PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualList PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualTuple PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects1 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateTlen PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_mapped_reads_are_updated PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_unmapped_reads_ignore_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_equivalence_matches_only_and_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_1character_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_bad_type_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_hard_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_lowercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_match_mismatch PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_via_cigarstring PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip_reference PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_soft_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_uppercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_with_malformed_MD_tag PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_header_accessible PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_query_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_read_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_query_length_is_limited PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_equal PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestCigar::testCigar PASSED tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED tests/AlignedSegment_test.py::TestBaseModifications::testDouble PASSED tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED tests/AlignedSegment_test.py::TestBaseModifications::testMulti PASSED tests/AlignedSegment_test.py::TestBaseModifications::testOrient PASSED tests/AlignedSegment_test.py::TestTags::testAddTags PASSED tests/AlignedSegment_test.py::TestTags::testAddTagsType PASSED tests/AlignedSegment_test.py::TestTags::testArrayTags PASSED tests/AlignedSegment_test.py::TestTags::testEmptyTag PASSED tests/AlignedSegment_test.py::TestTags::testLongTags PASSED tests/AlignedSegment_test.py::TestTags::testMDTagComplex PASSED tests/AlignedSegment_test.py::TestTags::testMDTagDeletions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagInsertions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED tests/AlignedSegment_test.py::TestTags::testMDTagRefSkipping PASSED tests/AlignedSegment_test.py::TestTags::testMDTagSoftClipping PASSED tests/AlignedSegment_test.py::TestTags::testMissingTag PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegersWrittenToFile PASSED tests/AlignedSegment_test.py::TestTags::testSetTag PASSED tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED tests/AlignedSegment_test.py::TestCopy::testCopy PASSED tests/AlignedSegment_test.py::TestCopy::testDeepCopy PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_q8ua88ch' PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575 [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_v94tgpi9' PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED tests/AlignmentFile_test.py::TestIO::testHead PASSED tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testCRAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges PASSED tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED tests/AlignmentFile_test.py::TestClipping::testClipping PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED tests/AlignmentFile_test.py::TestContextManager::testManager PASSED tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated [E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094 [E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes PASSED tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory PASSED tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED tests/VariantFile_test.py::TestHeader::testIterator PASSED tests/VariantFile_test.py::TestHeader::testStr PASSED tests/VariantFile_test.py::TestParsing::testAlleles PASSED tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED tests/VariantFile_test.py::TestParsing::testAlt PASSED tests/VariantFile_test.py::TestParsing::testChrom PASSED tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED tests/VariantFile_test.py::TestParsing::testFilter PASSED tests/VariantFile_test.py::TestParsing::testFormat PASSED tests/VariantFile_test.py::TestParsing::testId PASSED tests/VariantFile_test.py::TestParsing::testInfo PASSED tests/VariantFile_test.py::TestParsing::testPos PASSED tests/VariantFile_test.py::TestParsing::testQual PASSED tests/VariantFile_test.py::TestParsing::testRef PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED tests/VariantFile_test.py::TestParsing::testStart PASSED