=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdSnjyLY/inputs/macs_3.0.4-1_loong64.buildinfo Source: macs Version: 3.0.4-1 rebuilderd-worker node: loong64-01 +------------------------------------------------------------------------------+ | Downloading sources Fri, 12 Jun 2026 18:32:01 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [189 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [176 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [86.0 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,220 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [263 kB] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [8,528 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.9 MB] Get:19 https://deb.debian.org/debian sid/main Sources [11.5 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.8 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [399 kB] Fetched 34.7 MB in 16s (2,180 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4-1.dsc' macs_3.0.4-1.dsc 2171 SHA256:2a8f7b74f2c3f8828e7e77be35cf41b449fa5ea530893c750b2c8b89ca774a20 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4.orig.tar.gz' macs_3.0.4.orig.tar.gz 200470087 SHA256:e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4-1.debian.tar.xz' macs_3.0.4-1.debian.tar.xz 1268072 SHA256:3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 macs_3.0.4.orig.tar.gz 3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f macs_3.0.4-1.debian.tar.xz 2a8f7b74f2c3f8828e7e77be35cf41b449fa5ea530893c750b2c8b89ca774a20 macs_3.0.4-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 12 Jun 2026 18:33:04 +0000 | +------------------------------------------------------------------------------+ Rebuilding macs=3.0.4-1 in /srv/rebuilderd/tmp/rebuilderdSnjyLY/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdSnjyLY/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdSnjyLY/inputs/macs_3.0.4-1_loong64.buildinfo /srv/rebuilderd/tmp/rebuilderdSnjyLY/inputs/macs_3.0.4-1_loong64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/macs-3.0.4 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [189 kB] Get:2 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable InRelease [189 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 Packages [10.0 MB] Get:4 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 Packages [9950 kB] Fetched 20.4 MB in 6s (3377 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260514T142722Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pluggy all 1.6.0-2 [27.2 kB] Fetched 27.2 kB in 0s (211 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpai1yrwvk/python3-pluggy_1.6.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 g++ loong64 4:15.2.0-5+b1 [1340 B] Fetched 1340 B in 0s (11.3 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpypp8y3n_/g++_15.2.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 mawk loong64 1.3.4.20260302-1 [141 kB] Fetched 141 kB in 0s (1186 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8elitfnh/mawk_1.3.4.20260302-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 zlib1g-dev loong64 1:1.3.dfsg+really1.3.2-3 [986 kB] Fetched 986 kB in 0s (2799 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpbgqie1o_/zlib1g-dev_1.3.dfsg+really1.3.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libacl1 loong64 2.3.2-3 [33.6 kB] Fetched 33.6 kB in 0s (182 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp84n0j85w/libacl1_2.3.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gzip loong64 1.13-1+b1 [137 kB] Fetched 137 kB in 0s (4333 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpctyo_w7_/gzip_1.13-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (2919 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuur4gydo/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libstdc++6 loong64 16.1.0-1 [763 kB] Fetched 763 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtsdjl9y/libstdc++6_16.1.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libblas3 loong64 3.12.1-7+b2 [115 kB] Fetched 115 kB in 0s (3547 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp20o7_kdx/libblas3_3.12.1-7+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (1302 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprmrutj04/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 make loong64 4.4.1-3+b1 [462 kB] Fetched 462 kB in 0s (2742 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp2hqew5v/make_4.4.1-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dash loong64 0.5.12-12+b1 [101 kB] Fetched 101 kB in 0s (668 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0rqqkfy/dash_0.5.12-12+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgcc-s1 loong64 16.1.0-1 [107 kB] Fetched 107 kB in 0s (958 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmport5o7_j/libgcc-s1_16.1.0-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-joblib all 1.5.2-1 [222 kB] Fetched 222 kB in 0s (3235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wpgpyyc/python3-joblib_1.5.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pygments all 2.19.2+dfsg-1 [847 kB] Fetched 847 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4_42lzty/python3-pygments_2.19.2+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Fetched 500 kB in 0s (2937 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbcnpqslw/libsimde-dev_0.8.4~rc3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 pybuild-plugin-pyproject all 7.20260309 [6752 B] Fetched 6752 B in 0s (85.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq2bkrahp/pybuild-plugin-pyproject_7.20260309_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-numpy-dev loong64 1:2.4.4+ds-2 [179 kB] Fetched 179 kB in 0s (6613 kB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.4+ds-2_loong64.deb' to '/srv/rebuilderd/tmp/tmpy8130vi6/python3-numpy-dev_2.4.4+ds-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 binutils-common loong64 2.46-3 [2632 kB] Fetched 2632 kB in 0s (6326 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsuer9cif/binutils-common_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 ncurses-bin loong64 6.6+20251231-1+b1 [439 kB] Fetched 439 kB in 0s (4648 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjye_0lk7/ncurses-bin_6.6+20251231-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (27.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqynlj4h/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (1512 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_u4h1ymw/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3-all-dev loong64 3.13.9-3+b1 [1080 B] Fetched 1080 B in 0s (3992 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpide2rsmz/libpython3-all-dev_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmpfr6 loong64 4.2.2-3 [664 kB] Fetched 664 kB in 0s (6781 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl6jil2ez/libmpfr6_4.2.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 0s (3243 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2epnj2dx/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (1987 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkgge1kvv/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libstdc++-15-dev loong64 15.2.0-17 [6750 kB] Fetched 6750 kB in 0s (41.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsc4_5gsn/libstdc++-15-dev_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpipeline1 loong64 1.5.8-3 [48.6 kB] Fetched 48.6 kB in 0s (317 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpybpcmagf/libpipeline1_1.5.8-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 ca-certificates all 20260223 [158 kB] Fetched 158 kB in 0s (5957 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnvnrfczu/ca-certificates_20260223_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libaudit1 loong64 1:4.1.2-1+b1 [61.2 kB] Fetched 61.2 kB in 0s (4183 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmp8tqe2joj/libaudit1_4.1.2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libubsan1 loong64 16.1.0-1 [1118 kB] Fetched 1118 kB in 0s (22.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvbzdwico/libubsan1_16.1.0-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-pip all 26.0.1+dfsg-1 [1390 kB] Fetched 1390 kB in 0s (22.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcesfebse/python3-pip_26.0.1+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-typeguard all 4.4.4-2 [37.2 kB] Fetched 37.2 kB in 0s (3511 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd04922qh/python3-typeguard_4.4.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 binutils-loongarch64-linux-gnu loong64 2.46-3 [817 kB] Fetched 817 kB in 0s (8069 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp552a4tfv/binutils-loongarch64-linux-gnu_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgdbm-compat4t64 loong64 1.26-1+b2 [52.1 kB] Fetched 52.1 kB in 0s (1751 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13ut367h/libgdbm-compat4t64_1.26-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-iniconfig all 2.1.0-2 [7540 B] Fetched 7540 B in 0s (215 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1hmqaai_/python3-iniconfig_2.1.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gcc loong64 4:15.2.0-5+b1 [5160 B] Fetched 5160 B in 0s (421 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpzkwchcjg/gcc_15.2.0-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libblkid1 loong64 2.42-6 [180 kB] Fetched 180 kB in 0s (15.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmkzxj4u1/libblkid1_2.42-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3.14 loong64 3.14.5-1 [842 kB] Fetched 842 kB in 0s (8218 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz4j9nj32/python3.14_3.14.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (6198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptm9okh6i/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 procps loong64 2:4.0.4-9+b2 [876 kB] Fetched 876 kB in 0s (13.2 MB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpa136m9zg/procps_4.0.4-9+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgomp1 loong64 16.1.0-1 [138 kB] Fetched 138 kB in 0s (2318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu8s1_i3f/libgomp1_16.1.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libitm1 loong64 16.1.0-1 [24.9 kB] Fetched 24.9 kB in 0s (582 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxnpcxsy/libitm1_16.1.