tests/VariantFile_test.py::TestParsing::testStop PASSED tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) (0, 0) PASSED tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_doujaufu.bcf' PASSED tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_set_sample_alleles PASSED tests/VariantRecord_test.py::test_repeated_new_record PASSED tests/compile_test.py::test_bam PASSED tests/compile_test.py::test_gtf PASSED tests/compile_test.py::TestBinaryCompatibility::test_alignments PASSED tests/compile_test.py::TestBinaryCompatibility::test_variants PASSED tests/faidx_test.py::TestFastaFile::testFetch PASSED tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED tests/faidx_test.py::TestFastaFile::testLength PASSED tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED tests/faidx_test.py::TestFastxFileFastq::testManager PASSED tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED tests/faidx_test.py::TestFastqFileFastq::testManager PASSED tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED tests/faidx_test.py::TestFastxFileFasta::testManager PASSED tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED tests/samtools_test.py::SamtoolsTest::testStatements PASSED tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...) tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingBCFtools [E::hts_open_format] Failed to open file "nonexistent.vcf" : No such file or directory PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingSamtools [E::hts_open_format] Failed to open file "nonexistent.bam" : No such file or directory PASSED tests/samtools_test.py::TestReturnType::testReturnValueData PASSED tests/samtools_test.py::TestReturnType::testReturnValueString PASSED tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED tests/samtools_test.py::StdoutTest::testSaveStdout PASSED tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED tests/samtools_test.py::PysamTest::testStatements PASSED tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...) tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED tests/tabix_test.py::TestCompression::testCompression PASSED tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionSam::testCompression PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionBed::testCompression PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionVCF::testCompression PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestGZFile::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED tests/tabix_test.py::TestIterationWithComments::testAll PASSED tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithComments::testHeader PASSED tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithComments::testReopening PASSED tests/tabix_test.py::TestIterators::testClosedFile PASSED tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED tests/tabix_test.py::TestIterators::testIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED tests/tabix_test.py::TestBed::testRead PASSED tests/tabix_test.py::TestBed::testWrite PASSED tests/tabix_test.py::TestUnicode::testFromTabix PASSED tests/tabix_test.py::TestUnicode::testFromVCF PASSED tests/tabix_test.py::TestVCFFromTabix::testRead PASSED tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs: #CHROM POS ID REF ALT QUAL FILTER INFO PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::bcf_hdr_check_sanity] GL should be declared as Number=G PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED tests/tabix_test.py::TestMultipleIterators::testScope PASSED tests/tabix_test.py::TestContextManager::testManager PASSED tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testCopy PASSED tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestParser::testRead PASSED tests/tabixproxies_test.py::TestParser::testUnset PASSED tests/tabixproxies_test.py::TestParser::testWrite PASSED tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGTF::testCopy PASSED tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGTF::testRead PASSED tests/tabixproxies_test.py::TestGTF::testUnset PASSED tests/tabixproxies_test.py::TestGTF::testWrite PASSED tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGFF3::testCopy PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGFF3::testRead PASSED tests/tabixproxies_test.py::TestGFF3::testUnset PASSED tests/tabixproxies_test.py::TestGFF3::testWrite PASSED tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED tests/test_samtools_python.py::test_bedcov_split_lines PASSED tests/test_samtools_python.py::test_idxstats_parse PASSED tests/test_samtools_python.py::test_bedcov PASSED =============================== warnings summary =============================== .pybuild/cpython3_3.14_pysam/build/tests/samtools_test.py::SamtoolsTest::testStatements .pybuild/cpython3_3.14_pysam/build/tests/samtools_test.py::PysamTest::testStatements /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/tests/samtools_test.py:138: UserWarning: versions of pysam.samtools and samtools differ: 1.21 != 1.22.1 warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 964 passed, 12 skipped, 2 warnings in 54.24s ================= I: pybuild base:385: cd /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.12, pytest-9.0.3, pluggy-1.6.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pysam-0.23.3+ds configfile: setup.cfg plugins: typeguard-4.4.4 collecting ... collected 975 items / 1 skipped tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQualStr PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testStrOfEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayB PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayI PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualList PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualTuple PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects1 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateTlen PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_mapped_reads_are_updated PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_unmapped_reads_ignore_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_equivalence_matches_only_and_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_1character_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_bad_type_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_hard_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_lowercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_match_mismatch PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_via_cigarstring PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip_reference PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_soft_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_uppercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_with_malformed_MD_tag PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_header_accessible PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_query_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_read_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_query_length_is_limited PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_equal PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestCigar::testCigar PASSED tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED tests/AlignedSegment_test.py::TestBaseModifications::testDouble PASSED tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED tests/AlignedSegment_test.py::TestBaseModifications::testMulti PASSED tests/AlignedSegment_test.py::TestBaseModifications::testOrient PASSED tests/AlignedSegment_test.py::TestTags::testAddTags PASSED tests/AlignedSegment_test.py::TestTags::testAddTagsType PASSED tests/AlignedSegment_test.py::TestTags::testArrayTags PASSED tests/AlignedSegment_test.py::TestTags::testEmptyTag PASSED tests/AlignedSegment_test.py::TestTags::testLongTags PASSED tests/AlignedSegment_test.py::TestTags::testMDTagComplex PASSED tests/AlignedSegment_test.py::TestTags::testMDTagDeletions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagInsertions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED tests/AlignedSegment_test.py::TestTags::testMDTagRefSkipping PASSED tests/AlignedSegment_test.py::TestTags::testMDTagSoftClipping PASSED tests/AlignedSegment_test.py::TestTags::testMissingTag PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegersWrittenToFile PASSED tests/AlignedSegment_test.py::TestTags::testSetTag PASSED tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED tests/AlignedSegment_test.py::TestCopy::testCopy PASSED tests/AlignedSegment_test.py::TestCopy::testDeepCopy PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_cgv409_f' PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575 [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_f2uumdzf' PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED tests/AlignmentFile_test.py::TestIO::testHead PASSED tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testCRAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges PASSED tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED tests/AlignmentFile_test.py::TestClipping::testClipping PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED tests/AlignmentFile_test.py::TestContextManager::testManager PASSED tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated [E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094 [E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes PASSED tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory PASSED tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED tests/VariantFile_test.py::TestHeader::testIterator PASSED tests/VariantFile_test.py::TestHeader::testStr PASSED