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gcc-16-base loong64 16.1.0-1 [36.3 kB] Fetched 36.3 kB in 0s (290 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6eoj442f/gcc-16-base_16.1.0-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libpython3.14 loong64 3.14.5-1 [2318 kB] Fetched 2318 kB in 0s (27.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxl8_3_9/libpython3.14_3.14.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gcc-15 loong64 15.2.0-17 [531 kB] Fetched 531 kB in 0s (37.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkacv849u/gcc-15_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 coreutils loong64 9.10-1 [3128 kB] Fetched 3128 kB in 0s (85.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbg8dqglj/coreutils_9.10-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libmount1 loong64 2.42-6 [221 kB] Fetched 221 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ga7jji2/libmount1_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam-modules-bin loong64 1.7.0-5+b2 [45.7 kB] Fetched 45.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp662j4u46/libpam-modules-bin_1.7.0-5+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libxml2-16 loong64 2.15.2+dfsg-0.1 [647 kB] Fetched 647 kB in 0s (43.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpepbiccbz/libxml2-16_2.15.2+dfsg-0.1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 hostname loong64 3.25+b1 [11.2 kB] Fetched 11.2 kB in 0s (542 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplk0zpu6u/hostname_3.25+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libselinux1 loong64 3.10-1 [85.3 kB] Fetched 85.3 kB in 0s (5654 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1mfqdkz0/libselinux1_3.10-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsqlite3-0 loong64 3.46.1-9+b1 [906 kB] Fetched 906 kB in 0s (52.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvokl19he/libsqlite3-0_3.46.1-9+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 groff-base loong64 1.24.1-1 [1314 kB] Fetched 1314 kB in 3s (487 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdf599sov/groff-base_1.24.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3.14-dev loong64 3.14.5-1 [509 kB] Fetched 509 kB in 0s (1456 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3uyq1lfp/python3.14-dev_3.14.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdpkg-perl all 1.23.7 [669 kB] Fetched 669 kB in 1s (559 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_3czata/libdpkg-perl_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libattr1 loong64 1:2.5.2-4 [23.1 kB] Fetched 23.1 kB in 0s (55.4 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpclb7k6vu/libattr1_2.5.2-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 base-files loong64 14.0 [72.6 kB] Fetched 72.6 kB in 0s (6962 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24s0az4m/base-files_14.0_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcap-ng0 loong64 0.9.3-1 [18.2 kB] Fetched 18.2 kB in 0s (105 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg5chl920/libcap-ng0_0.9.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 tzdata all 2026b-1 [260 kB] Fetched 260 kB in 0s (8089 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgsne1mag/tzdata_2026b-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 cpp-15 loong64 15.2.0-17 [1284 B] Fetched 1284 B in 1s (913 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpevn9bg74/cpp-15_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblzma5 loong64 5.8.3-1 [323 kB] Fetched 323 kB in 1s (450 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn_z2s49i/liblzma5_5.8.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 help2man loong64 1.49.3+b1 [197 kB] Fetched 197 kB in 1s (341 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_va27waw/help2man_1.49.3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 1s (19.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp04sppa7k/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 openssl-provider-legacy loong64 3.6.2-1 [314 kB] Fetched 314 kB in 0s (1895 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkul1n3ry/openssl-provider-legacy_3.6.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 1s (1150 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqnm60f12/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 gettext-base loong64 0.23.2-2 [242 kB] Fetched 242 kB in 0s (511 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnacsd26q/gettext-base_0.23.2-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (128 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnh59w74o/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (284 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuqbb455y/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam0g loong64 1.7.0-5+b2 [67.4 kB] Fetched 67.4 kB in 0s (527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwlwd7rqb/libpam0g_1.7.0-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libbz2-1.0 loong64 1.0.8-6+b2 [39.8 kB] Fetched 39.8 kB in 0s (2672 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp80bacnoe/libbz2-1.0_1.0.8-6+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 cpp-15-loongarch64-linux-gnu loong64 15.2.0-17 [10.2 MB] Fetched 10.2 MB in 2s (4958 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz82zyock/cpp-15-loongarch64-linux-gnu_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3-dev loong64 3.13.9-3+b1 [8584 B] Fetched 8584 B in 0s (23.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph72w4mkc/libpython3-dev_3.13.9-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 autoconf all 2.72-6 [494 kB] Fetched 494 kB in 0s (1493 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp81sw9eav/autoconf_2.72-6_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libuchardet0 loong64 0.0.8-2+b2 [69.9 kB] Fetched 69.9 kB in 1s (136 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw78as8we/libuchardet0_0.0.8-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe3cd491q/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libdebhelper-perl all 13.31 [75.7 kB] Fetched 75.7 kB in 0s (551 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxftef6m0/libdebhelper-perl_13.31_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libpython3.13-stdlib loong64 3.13.12-1 [1946 kB] Fetched 1946 kB in 0s (18.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57lct6rm/libpython3.13-stdlib_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libc6 loong64 2.42-16 [1286 kB] Fetched 1286 kB in 0s (7164 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgfghyry_/libc6_2.42-16_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-cykhash loong64 2.0.0-3+b1 [590 kB] Fetched 590 kB in 2s (272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr7ektmdb/python3-cykhash_2.0.0-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libuuid1 loong64 2.42-6 [32.6 kB] Fetched 32.6 kB in 1s (37.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpllwwvc5s/libuuid1_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpcre2-8-0 loong64 10.46-1+b2 [290 kB] Fetched 290 kB in 0s (717 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuv7otajd/libpcre2-8-0_10.46-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (23.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpng8j4ncb/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblapack3 loong64 3.12.1-7+b2 [1887 kB] Fetched 1887 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_psadjg_/liblapack3_3.12.1-7+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-sklearn-lib loong64 1.8.0+dfsg-4 [3722 kB] Fetched 3722 kB in 1s (4084 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgxngd__9/python3-sklearn-lib_1.8.0+dfsg-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 binutils loong64 2.46-3 [70.0 kB] Fetched 70.0 kB in 0s (425 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2f0egv0a/binutils_2.46-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 liblocale-gettext-perl loong64 1.07-9 [14.8 kB] Fetched 14.8 kB in 0s (251 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbjncu9m/liblocale-gettext-perl_1.07-9_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (4410 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmpdr73av/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 debhelper all 13.31 [932 kB] Fetched 932 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprm7o3269/debhelper_13.31_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libsystemd0 loong64 260.1-1 [443 kB] Fetched 443 kB in 0s (8822 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6d3bt3_q/libsystemd0_260.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3.13-dev loong64 3.13.12-1 [505 kB] Fetched 505 kB in 0s (35.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl3y8x5mc/python3.13-dev_3.13.12-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libudev1 loong64 260.1-1 [131 kB] Fetched 131 kB in 0s (366 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpems1xler/libudev1_260.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphd8jsalh/dh-autoreconf_22_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gcc-15-loongarch64-linux-gnu loong64 15.2.0-17 [19.3 MB] Fetched 19.3 MB in 0s (64.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8a2q4ey1/gcc-15-loongarch64-linux-gnu_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtool all 2.5.4-11 [539 kB] Fetched 539 kB in 1s (735 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpea6cadk4/libtool_2.5.4-11_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-all loong64 3.13.9-3+b1 [1060 B] Fetched 1060 B in 0s (18.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnif63wh_/python3-all_3.13.9-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libmagic1t64 loong64 1:5.46-5+b2 [111 kB] Fetched 111 kB in 0s (2125 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpbq9mlvh9/libmagic1t64_5.46-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 grep loong64 3.12-1+b1 [445 kB] Fetched 445 kB in 0s (1671 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfgig2i1o/grep_3.12-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Fetched 11.7 kB in 0s (46.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplnq4ylcl/python3-pyproject-hooks_1.2.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 autopoint all 0.23.2-2 [770 kB] Fetched 770 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxd53caq/autopoint_0.23.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 openssl loong64 3.6.2-1 [1496 kB] Fetched 1496 kB in 0s (7518 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtqzjfqo/openssl_3.6.