tests/VariantFile_test.py::TestParsing::testAlleles PASSED tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED tests/VariantFile_test.py::TestParsing::testAlt PASSED tests/VariantFile_test.py::TestParsing::testChrom PASSED tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED tests/VariantFile_test.py::TestParsing::testFilter PASSED tests/VariantFile_test.py::TestParsing::testFormat PASSED tests/VariantFile_test.py::TestParsing::testId PASSED tests/VariantFile_test.py::TestParsing::testInfo PASSED tests/VariantFile_test.py::TestParsing::testPos PASSED tests/VariantFile_test.py::TestParsing::testQual PASSED tests/VariantFile_test.py::TestParsing::testRef PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED tests/VariantFile_test.py::TestParsing::testStart PASSED tests/VariantFile_test.py::TestParsing::testStop PASSED tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) (0, 0) PASSED tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_i3xn2789.bcf' PASSED tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_set_sample_alleles PASSED tests/VariantRecord_test.py::test_repeated_new_record PASSED tests/compile_test.py::test_bam PASSED tests/compile_test.py::test_gtf PASSED tests/compile_test.py::TestBinaryCompatibility::test_alignments PASSED tests/compile_test.py::TestBinaryCompatibility::test_variants PASSED tests/faidx_test.py::TestFastaFile::testFetch PASSED tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED tests/faidx_test.py::TestFastaFile::testLength PASSED tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED tests/faidx_test.py::TestFastxFileFastq::testManager PASSED tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED tests/faidx_test.py::TestFastqFileFastq::testManager PASSED tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED tests/faidx_test.py::TestFastxFileFasta::testManager PASSED tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED tests/samtools_test.py::SamtoolsTest::testStatements PASSED tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...) tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingBCFtools [E::hts_open_format] Failed to open file "nonexistent.vcf" : No such file or directory PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingSamtools [E::hts_open_format] Failed to open file "nonexistent.bam" : No such file or directory PASSED tests/samtools_test.py::TestReturnType::testReturnValueData PASSED tests/samtools_test.py::TestReturnType::testReturnValueString PASSED tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED tests/samtools_test.py::StdoutTest::testSaveStdout PASSED tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED tests/samtools_test.py::PysamTest::testStatements PASSED tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...) tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED tests/tabix_test.py::TestCompression::testCompression PASSED tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionSam::testCompression PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionBed::testCompression PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionVCF::testCompression PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestGZFile::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED tests/tabix_test.py::TestIterationWithComments::testAll PASSED tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithComments::testHeader PASSED tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithComments::testReopening PASSED tests/tabix_test.py::TestIterators::testClosedFile PASSED tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED tests/tabix_test.py::TestIterators::testIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED tests/tabix_test.py::TestBed::testRead PASSED tests/tabix_test.py::TestBed::testWrite PASSED tests/tabix_test.py::TestUnicode::testFromTabix PASSED tests/tabix_test.py::TestUnicode::testFromVCF PASSED tests/tabix_test.py::TestVCFFromTabix::testRead PASSED tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs: #CHROM POS ID REF ALT QUAL FILTER INFO PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::bcf_hdr_check_sanity] GL should be declared as Number=G PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED tests/tabix_test.py::TestMultipleIterators::testScope PASSED tests/tabix_test.py::TestContextManager::testManager PASSED tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testCopy PASSED tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestParser::testRead PASSED tests/tabixproxies_test.py::TestParser::testUnset PASSED tests/tabixproxies_test.py::TestParser::testWrite PASSED tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGTF::testCopy PASSED tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGTF::testRead PASSED tests/tabixproxies_test.py::TestGTF::testUnset PASSED tests/tabixproxies_test.py::TestGTF::testWrite PASSED tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGFF3::testCopy PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGFF3::testRead PASSED tests/tabixproxies_test.py::TestGFF3::testUnset PASSED tests/tabixproxies_test.py::TestGFF3::testWrite PASSED tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED tests/test_samtools_python.py::test_bedcov_split_lines PASSED tests/test_samtools_python.py::test_idxstats_parse PASSED tests/test_samtools_python.py::test_bedcov PASSED =============================== warnings summary =============================== .pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py::SamtoolsTest::testStatements .pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py::PysamTest::testStatements /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py:138: UserWarning: versions of pysam.samtools and samtools differ: 1.21 != 1.22.1 warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 964 passed, 12 skipped, 2 warnings in 55.96s ================= make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:385: /usr/bin/python3.14 setup.py install --root /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools running build_ext checking for loongarch64-linux-gnu-gcc option to enable C99 features... loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c pysam/conftest_cstd.c -o build/temp.linux-loongarch64-cpython-314/pysam/conftest_cstd.o loongarch64-linux-gnu-gcc option to enable C99 features: none needed creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension running install_lib creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/Pileup.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/version.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/__init__.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/bcftools.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/samtools.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/utils.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__pycache__/config.cpython-314.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcvcf.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libchtslib.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.14_pysam/build/pysam/libcsamfile.cpython-314-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/bcftools.py to bcftools.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/samtools.py to samtools.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/Pileup.py to Pileup.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/version.py to version.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/__init__.py to __init__.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/config.py to config.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/utils.py to utils.cpython-314.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/__init__.py to __init__.cpython-314.pyc running install_egg_info Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam-0.23.3.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:385: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext checking for loongarch64-linux-gnu-gcc option to enable C99 features... loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c pysam/conftest_cstd.c -o build/temp.linux-loongarch64-cpython-313/pysam/conftest_cstd.o loongarch64-linux-gnu-gcc option to enable C99 features: none needed creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension running install_lib creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/bcftools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/config.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/Pileup.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/samtools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-loongarch64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/bcftools.py to bcftools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/samtools.py to samtools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/Pileup.py to Pileup.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/config.py to config.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam-0.23.3.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' cd tests/pysam_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh_install -Xtest.gtf.gz find debian -name log.txt -delete find debian -name LICENSE -delete make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild W: dh_python3 fs:146: Paths differ: debian/python3-pysam/usr/lib/python3.14/dist-packages/pysam/include/samtools/samtools_config_vars.h and debian/python3-pysam/usr/lib/python3/dist-packages/pysam/include/samtools/samtools_config_vars.h dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-loongarch-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-loongarch-lp64d.