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 zlib1g loong64 1:1.3.dfsg+really1.3.2-3 [87.8 kB] Fetched 87.8 kB in 1s (153 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_loong64.deb' to '/srv/rebuilderd/tmp/tmp5390dg7_/zlib1g_1.3.dfsg+really1.3.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dpkg-dev all 1.23.7 [1318 kB] Fetched 1318 kB in 1s (1780 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpff4v2vuq/dpkg-dev_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdb5.3t64 loong64 5.3.28+dfsg2-11+b1 [711 kB] Fetched 711 kB in 1s (1307 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95e11gbi/libdb5.3t64_5.3.28+dfsg2-11+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libpython3.14-minimal loong64 3.14.5-1 [894 kB] Fetched 894 kB in 1s (1171 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjioq8mxr/libpython3.14-minimal_3.14.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 1s (26.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmsb_ul8d/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libffi8 loong64 3.5.2-4 [22.4 kB] Fetched 22.4 kB in 1s (34.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpha_wrqve/libffi8_3.5.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-minimal loong64 3.13.9-3+b1 [25.4 kB] Fetched 25.4 kB in 1s (27.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppoconf5w/python3-minimal_3.13.9-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 perl loong64 5.40.1-7+b1 [268 kB] Fetched 268 kB in 0s (638 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp03r7172a/perl_5.40.1-7+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libctf0 loong64 2.46-3 [98.3 kB] Fetched 98.3 kB in 0s (384 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5g36ld7s/libctf0_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgfortran5 loong64 16.1.0-1 [423 kB] Fetched 423 kB in 0s (27.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi_za2xrp/libgfortran5_16.1.0-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libsmartcols1 loong64 2.42-6 [150 kB] Fetched 150 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7tggwc0/libsmartcols1_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xz-utils loong64 5.8.3-1 [740 kB] Fetched 740 kB in 0s (46.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp54mit0_7/xz-utils_5.8.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libasan8 loong64 16.1.0-1 [2841 kB] Fetched 2841 kB in 0s (73.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxwgqyf_k/libasan8_16.1.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 build-essential loong64 12.12+b1 [4900 B] Fetched 4900 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9tl138l9/build-essential_12.12+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 debianutils loong64 5.23.2+b1 [92.8 kB] Fetched 92.8 kB in 0s (6704 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6wv7rr41/debianutils_5.23.2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libperl5.40 loong64 5.40.1-7+b1 [4310 kB] Fetched 4310 kB in 0s (86.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph47jv3tz/libperl5.40_5.40.1-7+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libatomic1 loong64 16.1.0-1 [9328 B] Fetched 9328 B in 0s (928 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxcon3e2/libatomic1_16.1.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 tar loong64 1.35+dfsg-4 [820 kB] Fetched 820 kB in 0s (49.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0_2jl12/tar_1.35+dfsg-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libdebconfclient0 loong64 0.282+b3 [7800 B] Fetched 7800 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi40ckqdp/libdebconfclient0_0.282+b3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libmd0 loong64 1.2.0-1 [39.5 kB] Fetched 39.5 kB in 0s (2659 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ak6ocys/libmd0_1.2.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libzstd1 loong64 1.5.7+dfsg-3+b2 [287 kB] Fetched 287 kB in 0s (23.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp67caa2uo/libzstd1_1.5.7+dfsg-3+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam-modules loong64 1.7.0-5+b2 [176 kB] Fetched 176 kB in 0s (15.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr8kubvik/libpam-modules_1.7.0-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcrypt1 loong64 1:4.5.1-1+b1 [97.5 kB] Fetched 97.5 kB in 0s (9199 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmprp73lcma/libcrypt1_4.5.1-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 cpp loong64 4:15.2.0-5+b1 [1580 B] Fetched 1580 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmp74iru93m/cpp_15.2.0-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libbinutils loong64 2.46-3 [497 kB] Fetched 497 kB in 0s (32.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn6x2l990/libbinutils_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtinfo6 loong64 6.6+20251231-1+b1 [350 kB] Fetched 350 kB in 0s (25.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiu525lp_/libtinfo6_6.6+20251231-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libc-gconv-modules-extra loong64 2.42-16 [1159 kB] Fetched 1159 kB in 0s (59.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9s95e36a/libc-gconv-modules-extra_2.42-16_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dpkg loong64 1.23.7 [1527 kB] Fetched 1527 kB in 0s (68.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps6fy0hp9/dpkg_1.23.7_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 cpp-loongarch64-linux-gnu loong64 4:15.2.0-5+b1 [4652 B] Fetched 4652 B in 0s (344 kB/s) dpkg-name: info: moved 'cpp-loongarch64-linux-gnu_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpbc79zur9/cpp-loongarch64-linux-gnu_15.2.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 bzip2 loong64 1.0.8-6+b2 [40.3 kB] Fetched 40.3 kB in 0s (2832 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplj3950y3/bzip2_1.0.8-6+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 g++-15-loongarch64-linux-gnu loong64 15.2.0-17 [11.3 MB] Fetched 11.3 MB in 0s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2s7kg55w/g++-15-loongarch64-linux-gnu_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-autocommand all 2.2.2-4 [13.7 kB] Fetched 13.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0sw5jyja/python3-autocommand_2.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sysvinit-utils loong64 3.18-1 [29.9 kB] Fetched 29.9 kB in 0s (2863 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpybvuxdqj/sysvinit-utils_3.18-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gcc-15-base loong64 15.2.0-17 [36.8 kB] Fetched 36.8 kB in 0s (2402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkh3q1cw6/gcc-15-base_15.2.0-17_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 rpcsvc-proto loong64 1.4.3-1+b1 [61.0 kB] Fetched 61.0 kB in 0s (3874 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpum4usitk/rpcsvc-proto_1.4.3-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (1187 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmvrcrn2u/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (85.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq6tcqiun/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-packaging all 26.0-1 [64.3 kB] Fetched 64.3 kB in 0s (6028 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzlh799it/python3-packaging_26.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcc1-0 loong64 16.1.0-1 [41.9 kB] Fetched 41.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpynmbb0tb/libcc1-0_16.1.0-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-build all 1.4.0-1 [38.8 kB] Fetched 38.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqzihcj89/python3-build_1.4.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libmagic-mgc loong64 1:5.46-5+b2 [337 kB] Fetched 337 kB in 0s (27.0 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpuyj733jg/libmagic-mgc_5.46-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3-stdlib loong64 3.13.9-3+b1 [8348 B] Fetched 8348 B in 0s (829 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpee4ng22i/libpython3-stdlib_3.13.9-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 gettext loong64 0.23.2-2 [1676 kB] Fetched 1676 kB in 0s (70.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xm6jp3k/gettext_0.23.2-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libctf-nobfd0 loong64 2.46-3 [166 kB] Fetched 166 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87beixmm/libctf-nobfd0_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 base-passwd loong64 3.6.8+b1 [54.7 kB] Fetched 54.7 kB in 0s (3044 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp15e7iw9y/base-passwd_3.6.8+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3.14-minimal loong64 3.14.5-1 [2323 kB] Fetched 2323 kB in 0s (77.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsmy35fs0/python3.14-minimal_3.14.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (52.0 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmpgb5uds9z/automake_1.18.1-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 findutils loong64 4.10.0-4 [704 kB] Fetched 704 kB in 0s (35.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpolhb32ko/findutils_4.10.0-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 man-db loong64 2.13.1-1+b1 [1460 kB] Fetched 1460 kB in 0s (58.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplv0ivzcl/man-db_2.13.1-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 g++-loongarch64-linux-gnu loong64 4:15.2.0-5+b1 [1208 B] Fetched 1208 B in 0s (82.4 kB/s) dpkg-name: info: moved 'g++-loongarch64-linux-gnu_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmp119hac06/g++-loongarch64-linux-gnu_15.2.0-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 util-linux loong64 2.42-6 [1200 kB] Fetched 1200 kB in 0s (60.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa104xs_f/util-linux_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp559pjjqk/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gcc-loongarch64-linux-gnu loong64 4:15.2.0-5+b1 [1452 B] Fetched 1452 B in 0s (0 B/s) dpkg-name: info: moved 'gcc-loongarch64-linux-gnu_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpngifg3r4/gcc-loongarch64-linux-gnu_15.2.0-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 file loong64 1:5.46-5+b2 [42.8 kB] Fetched 42.8 kB in 0s (4025 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpnpzhhyqj/file_5.46-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libncursesw6 loong64 6.6+20251231-1+b1 [137 kB] Fetched 137 kB in 0s (8700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0rr7kj3u/libncursesw6_6.6+20251231-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgmp10 loong64 2:6.3.0+dfsg-5+b2 [567 kB] Fetched 567 kB in 0s (38.4 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpgg6rk2x5/libgmp10_6.3.0+dfsg-5+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-scipy loong64 1.16.3-4+b1 [17.6 MB] Fetched 17.6 MB in 0s (108 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpckfdb92v/python3-scipy_1.16.3-4+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libexpat1 loong64 2.8.0-2 [114 kB] Fetched 114 kB in 0s (9662 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp9e33g96/libexpat1_2.8.0-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 bc loong64 1.07.1-4+b1 [104 kB] Fetched 104 kB in 0s (1294 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnt6dsrp2/bc_1.07.1-4+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3 loong64 3.13.9-3+b1 [25.4 kB] Fetched 25.4 kB in 0s (1659 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbioh28ol/python3_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqhull-r8.0 loong64 2020.2-9 [241 kB] Fetched 241 kB in 0s (7153 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd4zsem_e/libqhull-r8.0_2020.2-9_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (9848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp774g36av/debconf_1.5.92_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libpython3.13-dev loong64 3.13.12-1 [16.5 MB] Fetched 16.5 MB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp76aet24t/libpython3.13-dev_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libisl23 loong64 0.27-2 [667 kB] Fetched 667 kB in 0s (42.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqrkcyjdp/libisl23_0.27-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 g++-15 loong64 15.2.0-17 [28.0 kB] Fetched 28.0 kB in 0s (2517 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ypf8cu0/g++-15_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 m4 loong64 1.4.21-1 [332 kB] Fetched 332 kB in 0s (18.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpub5bbih_/m4_1.4.21-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-numpy loong64 1:2.4.4+ds-2 [4446 kB] Fetched 4446 kB in 0s (9762 kB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.4.4+ds-2_loong64.deb' to '/srv/rebuilderd/tmp/tmpvgrjlddl/python3-numpy_2.4.4+ds-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (901 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptutknf4a/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgcc-15-dev loong64 15.2.0-17 [5378 kB] Fetched 5378 kB in 0s (47.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_7ng_q2s/libgcc-15-dev_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtsan2 loong64 16.1.0-1 [2505 kB] Fetched 2505 kB in 2s (1363 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd8v84wj6/libtsan2_16.1.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 2s (16.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp982kf9i8/python3-decorator_5.2.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libpython3.14-stdlib loong64 3.14.5-1 [2278 kB] Fetched 2278 kB in 1s (4148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfususwyp/libpython3.14-stdlib_3.14.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-dev loong64 3.13.9-3+b1 [29.8 kB] Fetched 29.8 kB in 1s (34.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbkk91lf0/python3-dev_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-hmmlearn loong64 0.3.3-1 [144 kB] Fetched 144 kB in 0s (356 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoumgkpru/python3-hmmlearn_0.3.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 diffutils loong64 1:3.12-1+b1 [405 kB] Fetched 405 kB in 1s (498 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpjokvc45t/diffutils_3.12-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libjs-sphinxdoc all 9.1.0-3 [25.3 kB] Fetched 25.3 kB in 0s (60.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk2phv151/libjs-sphinxdoc_9.1.0-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-wheel all 0.47.0-1 [26.9 kB] Fetched 26.9 kB in 0s (98.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvazh8r67/python3-wheel_0.47.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Fetched 60.0 kB in 0s (211 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppn61gok1/autotools-dev_20240727.1+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.context all 6.0.1-2 [8184 B] Fetched 8184 B in 0s (323 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeqeor87o/python3-jaraco.context_6.0.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libexpat1-dev loong64 2.8.0-2 [342 kB] Fetched 342 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq_hkmfm7/libexpat1-dev_2.8.0-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libpython3.13-minimal loong64 3.13.12-1 [868 kB] Fetched 868 kB in 0s (5987 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfzncfm1l/libpython3.13-minimal_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sed loong64 4.9-3 [330 kB] Fetched 330 kB in 0s (1068 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqfxthzct/sed_4.9-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libpython3.13 loong64 3.13.12-1 [2210 kB] Fetched 2210 kB in 0s (9818 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcwb85s1b/libpython3.13_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libreadline8t64 loong64 8.3-4 [181 kB] Fetched 181 kB in 1s (318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7562i8ji/libreadline8t64_8.3-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjansson4 loong64 2.14-2+b4 [41.1 kB] Fetched 41.1 kB in 0s (3977 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppekbrm1b/libjansson4_2.14-2+b4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libelf1t64 loong64 0.195-1 [61.8 kB] Fetched 61.8 kB in 0s (182 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68mz615u/libelf1t64_0.195-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 cython3 loong64 3.1.6+dfsg-2+b1 [3149 kB] Fetched 3149 kB in 1s (4169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpttloegjx/cython3_3.1.6+dfsg-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmpc3 loong64 1.3.1-3 [56.2 kB] Fetched 56.2 kB in 0s (125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyavpejxj/libmpc3_1.3.1-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 patch loong64 2.8-2+b1 [133 kB] Fetched 133 kB in 0s (542 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3emujqeg/patch_2.8-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 bash loong64 5.3-3 [1558 kB] Fetched 1558 kB in 0s (41.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7onkgt_w/bash_5.3-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (425 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpzd2np46v/libaudit-common_4.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 dh-python all 7.20260309 [114 kB] Fetched 114 kB in 0s (5709 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp52u_edo6/dh-python_7.20260309_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libc-bin loong64 2.42-16 [575 kB] Fetched 575 kB in 0s (1324 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph0w36_ym/libc-bin_2.42-16_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgdbm6t64 loong64 1.26-1+b2 [78.7 kB] Fetched 78.7 kB in 0s (492 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0a98oy1o/libgdbm6t64_1.26-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-all-dev loong64 3.13.9-3+b1 [1084 B] Fetched 1084 B in 0s (13.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2hlhv1bo/python3-all-dev_3.13.9-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3-installer all 1.0.0+dfsg1-1 [19.4 kB] Fetched 19.4 kB in 0s (280 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpagivy6fo/python3-installer_1.0.0+dfsg1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libpython3.14-dev loong64 3.14.5-1 [17.1 MB] Fetched 17.1 MB in 2s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpawff2o14/libpython3.14-dev_3.14.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-sklearn all 1.8.0+dfsg-4 [2652 kB] Fetched 2652 kB in 0s (7712 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp52fuj8qn/python3-sklearn_1.8.0+dfsg-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libproc2-0 loong64 2:4.0.4-9+b2 [63.6 kB] Fetched 63.6 kB in 0s (194 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpizp8wf50/libproc2-0_4.0.4-9+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 1s (39.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp74k5td7g/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Fetched 21.2 kB in 0s (199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp45fpd38h/python3-threadpoolctl_3.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dwz loong64 0.16-4 [108 kB] Fetched 108 kB in 1s (152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpde234p3h/dwz_0.16-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 perl-base loong64 5.40.1-7+b1 [1665 kB] Fetched 1665 kB in 1s (2647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps808fyn4/perl-base_5.40.1-7+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3.13-minimal loong64 3.13.12-1 [2222 kB] Fetched 2222 kB in 1s (1548 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp817nid_6/python3.13-minimal_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pytest all 9.0.3-1 [273 kB] Fetched 273 kB in 0s (868 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyjnijwx6/python3-pytest_9.0.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libunistring5 loong64 1.4.2-1 [483 kB] Fetched 483 kB in 0s (1347 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph6j3ykr0/libunistring5_1.4.2-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 libsframe3 loong64 2.46-3 [85.8 kB] Fetched 85.8 kB in 0s (299 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptpdjddgm/libsframe3_2.46-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 python3.13 loong64 3.13.12-1 [776 kB] Fetched 776 kB in 1s (558 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9wibb7ct/python3.13_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblsan0 loong64 16.1.0-1 [1255 kB] Fetched 1255 kB in 0s (2834 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdfkc943j/liblsan0_16.1.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 1s (10.