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-pysam-dbgsym' in '../python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb'. dpkg-deb: building package 'python3-pysam' in '../python3-pysam_0.23.3+ds-2+b1_loong64.deb'. dpkg-genbuildinfo --build=any -O../python-pysam_0.23.3+ds-2+b1_loong64.buildinfo dpkg-genchanges --build=any -O../python-pysam_0.23.3+ds-2+b1_loong64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-06-10T22:45:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 10 Jun 2026 22:45:07 +0000 | +------------------------------------------------------------------------------+ python-pysam_0.23.3+ds-2+b1_loong64.changes: -------------------------------------------- Format: 1.8 Date: Wed, 22 Apr 2026 12:39:42 +0000 Source: python-pysam (0.23.3+ds-2) Binary: python3-pysam python3-pysam-dbgsym Binary-Only: yes Architecture: loong64 Version: 0.23.3+ds-2+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: loong64 Build Daemon (loongson-tecnico-01) Description: python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Changes: python-pysam (0.23.3+ds-2+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild on buildd Checksums-Sha1: 73270cc845cca759ef0fc910002bb9517c5458a2 8902 python-pysam_0.23.3+ds-2+b1_loong64.buildinfo 8f1ea936abcd1ef163d44b3dd3c841365dce44f7 20629444 python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb 8985342aa21d73e944a3ed0e67cf38f0b31ffcb5 4231728 python3-pysam_0.23.3+ds-2+b1_loong64.deb Checksums-Sha256: bee32dde740715286518d5dcb441d16d5065c12894d2724f4458b53d92bab17a 8902 python-pysam_0.23.3+ds-2+b1_loong64.buildinfo 02832a49d04455bce076c5b9200d30989dd5e3846da6ea4b35bbe11bdaa361d6 20629444 python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb 697dcf9751b016dbc695c77c6bcba48612abff58528e3000a4227915b151843c 4231728 python3-pysam_0.23.3+ds-2+b1_loong64.deb Files: 26931c36f4fb45a8a0e37a506d26329c 8902 python optional python-pysam_0.23.3+ds-2+b1_loong64.buildinfo f0f9d0ae937c2e533afe9b64ca90136f 20629444 debug optional python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb a17f9df813377aa49e0ce0ec52bb43b9 4231728 python optional python3-pysam_0.23.3+ds-2+b1_loong64.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 10 Jun 2026 22:45:08 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-pysam (0.23.3+ds-2) Binary: python3-pysam python3-pysam-dbgsym Architecture: loong64 Version: 0.23.3+ds-2+b1 Binary-Only-Changes: python-pysam (0.23.3+ds-2+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild on buildd . -- loong64 Build Daemon (loongson-tecnico-01) Wed, 22 Apr 2026 12:39:42 +0000 Checksums-Md5: f0f9d0ae937c2e533afe9b64ca90136f 20629444 python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb a17f9df813377aa49e0ce0ec52bb43b9 4231728 python3-pysam_0.23.3+ds-2+b1_loong64.deb Checksums-Sha1: 8f1ea936abcd1ef163d44b3dd3c841365dce44f7 20629444 python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb 8985342aa21d73e944a3ed0e67cf38f0b31ffcb5 4231728 python3-pysam_0.23.3+ds-2+b1_loong64.deb Checksums-Sha256: 02832a49d04455bce076c5b9200d30989dd5e3846da6ea4b35bbe11bdaa361d6 20629444 python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb 697dcf9751b016dbc695c77c6bcba48612abff58528e3000a4227915b151843c 4231728 python3-pysam_0.23.3+ds-2+b1_loong64.deb Build-Origin: Debian Build-Architecture: loong64 Build-Date: Wed, 10 Jun 2026 22:45:06 +0000 Build-Path: /build/reproducible-path/python-pysam-0.23.3+ds Installed-Build-Depends: autoconf (= 2.72-6), automake (= 1:1.18.1-4), autopoint (= 0.23.2-2), autotools-dev (= 20240727.1+nmu1), base-files (= 14+b1), base-passwd (= 3.6.8+b1), bash (= 5.3-2), bcftools (= 1.22-1), binutils (= 2.46-3), binutils-common (= 2.46-3), binutils-loongarch64-linux-gnu (= 2.46-3), bsdextrautils (= 2.42-4), build-essential (= 12.12+b1), bzip2 (= 1.0.8-6+b1), comerr-dev (= 2.1-1.47.4-1), coreutils (= 9.10-1), cpp (= 4:15.2.0-5), cpp-15 (= 15.2.0-16), cpp-15-loongarch64-linux-gnu (= 15.2.0-16), cpp-loongarch64-linux-gnu (= 4:15.2.0-5), cython3 (= 3.1.6+dfsg-2+b1), dash (= 0.5.12-12+b1), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2+b1), dh-autoreconf (= 22), dh-python (= 7.20260309), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.46-5+b1), findutils (= 4.10.0-3+b1), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-16), g++-15-loongarch64-linux-gnu (= 15.2.0-16), g++-loongarch64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-15 (= 15.2.0-16), gcc-15-base (= 15.2.0-16), gcc-15-loongarch64-linux-gnu (= 15.2.0-16), gcc-16-base (= 16-20260322-1), gcc-loongarch64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-2), gettext-base (= 0.23.2-2), grep (= 3.12-1+b1), groff-base (= 1.23.0-10+b1), gzip (= 1.13-1+b1), hostname (= 