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxilwvl_4/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libssl3t64 loong64 3.6.2-1 [2155 kB] Fetched 2155 kB in 2s (1229 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps0tv89dj/libssl3t64_3.6.2-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 bsdextrautils loong64 2.42-6 [103 kB] Fetched 103 kB in 0s (502 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpccd2x0c5/bsdextrautils_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libc6-dev loong64 2.42-16 [3278 kB] Fetched 3278 kB in 1s (2814 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3qn2q0ip/libc6-dev_2.42-16_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libc-dev-bin loong64 2.42-16 [37.0 kB] Fetched 37.0 kB in 0s (112 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9jlqzkdp/libc-dev-bin_2.42-16_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260514T142722Z unstable/main loong64 linux-libc-dev all 7.0.4-1 [1959 kB] Fetched 1959 kB in 0s (5122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpief867tk/linux-libc-dev_7.0.4-1_all.deb' dpkg-buildpackage: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture loong64 dpkg-source --before-build . dpkg-source: warning: email address 'Equivs Dummy Package Generator ' with single label domain debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: email address 'Equivs Dummy Package Generator ' with single label domain dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_loong64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_loong64.changes dpkg-genchanges: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-genchanges: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpvvb1usb9/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture loong64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.1IshVnrS0w as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.1IshVnrS0w 127.0.0.1 - - [12/Jun/2026 14:36:31] code 404, message File not found 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:38327 ./ InRelease 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:38327 ./ Release [462 B] 127.0.0.1 - - [12/Jun/2026 14:36:31] code 404, message File not found 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:38327 ./ Release.gpg 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:38327 ./ Packages [261 kB] Fetched 261 kB in 0s (2307 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./gcc-16-base_16.1.0-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./libc-gconv-modules-extra_2.42-16_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./libc6_2.42-16_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./libgcc-s1_16.1.0-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./mawk_1.3.4.20260302-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./base-files_14.0_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./libtinfo6_6.6%2b20251231-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./debianutils_5.23.2%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:31] "GET /./bash_5.3-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libacl1_2.3.2-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libattr1_2.5.2-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libgmp10_6.3.0%2bdfsg-5%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libpcre2-8-0_10.46-1%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libselinux1_3.10-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libzstd1_1.5.7%2bdfsg-3%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./zlib1g_1.3.dfsg%2breally1.3.2-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libssl3t64_3.6.2-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./openssl-provider-legacy_3.6.2-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libsystemd0_260.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./coreutils_9.10-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./dash_0.5.12-12%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./diffutils_3.12-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libbz2-1.0_1.0.8-6%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./liblzma5_5.8.3-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libmd0_1.2.0-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./tar_1.35%2bdfsg-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./dpkg_1.23.7_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./findutils_4.10.0-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./grep_3.12-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./gzip_1.13-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./hostname_3.25%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./ncurses-bin_6.6%2b20251231-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libcrypt1_4.5.1-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./perl-base_5.40.1-7%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./sed_4.9-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libcap-ng0_0.9.3-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libaudit1_4.1.2-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libdb5.3t64_5.3.28%2bdfsg2-11%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./debconf_1.5.92_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libpam0g_1.7.0-5%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libpam-modules-bin_1.7.0-5%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libpam-modules_1.7.0-5%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libblkid1_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libmount1_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libsmartcols1_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libudev1_260.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libuuid1_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./util-linux_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libdebconfclient0_0.282%2bb3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./base-passwd_3.6.8%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./libc-bin_2.42-16_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./ncurses-base_6.6%2b20251231-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [12/Jun/2026 14:36:32] "GET /./sysvinit-utils_3.18-1_loong64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.1IshVnrS0w 127.0.0.1 - - [12/Jun/2026 14:36:34] code 404, message File not found 127.0.0.1 - - [12/Jun/2026 14:36:34] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:38327 ./ InRelease 127.0.0.1 - - [12/Jun/2026 14:36:34] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:38327 ./ Release 127.0.0.1 - - [12/Jun/2026 14:36:34] code 404, message File not found 127.0.0.1 - - [12/Jun/2026 14:36:34] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:38327 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpvvb1usb9/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.1IshVnrS0w Reading package lists... Building dependency tree... Reading state information... python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. g++ is already the newest version (4:15.2.0-5+b1). g++ set to manually installed. mawk is already the newest version (1.3.4.20260302-1). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. libacl1 is already the newest version (2.3.2-3). gzip is already the newest version (1.13-1+b1). ncurses-base is already the newest version (6.6+20251231-1). libstdc++6 is already the newest version (16.1.0-1). libstdc++6 set to manually installed. libblas3 is already the newest version (3.12.1-7+b2). libblas3 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). make is already the newest version (4.4.1-3+b1). make set to manually installed. dash is already the newest version (0.5.12-12+b1). libgcc-s1 is already the newest version (16.1.0-1). python3-joblib is already the newest version (1.5.2-1). python3-joblib set to manually installed. python3-pygments is already the newest version (2.19.2+dfsg-1). python3-pygments set to manually installed. libsimde-dev is already the newest version (0.8.4~rc3-5). libsimde-dev set to manually installed. pybuild-plugin-pyproject is already the newest version (7.20260309). pybuild-plugin-pyproject set to manually installed. python3-numpy-dev is already the newest version (1:2.4.4+ds-2). python3-numpy-dev set to manually installed. binutils-common is already the newest version (2.46-3). binutils-common set to manually installed. ncurses-bin is already the newest version (6.6+20251231-1+b1). dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. init-system-helpers is already the newest version (1.69). libpython3-all-dev is already the newest version (3.13.9-3+b1). libpython3-all-dev set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-17). libstdc++-15-dev set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. ca-certificates is already the newest version (20260223). ca-certificates set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). libubsan1 is already the newest version (16.1.0-1). libubsan1 set to manually installed. python3-pip is already the newest version (26.0.1+dfsg-1). python3-pip set to manually installed. python3-typeguard is already the newest version (4.4.4-2). python3-typeguard set to manually installed. binutils-loongarch64-linux-gnu is already the newest version (2.46-3). binutils-loongarch64-linux-gnu set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. gcc is already the newest version (4:15.2.0-5+b1). gcc set to manually installed. libblkid1 is already the newest version (2.42-6). python3.14 is already the newest version (3.14.5-1). python3.14 set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. procps is already the newest version (2:4.0.4-9+b2). procps set to manually installed. libgomp1 is already the newest version (16.1.0-1). libgomp1 set to manually installed. libitm1 is already the newest version (16.1.0-1). libitm1 set to manually installed. gcc-16-base is already the newest version (16.1.0-1). libpython3.14 is already the newest version (3.14.5-1). libpython3.14 set to manually installed. gcc-15 is already the newest version (15.2.0-17). gcc-15 set to manually installed. coreutils is already the newest version (9.10-1). libmount1 is already the newest version (2.42-6). libpam-modules-bin is already the newest version (1.7.0-5+b2). libxml2-16 is already the newest version (2.15.2+dfsg-0.1). libxml2-16 set to manually installed. hostname is already the newest version (3.25+b1). libselinux1 is already the newest version (3.10-1). libsqlite3-0 is already the newest version (3.46.1-9+b1). libsqlite3-0 set to manually installed. groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. python3.14-dev is already the newest version (3.14.5-1). python3.14-dev set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libattr1 is already the newest version (1:2.5.2-4). base-files is already the newest version (14.0). libcap-ng0 is already the newest version (0.9.3-1). tzdata is already the newest version (2026b-1). tzdata set to manually installed. cpp-15 is already the newest version (15.2.0-17). cpp-15 set to manually installed. liblzma5 is already the newest version (5.8.3-1). help2man is already the newest version (1.49.3+b1). help2man set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. openssl-provider-legacy is already the newest version (3.6.2-1). python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. gettext-base is already the newest version (0.23.2-2). gettext-base set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. libpam0g is already the newest version (1.7.0-5+b2). libbz2-1.0 is already the newest version (1.0.8-6+b2). cpp-15-loongarch64-linux-gnu is already the newest version (15.2.0-17). cpp-15-loongarch64-linux-gnu set to manually installed. libpython3-dev is already the newest version (3.13.9-3+b1). libpython3-dev set to manually installed. autoconf is already the newest version (2.72-6). autoconf set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. libdebhelper-perl is already the newest version (13.31). libdebhelper-perl set to manually installed. libpython3.13-stdlib is already the newest version (3.13.12-1). libpython3.13-stdlib set to manually installed. libc6 is already the newest version (2.42-16). python3-cykhash is already the newest version (2.0.0-3+b1). python3-cykhash set to manually installed. libuuid1 is already the newest version (2.42-6). libpcre2-8-0 is already the newest version (10.46-1+b2). python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. liblapack3 is already the newest version (3.12.1-7+b2). liblapack3 set to manually installed. python3-sklearn-lib is already the newest version (1.8.0+dfsg-4). python3-sklearn-lib set to manually installed. binutils is already the newest version (2.46-3). binutils set to manually installed. liblocale-gettext-perl is already the newest version (1.07-9). liblocale-gettext-perl set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. debhelper is already the newest version (13.31). debhelper set to manually installed. libsystemd0 is already the newest version (260.1-1). python3.13-dev is already the newest version (3.13.12-1). python3.13-dev set to manually installed. libudev1 is already the newest version (260.1-1). dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. gcc-15-loongarch64-linux-gnu is already the newest version (15.2.0-17). gcc-15-loongarch64-linux-gnu set to manually installed. libtool is already the newest version (2.5.4-11). libtool set to manually installed. python3-all is already the newest version (3.13.9-3+b1). python3-all set to manually installed. libmagic1t64 is already the newest version (1:5.46-5+b2). libmagic1t64 set to manually installed. grep is already the newest version (3.12-1+b1). python3-pyproject-hooks is already the newest version (1.2.0-1). python3-pyproject-hooks set to manually installed. autopoint is already the newest version (0.23.2-2). autopoint set to manually installed. openssl is already the newest version (3.6.2-1). openssl set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libpython3.14-minimal is already the newest version (3.14.5-1). libpython3.14-minimal set to manually installed. python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. libffi8 is already the newest version (3.5.2-4). libffi8 set to manually installed. python3-minimal is already the newest version (3.13.9-3+b1). python3-minimal set to manually installed. perl is already the newest version (5.40.1-7+b1). perl set to manually installed. libctf0 is already the newest version (2.46-3). libctf0 set to manually installed. libgfortran5 is already the newest version (16.1.0-1). libgfortran5 set to manually installed. libsmartcols1 is already the newest version (2.42-6). xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. libasan8 is already the newest version (16.1.0-1). libasan8 set to manually installed. build-essential is already the newest version (12.12+b1). build-essential set to manually installed. debianutils is already the newest version (5.23.2+b1). libperl5.40 is already the newest version (5.40.1-7+b1). libperl5.40 set to manually installed. libatomic1 is already the newest version (16.1.0-1). libatomic1 set to manually installed. tar is already the newest version (1.35+dfsg-4). libdebconfclient0 is already the newest version (0.282+b3). libmd0 is already the newest version (1.2.0-1). libzstd1 is already the newest version (1.5.7+dfsg-3+b2). libpam-modules is already the newest version (1.7.0-5+b2). libcrypt1 is already the newest version (1:4.5.1-1+b1). cpp is already the newest version (4:15.2.0-5+b1). cpp set to manually installed. libbinutils is already the newest version (2.46-3). libbinutils set to manually installed. libtinfo6 is already the newest version (6.6+20251231-1+b1). libc-gconv-modules-extra is already the newest version (2.42-16). dpkg is already the newest version (1.23.7). cpp-loongarch64-linux-gnu is already the newest version (4:15.2.0-5+b1). cpp-loongarch64-linux-gnu set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. g++-15-loongarch64-linux-gnu is already the newest version (15.2.0-17). g++-15-loongarch64-linux-gnu set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. sysvinit-utils is already the newest version (3.18-1). gcc-15-base is already the newest version (15.2.0-17). gcc-15-base set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b1). rpcsvc-proto set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. python3-packaging is already the newest version (26.0-1). python3-packaging set to manually installed. libcc1-0 is already the newest version (16.1.0-1). libcc1-0 set to manually installed. python3-build is already the newest version (1.4.0-1). python3-build set to manually installed. libmagic-mgc is already the newest version (1:5.46-5+b2). libmagic-mgc set to manually installed. libpython3-stdlib is already the newest version (3.13.9-3+b1). libpython3-stdlib set to manually installed. gettext is already the newest version (0.23.2-2). gettext set to manually installed. libctf-nobfd0 is already the newest version (2.46-3). libctf-nobfd0 set to manually installed. base-passwd is already the newest version (3.6.8+b1). python3.14-minimal is already the newest version (3.14.5-1). python3.14-minimal set to manually installed. automake is already the newest version (1:1.18.1-4). automake set to manually installed. findutils is already the newest version (4.10.0-4). man-db is already the newest version (2.13.1-1+b1). man-db set to manually installed. g++-loongarch64-linux-gnu is already the newest version (4:15.2.0-5+b1). g++-loongarch64-linux-gnu set to manually installed. util-linux is already the newest version (2.42-6). media-types is already the newest version (14.0.0). media-types set to manually installed. gcc-loongarch64-linux-gnu is already the newest version (4:15.2.0-5+b1). gcc-loongarch64-linux-gnu set to manually installed. file is already the newest version (1:5.46-5+b2). file set to manually installed. libncursesw6 is already the newest version (6.6+20251231-1+b1). libncursesw6 set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). python3-scipy is already the newest version (1.16.3-4+b1). python3-scipy set to manually installed. libexpat1 is already the newest version (2.8.0-2). libexpat1 set to manually installed. bc is already the newest version (1.07.1-4+b1). bc set to manually installed. python3 is already the newest version (3.13.9-3+b1). python3 set to manually installed. libqhull-r8.0 is already the newest version (2020.2-9). libqhull-r8.0 set to manually installed. debconf is already the newest version (1.5.92). libpython3.13-dev is already the newest version (3.13.12-1). libpython3.13-dev set to manually installed. libisl23 is already the newest version (0.27-2). libisl23 set to manually installed. g++-15 is already the newest version (15.2.0-17). g++-15 set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. python3-numpy is already the newest version (1:2.4.4+ds-2). python3-numpy set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libgcc-15-dev is already the newest version (15.2.0-17). libgcc-15-dev set to manually installed. libtsan2 is already the newest version (16.1.0-1). libtsan2 set to manually installed. python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. libpython3.14-stdlib is already the newest version (3.14.5-1). libpython3.14-stdlib set to manually installed. python3-dev is already the newest version (3.13.9-3+b1). python3-dev set to manually installed. python3-hmmlearn is already the newest version (0.3.3-1). python3-hmmlearn set to manually installed. diffutils is already the newest version (1:3.12-1+b1). libjs-sphinxdoc is already the newest version (9.1.0-3). libjs-sphinxdoc set to manually installed. python3-wheel is already the newest version (0.47.0-1). python3-wheel set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. libexpat1-dev is already the newest version (2.8.0-2). libexpat1-dev set to manually installed. libpython3.13-minimal is already the newest version (3.13.12-1). libpython3.13-minimal set to manually installed. sed is already the newest version (4.9-3). libpython3.13 is already the newest version (3.13.12-1). libpython3.13 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. libelf1t64 is already the newest version (0.195-1). libelf1t64 set to manually installed. cython3 is already the newest version (3.1.6+dfsg-2+b1). cython3 set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. patch is already the newest version (2.8-2+b1). patch set to manually installed. bash is already the newest version (5.3-3). libaudit-common is already the newest version (1:4.1.2-1). dh-python is already the newest version (7.20260309). dh-python set to manually installed. libc-bin is already the newest version (2.42-16). libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. python3-all-dev is already the newest version (3.13.9-3+b1). python3-all-dev set to manually installed. python3-installer is already the newest version (1.0.0+dfsg1-1). python3-installer set to manually installed. libpython3.14-dev is already the newest version (3.14.5-1). libpython3.14-dev set to manually installed. python3-sklearn is already the newest version (1.8.0+dfsg-4). python3-sklearn set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9+b2). libproc2-0 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. python3-threadpoolctl is already the newest version (3.1.0-1). python3-threadpoolctl set to manually installed. dwz is already the newest version (0.16-4). dwz set to manually installed. perl-base is already the newest version (5.40.1-7+b1). python3.13-minimal is already the newest version (3.13.12-1). python3.13-minimal set to manually installed. python3-pytest is already the newest version (9.0.3-1). python3-pytest set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libsframe3 is already the newest version (2.46-3). libsframe3 set to manually installed. python3.13 is already the newest version (3.13.12-1). python3.13 set to manually installed. liblsan0 is already the newest version (16.1.0-1). liblsan0 set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libssl3t64 is already the newest version (3.6.2-1). bsdextrautils is already the newest version (2.42-6). bsdextrautils set to manually installed. libc6-dev is already the newest version (2.42-16). libc6-dev set to manually installed. libc-dev-bin is already the newest version (2.42-16). libc-dev-bin set to manually installed. linux-libc-dev is already the newest version (7.0.4-1). linux-libc-dev set to manually installed. Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.1IshVnrS0w (Reading database ... 24166 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.1IshVnrS0w I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.1IshVnrS0w I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.1IshVnrS0w... I: success in 426.8761 seconds Downloading dependency 1 of 216: python3-pluggy:loong64=1.6.0-2 Downloading dependency 2 of 216: g++:loong64=4:15.2.0-5+b1 Downloading dependency 3 of 216: mawk:loong64=1.3.4.20260302-1 Downloading dependency 4 of 216: zlib1g-dev:loong64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 5 of 216: libacl1:loong64=2.3.2-3 Downloading dependency 6 of 216: gzip:loong64=1.13-1+b1 Downloading dependency 7 of 216: ncurses-base:loong64=6.6+20251231-1 Downloading dependency 8 of 216: libstdc++6:loong64=16.1.0-1 Downloading dependency 9 of 216: libblas3:loong64=3.12.1-7+b2 Downloading dependency 10 of 216: libpam-runtime:loong64=1.7.0-5 Downloading dependency 11 of 216: make:loong64=4.4.1-3+b1 Downloading dependency 12 of 216: dash:loong64=0.5.12-12+b1 Downloading dependency 13 of 216: libgcc-s1:loong64=16.1.0-1 Downloading dependency 14 of 216: python3-joblib:loong64=1.5.2-1 Downloading dependency 15 of 216: python3-pygments:loong64=2.19.2+dfsg-1 Downloading 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dependency 197 of 216: python3-installer:loong64=1.0.0+dfsg1-1 Downloading dependency 198 of 216: libpython3.14-dev:loong64=3.14.5-1 Downloading dependency 199 of 216: python3-sklearn:loong64=1.8.0+dfsg-4 Downloading dependency 200 of 216: libproc2-0:loong64=2:4.0.4-9+b2 Downloading dependency 201 of 216: intltool-debian:loong64=0.35.0+20060710.6 Downloading dependency 202 of 216: python3-threadpoolctl:loong64=3.1.0-1 Downloading dependency 203 of 216: dwz:loong64=0.16-4 Downloading dependency 204 of 216: perl-base:loong64=5.40.1-7+b1 Downloading dependency 205 of 216: python3.13-minimal:loong64=3.13.12-1 Downloading dependency 206 of 216: python3-pytest:loong64=9.0.3-1 Downloading dependency 207 of 216: libunistring5:loong64=1.4.2-1 Downloading dependency 208 of 216: libsframe3:loong64=2.46-3 Downloading dependency 209 of 216: python3.13:loong64=3.13.12-1 Downloading dependency 210 of 216: liblsan0:loong64=16.1.0-1 Downloading dependency 211 of 216: python3-jaraco.text:loong64=4.0.0-1 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/srv/rebuilderd/tmp/rebuilderdSnjyLY/inputs/macs_3.0.4-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl sbuild (Debian sbuild) 0.91.9 (05 May 2026) on loong64-01 +==============================================================================+ | macs 3.0.4-1 (loong64) Fri, 12 Jun 2026 18:43:40 +0000 | +==============================================================================+ Package: macs Version: 3.0.4-1 Source Version: 3.0.4-1 Distribution: unstable Machine Architecture: loong64 Host Architecture: loong64 Build Architecture: loong64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildNGeu9G/debrebuild.tar.1PSkjxTAtZWt to /srv/rebuilderd/tmp/tmp.sbuild.FGatALkUoS... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 12 Jun 2026 18:44:15 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdSnjyLY/inputs/macs_3.0.4-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdSnjyLY/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 12 Jun 2026 18:44:25 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-q1w5Uf/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 12 Jun 2026 18:44:50 +0000 | +------------------------------------------------------------------------------+ Arch check ok (loong64 included in any) +------------------------------------------------------------------------------+ | Build environment Fri, 12 Jun 2026 18:44:52 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-loong64 #1 SMP PREEMPT Debian 7.0.10-1 (2026-05-27) loong64 (loongarch64) Toolchain package versions: binutils_2.46-3 dpkg-dev_1.23.7 g++-15_15.2.0-17 gcc-15_15.2.0-17 libc6-dev_2.42-16 libstdc++-15-dev_15.2.0-17 libstdc++6_16.1.0-1 linux-libc-dev_7.0.4-1 Package versions: autoconf_2.72-6 automake_1:1.18.1-4 autopoint_0.23.2-2 autotools-dev_20240727.1+nmu1 base-files_14.0 base-passwd_3.6.8+b1 bash_5.3-3 bc_1.07.1-4+b1 binutils_2.46-3 binutils-common_2.46-3 binutils-loongarch64-linux-gnu_2.46-3 bsdextrautils_2.42-6 build-essential_12.12+b1 bzip2_1.0.8-6+b2 ca-certificates_20260223 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.2.0-17 cpp-15-loongarch64-linux-gnu_15.2.0-17 cpp-loongarch64-linux-gnu_4:15.2.0-5+b1 cython3_3.1.6+dfsg-2+b1 dash_0.5.12-12+b1 debconf_1.5.92 debhelper_13.31 debianutils_5.23.2+b1 dh-autoreconf_22 dh-python_7.20260309 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1+b1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 file_1:5.46-5+b2 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.2.0-17 g++-15-loongarch64-linux-gnu_15.2.0-17 g++-loongarch64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.2.0-17 gcc-15-base_15.2.0-17 gcc-15-loongarch64-linux-gnu_15.2.0-17 gcc-16-base_16.1.0-1 gcc-loongarch64-linux-gnu_4:15.2.0-5+b1 gettext_0.23.2-2 gettext-base_0.23.2-2 grep_3.12-1+b1 groff-base_1.24.1-1 gzip_1.13-1+b1 help2man_1.49.3+b1 hostname_3.25+b1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libarchive-zip-perl_1.68-1 libasan8_16.1.0-1 libatomic1_16.1.0-1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-3 libblas3_3.12.1-7+b2 libblkid1_2.42-6 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-16 libc-dev-bin_2.42-16 libc-gconv-modules-extra_2.42-16 libc6_2.42-16 libc6-dev_2.42-16 libcap-ng0_0.9.3-1 libcc1-0_16.1.0-1 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46-3 libctf0_2.46-3 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.282+b3 libdebhelper-perl_13.31 libdpkg-perl_1.23.7 libelf1t64_0.195-1 libexpat1_2.8.0-2 libexpat1-dev_2.8.0-2 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-17 libgcc-s1_16.1.0-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran5_16.1.0-1 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.1.0-1 libisl23_0.27-2 libitm1_16.1.0-1 libjansson4_2.14-2+b4 libjs-sphinxdoc_9.1.0-3 liblapack3_3.12.1-7+b2 liblocale-gettext-perl_1.07-9 liblsan0_16.1.0-1 liblzma5_5.8.3-1 libmagic-mgc_1:5.46-5+b2 libmagic1t64_1:5.46-5+b2 libmd0_1.2.0-1 libmount1_2.42-6 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20251231-1+b1 libpam-modules_1.7.0-5+b2 libpam-modules-bin_1.7.0-5+b2 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b2 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-7+b1 libpipeline1_1.5.8-3 libproc2-0_2:4.0.4-9+b2 libpython3-all-dev_3.13.9-3+b1 libpython3-dev_3.13.9-3+b1 libpython3-stdlib_3.13.9-3+b1 libpython3.13_3.13.12-1 libpython3.13-dev_3.13.12-1 libpython3.13-minimal_3.13.12-1 libpython3.13-stdlib_3.13.12-1 libpython3.14_3.14.5-1 libpython3.14-dev_3.14.5-1 libpython3.14-minimal_3.14.5-1 libpython3.14-stdlib_3.14.5-1 libqhull-r8.0_2020.2-9 libreadline8t64_8.3-4 libselinux1_3.10-1 libsframe3_2.46-3 libsimde-dev_0.8.4~rc3-5 libsmartcols1_2.42-6 libsqlite3-0_3.46.1-9+b1 libssl3t64_3.6.2-1 libstdc++-15-dev_15.2.0-17 libstdc++6_16.1.0-1 libsystemd0_260.1-1 libtinfo6_6.6+20251231-1+b1 libtool_2.5.4-11 libtsan2_16.1.0-1 libubsan1_16.1.0-1 libuchardet0_0.0.8-2+b2 libudev1_260.1-1 libunistring5_1.4.2-1 libuuid1_2.42-6 libxml2-16_2.15.2+dfsg-0.1 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.0.4-1 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260302-1 media-types_14.0.0 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1+b1 netbase_6.5 openssl_3.6.2-1 openssl-provider-legacy_3.6.2-1 patch_2.8-2+b1 perl_5.40.1-7+b1 perl-base_5.40.1-7+b1 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 procps_2:4.0.4-9+b2 pybuild-plugin-pyproject_7.20260309 python3_3.13.9-3+b1 python3-all_3.13.9-3+b1 python3-all-dev_3.13.9-3+b1 python3-autocommand_2.2.2-4 python3-build_1.4.0-1 python3-cykhash_2.0.0-3+b1 python3-decorator_5.2.1-2 python3-dev_3.13.9-3+b1 python3-hmmlearn_0.3.3-1 python3-inflect_7.5.0-1 python3-iniconfig_2.1.0-2 python3-installer_1.0.0+dfsg1-1 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-joblib_1.5.2-1 python3-minimal_3.13.9-3+b1 python3-more-itertools_10.8.0-1 python3-numpy_1:2.4.4+ds-2 python3-numpy-dev_1:2.4.4+ds-2 python3-packaging_26.0-1 python3-pip_26.0.1+dfsg-1 python3-pkg-resources_78.1.1-0.1 python3-pluggy_1.6.0-2 python3-pygments_2.19.2+dfsg-1 python3-pyproject-hooks_1.2.0-1 python3-pytest_9.0.3-1 python3-scipy_1.16.3-4+b1 python3-setuptools_78.1.1-0.1 python3-sklearn_1.8.0+dfsg-4 python3-sklearn-lib_1.8.0+dfsg-4 python3-threadpoolctl_3.1.0-1 python3-typeguard_4.4.4-2 python3-typing-extensions_4.15.0-2 python3-wheel_0.47.0-1 python3-zipp_3.23.0-1 python3.13_3.13.12-1 python3.13-dev_3.13.12-1 python3.13-minimal_3.13.12-1 python3.14_3.14.5-1 python3.14-dev_3.14.5-1 python3.14-minimal_3.14.5-1 readline-common_8.3-4 rpcsvc-proto_1.4.3-1+b1 sed_4.9-3 sensible-utils_0.0.26 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 tzdata_2026b-1 util-linux_2.42-6 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 12 Jun 2026 18:44:52 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 3.