3.25+b1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-2+b1), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16-20260322-1), libatomic1 (= 16-20260322-1), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-3), libblkid1 (= 2.42-4), libbrotli-dev (= 1.2.0-3), libbrotli1 (= 1.2.0-3), libbz2-1.0 (= 1.0.8-6+b1), libbz2-dev (= 1.0.8-6+b1), libc-bin (= 2.42-15), libc-dev-bin (= 2.42-15), libc-gconv-modules-extra (= 2.42-15), libc6 (= 2.42-15), libc6-dev (= 2.42-15), libcap-ng0 (= 0.9.3-1), libcc1-0 (= 16-20260322-1), libcom-err2 (= 1.47.4-1), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46-3), libctf0 (= 2.46-3), libcurl3t64-gnutls (= 8.20.0~rc2-1), libcurl4-gnutls-dev (= 8.20.0~rc2-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.31), libdeflate-dev (= 1.23-2+b1), libdeflate0 (= 1.23-2+b1), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.194-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b2), libexpat1 (= 2.7.5-1), libexpat1-dev (= 2.7.5-1), libffi8 (= 3.5.2-4), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-16), libgcc-s1 (= 16-20260322-1), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgmp-dev (= 2:6.3.0+dfsg-5+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b1), libgnutls-dane0t64 (= 3.8.12-3), libgnutls28-dev (= 3.8.12-3), libgnutls30t64 (= 3.8.12-3), libgomp1 (= 16-20260322-1), libgssapi-krb5-2 (= 1.22.1-2+b1), libgssrpc4t64 (= 1.22.1-2+b1), libhogweed6t64 (= 3.10.2-1+b1), libhts-dev (= 1.22.1+ds2-1+b1), libhts3t64 (= 1.22.1+ds2-1+b1), libhtscodecs2 (= 1.6.6-1), libidn2-0 (= 2.3.8-4+b1), libidn2-dev (= 2.3.8-4+b1), libisl23 (= 0.27-2), libitm1 (= 16-20260322-1), libjansson4 (= 2.14-2+b4), libjs-sphinxdoc (= 8.2.3-12), libk5crypto3 (= 1.22.1-2+b1), libkadm5clnt-mit12 (= 1.22.1-2+b1), libkadm5srv-mit12 (= 1.22.1-2+b1), libkdb5-10t64 (= 1.22.1-2+b1), libkeyutils1 (= 1.6.3-6+b1), libkrb5-3 (= 1.22.1-2+b1), libkrb5-dev (= 1.22.1-2+b1), libkrb5support0 (= 1.22.1-2+b1), libldap-dev (= 2.6.10+dfsg-1+b1), libldap2 (= 2.6.10+dfsg-1+b1), liblsan0 (= 16-20260322-1), liblzma-dev (= 5.8.3-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.42-4), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncurses6 (= 6.6+20251231-1), libncursesw6 (= 6.6+20251231-1), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.68.1-1), libnghttp2-dev (= 1.68.1-1), libnghttp3-9 (= 1.15.0-1), libnghttp3-dev (= 1.15.0-1), libngtcp2-16 (= 1.22.1-1), libngtcp2-crypto-gnutls-dev (= 1.22.1-1), libngtcp2-crypto-gnutls8 (= 1.22.1-1), libngtcp2-dev (= 1.22.1-1), libp11-kit-dev (= 0.26.2-2), libp11-kit0 (= 0.26.2-2), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.40 (= 5.40.1-7+b1), libpipeline1 (= 1.5.8-2+b1), libpkgconf7 (= 2.5.1-4), libpsl-dev (= 0.21.5-1), libpsl5t64 (= 0.21.5-1), libpython3-all-dev (= 3.13.9-3), libpython3-dev (= 3.13.9-3), libpython3-stdlib (= 3.13.9-3), libpython3.13 (= 3.13.12-1), libpython3.13-dev (= 3.13.12-1), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libpython3.14 (= 3.14.4-1), libpython3.14-dev (= 3.14.4-1), libpython3.14-minimal (= 3.14.4-1), libpython3.14-stdlib (= 3.14.4-1), libreadline8t64 (= 8.3-4), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libselinux1 (= 3.10-1), libsframe3 (= 2.46-3), libsmartcols1 (= 2.42-4), libsqlite3-0 (= 3.46.1-9+b1), libssh2-1-dev (= 1.11.1-2), libssh2-1t64 (= 1.11.1-2), libssl-dev (= 3.6.2-1), libssl3t64 (= 3.6.2-1), libstdc++-15-dev (= 15.2.0-16), libstdc++6 (= 16-20260322-1), libsystemd0 (= 260.1-1), libtasn1-6 (= 4.21.0-2), libtasn1-6-dev (= 4.21.0-2), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-11), libtsan2 (= 16-20260322-1), libubsan1 (= 16-20260322-1), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 260.1-1), libunbound8 (= 1.24.2-1+b1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42-4), libxml2-16 (= 2.15.2+dfsg-0.1), libzstd-dev (= 1.5.7+dfsg-3+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.19.13-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), netbase (= 6.5), nettle-dev (= 3.10.2-1+b1), openssl-provider-legacy (= 3.6.2-1), patch (= 2.8-2+b1), perl (= 5.40.1-7+b1), perl-base (= 5.40.1-7+b1), perl-modules-5.40 (= 5.40.1-7), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), python3 (= 3.13.9-3), python3-all (= 3.13.9-3), python3-all-dev (= 3.13.9-3), python3-autocommand (= 2.2.2-4), python3-dev (= 3.13.9-3), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-2), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.9-3), python3-more-itertools (= 10.8.0-1), python3-packaging (= 26.0-1), python3-pkg-resources (= 78.1.1-0.1), python3-pluggy (= 1.6.0-2), python3-pygments (= 2.19.2+dfsg-1), python3-pytest (= 9.0.3-1), python3-setuptools (= 78.1.1-0.1), python3-typeguard (= 4.4.4-2), python3-typing-extensions (= 4.15.0-2), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.12-1), python3.13-dev (= 3.13.12-1), python3.13-minimal (= 3.13.12-1), python3.14 (= 3.14.4-1), python3.14-dev (= 3.14.4-1), python3.14-minimal (= 3.14.4-1), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.3-1+b1), samtools (= 1.22.1-1), sed (= 4.9-2+b1), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tabix (= 1.22.1+ds2-1+b1), tar (= 1.35+dfsg-4), tzdata (= 2026a-3), util-linux (= 2.42-4), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1776861582" +------------------------------------------------------------------------------+ | Package contents Wed, 10 Jun 2026 22:45:09 +0000 | +------------------------------------------------------------------------------+ python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb ----------------------------------------------- new Debian package, version 2.0. size 20629444 bytes: control archive=1808 bytes. 1450 bytes, 12 lines control 2851 bytes, 27 lines md5sums Package: python3-pysam-dbgsym Source: python-pysam (0.23.3+ds-2) Version: 0.23.3+ds-2+b1 Auto-Built-Package: debug-symbols Architecture: loong64 Maintainer: Debian Med Packaging Team Installed-Size: 21671 Depends: python3-pysam (= 0.23.3+ds-2+b1) Section: debug Priority: optional Description: debug symbols for python3-pysam Build-Ids: 0548626051cc9f2999a1af020a72213254e081e1 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./usr/lib/debug/.build-id/e0/8d33db77efe552dc25ec7b802be1cfd8aa7654.debug drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/debug/.build-id/ee/ -rw-r--r-- root/root 284824 2026-04-22 12:39 ./usr/lib/debug/.build-id/ee/627da22c6567ba18a9597466c032c51651d5c2.debug drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/debug/.dwz/loongarch64-linux-gnu/ -rw-r--r-- root/root 262072 2026-04-22 12:39 ./usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-pysam.debug drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/share/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-04-22 12:39 ./usr/share/doc/python3-pysam-dbgsym -> python3-pysam python3-pysam_0.23.3+ds-2+b1_loong64.deb ---------------------------------------- new Debian package, version 2.0. size 4231728 bytes: control archive=9644 bytes. 718 bytes, 16 lines control 37184 bytes, 376 lines md5sums 285 bytes, 12 lines * postinst #!/bin/sh 423 bytes, 12 lines * prerm #!/bin/sh Package: python3-pysam Source: python-pysam (0.23.3+ds-2) Version: 0.23.3+ds-2+b1 Architecture: loong64 Maintainer: Debian Med Packaging Team Installed-Size: 43479 Depends: libc6 (>= 2.42), libhts3t64 (>= 1.22.1), zlib1g (>= 1:1.1.4), python3 (<< 3.15), python3 (>= 3.13~), python3:any Section: python Priority: optional Homepage: https://pysam.readthedocs.org/en/latest Description: interface for the SAM/BAM sequence alignment and mapping format (Python 3) Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. . This package installs the module for Python 3. drwxr-xr-x root/root 0 2026-04-22 12:39 ./ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/python3.14/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/python3.14/dist-packages/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/python3.14/dist-packages/pysam/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/python3.14/dist-packages/pysam/include/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/python3.14/dist-packages/pysam/include/samtools/ -rw-r--r-- root/root 1441 2026-04-22 12:39 ./usr/lib/python3.14/dist-packages/pysam/include/samtools/samtools_config_vars.h drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/python3/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2026-04-22 12:39 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/ -rw-r--r-- root/root 1668 2026-04-22 12:39 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+------------------------------------------------------------------------------+ | Post Build Wed, 10 Jun 2026 22:45:11 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 10 Jun 2026 22:45:11 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 10 Jun 2026 22:45:15 +0000 | +------------------------------------------------------------------------------+ Build Architecture: loong64 Build Type: any Build-Space: 899672 Build-Time: 1051 Distribution: unstable Host Architecture: loong64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdXLFlt2/inputs/python-pysam_0.23.3+ds-2.dsc Machine Architecture: loong64 Package: python-pysam Package-Time: 1073 Source-Version: 0.23.3+ds-2 Space: 899672 Status: successful Version: 0.23.3+ds-2+b1 -------------------------------------------------------------------------------- Finished at 2026-06-10T22:45:06Z Build needed 00:17:53, 899672k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdXLFlt2/out checking python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb: size differs for python3-pysam-dbgsym_0.23.3+ds-2+b1_loong64.deb