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev Package-List: macs deb science optional arch=any Checksums-Sha1: e6265ce4bf0e670ff5252543ebcf7474f2bd7c1d 200470087 macs_3.0.4.orig.tar.gz e972f9e6655fc8cbd8822c572639bea9ad87058a 1268072 macs_3.0.4-1.debian.tar.xz Checksums-Sha256: e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 200470087 macs_3.0.4.orig.tar.gz 3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f 1268072 macs_3.0.4-1.debian.tar.xz Files: 0328e6d35f0f06645732f6fa9d20eb4f 200470087 macs_3.0.4.orig.tar.gz 659176576e9d93e7a7313bbb6fe84c5c 1268072 macs_3.0.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmoFqbEACgkQPCZ2P2xn 5uJ37w//U+jjxj598TdT6Z/9whLbhcwgMZDmHd6351JqnTkNhbOcrcBXFCMt1RYQ F7VVpekJ1ZyNbCvV7Q5OqUsu2j/Zvl6zDBOjj3oR3ZM+oxu7nV49YPcmtkRCqp1B cyFz2cJHvJewsjQKcmELXitrNSEw4mrd3tzUBRGmU6AucQQgSIqV3glxQ08bq+rr Vw3THWPB+yFTSPP/xqGU5h3Z3hm+Bv13oikW01n5i3KO+HX/1CzuqzhL6rCl4yum pCWQ4XnokLo/WYTORs+0BFT2LVPscmoXg++ie/bpL2528ONHEsjKt02pkGWJZpPU Z05RNU7soUD9ziJ0QMOWNIo14hCUCjjxJbw3HSahjjiB5MI1eJElawpECZa2YZKv h34O46ftQsIPRp5RLzWGsk1IW/GzV33zu/0ZL7K0/3daPRkJRP+geC9nC7JfBINV rHGUCuEhVOKkajrBApp2K78SmbL3LJJmYrbTrnOlIAB5zFUOrIGbBpmIPNu/2nxy sT3DyJWi7FZKWogSBpMCvL7i72NsIs2+PGyqzBIcFboF+jK06mmq188RF/Q5Ax8D k691ldWKdmN4+8SMdSAgNWmkbyxKjus91/27lmTizXcgmJI8UOt2klN3lA+4mwqd iX9gLWUwwkigLh2UwyzhdOjsYMJpZWnGkZVfDI1y7aMvqfPkiRo= =4T3t -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./macs_3.0.4-1.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./macs_3.0.4-1.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting macs in /build/reproducible-path/macs-3.0.4 dpkg-source: info: unpacking macs_3.0.4.orig.tar.gz dpkg-source: info: unpacking macs_3.0.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying keep_debug dpkg-source: info: applying simde.patch clean up apt cache ------------------ Can't exec "apt-get": No such file or directory at /usr/libexec/sbuild-usernsexec line 613. Failed to exec: apt-get: No such file or directory at /usr/libexec/sbuild-usernsexec line 614. E: cleaning the apt cache failed with 512 Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1778749244 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 3.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture loong64 dpkg-source: info: using options from /build/reproducible-path/macs-3.0.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' for pyx in $(find MACS3/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3 * Building wheel... warning: MACS3/Signal/PairedEndTrack.py:367:15: Unknown type declaration 'cnp.void' in annotation, ignoring warning: MACS3/Signal/PairedEndTrack.py:1611:15: Unknown type declaration 'cnp.void' in annotation, ignoring Compiling MACS3/Signal/HMMR_EM.py because it changed. Compiling MACS3/Signal/HMMR_Signal_Processing.py because it changed. Compiling MACS3/Signal/HMMR_HMM.py because it changed. Compiling MACS3/Signal/Prob.py because it changed. Compiling MACS3/Signal/Region.py because it changed. Compiling MACS3/Signal/Pileup.py because it changed. Compiling MACS3/Signal/PileupV2.py because it changed. Compiling MACS3/Signal/PeakModel.py because it changed. Compiling MACS3/Signal/PeakDetect.py because it changed. Compiling MACS3/Signal/SignalProcessing.py because it changed. Compiling MACS3/Signal/FixWidthTrack.py because it changed. Compiling MACS3/Signal/PairedEndTrack.py because it changed. Compiling MACS3/Signal/BedGraph.py because it changed. Compiling MACS3/Signal/ScoreTrack.py because it changed. Compiling MACS3/Signal/CallPeakUnit.py because it changed. Compiling MACS3/Signal/VariantStat.py because it changed. Compiling MACS3/Signal/ReadAlignment.py because it changed. Compiling MACS3/Signal/RACollection.py because it changed. Compiling MACS3/Signal/UnitigRACollection.py because it changed. Compiling MACS3/Signal/PosReadsInfo.py because it changed. Compiling MACS3/Signal/PeakVariants.py because it changed. Compiling MACS3/IO/Parser.py because it changed. Compiling MACS3/IO/PeakIO.py because it changed. Compiling MACS3/IO/BedGraphIO.py because it changed. Compiling MACS3/IO/BAM.py because it changed. [ 1/25] Cythonizing MACS3/IO/BAM.py [ 2/25] Cythonizing MACS3/IO/BedGraphIO.py [ 3/25] Cythonizing MACS3/IO/Parser.py [ 4/25] Cythonizing MACS3/IO/PeakIO.py [ 5/25] Cythonizing MACS3/Signal/BedGraph.py [ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.py [ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.py [ 8/25] Cythonizing MACS3/Signal/HMMR_EM.py [ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.py [10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.py [11/25] Cythonizing MACS3/Signal/PairedEndTrack.py [12/25] Cythonizing MACS3/Signal/PeakDetect.py [13/25] Cythonizing MACS3/Signal/PeakModel.py [14/25] Cythonizing MACS3/Signal/PeakVariants.py [15/25] Cythonizing MACS3/Signal/Pileup.py [16/25] Cythonizing MACS3/Signal/PileupV2.py [17/25] Cythonizing MACS3/Signal/PosReadsInfo.py [18/25] Cythonizing MACS3/Signal/Prob.py [19/25] Cythonizing MACS3/Signal/RACollection.py [20/25] Cythonizing MACS3/Signal/ReadAlignment.py [21/25] Cythonizing MACS3/Signal/Region.py [22/25] Cythonizing MACS3/Signal/ScoreTrack.py [23/25] Cythonizing MACS3/Signal/SignalProcessing.py [24/25] Cythonizing MACS3/Signal/UnitigRACollection.py [25/25] Cythonizing MACS3/Signal/VariantStat.py running bdist_wheel running build running build_py creating build/lib.linux-loongarch64-cpython-314/MACS3 copying MACS3/__init__.py -> build/lib.linux-loongarch64-cpython-314/MACS3 creating build/lib.linux-loongarch64-cpython-314/MACS3/IO copying MACS3/IO/PeakIO.py -> build/lib.linux-loongarch64-cpython-314/MACS3/IO copying MACS3/IO/BedGraphIO.py -> build/lib.linux-loongarch64-cpython-314/MACS3/IO copying MACS3/IO/BAM.py -> build/lib.linux-loongarch64-cpython-314/MACS3/IO copying MACS3/IO/Parser.py -> build/lib.linux-loongarch64-cpython-314/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-loongarch64-cpython-314/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-loongarch64-cpython-314/MACS3/IO creating build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakModel.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/SignalProcessing.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/PosReadsInfo.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/PairedEndTrack.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/ScoreTrack.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/Region.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/BedGraph.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/PileupV2.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/Pileup.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/FixWidthTrack.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakVariants.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_HMM.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_Signal_Processing.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/ReadAlignment.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/Prob.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/CallPeakUnit.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/VariantStat.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_EM.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/RACollection.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakDetect.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/UnitigRACollection.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal creating build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Commands creating build/lib.linux-loongarch64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-loongarch64-cpython-314/MACS3/Utilities running egg_info creating MACS3.egg-info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt writing manifest file 'MACS3.egg-info/SOURCES.txt' dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no files found matching '*.pyx' under directory 'MACS3' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' creating build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bfc.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bseq.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bubble.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/example.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/fml.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/htab.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/htab.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/internal.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/khash.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kmer.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kseq.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksort.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kstring.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kthread.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kvec.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mag.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mag.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/misc.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rle.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rle.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rope.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rope.h -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/unitig.c -> build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite copying MACS3/Signal/RACollection.pxd -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.c -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.h -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.pxd -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/swalign.c -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal copying MACS3/Signal/swalign.h -> build/lib.linux-loongarch64-cpython-314/MACS3/Signal running build_ext building 'MACS3.Signal.HMMR_EM' extension building 'MACS3.Signal.HMMR_Signal_Processing' extension creating build/temp.linux-loongarch64-cpython-314/MACS3/Signal building 'MACS3.Signal.HMMR_HMM' extension creating build/temp.linux-loongarch64-cpython-314/MACS3/Signal creating build/temp.linux-loongarch64-cpython-314/MACS3/Signal loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_HMM.o -w -O3 building 'MACS3.Signal.Prob' extension building 'MACS3.Signal.Region' extension building 'MACS3.Signal.Pileup' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_EM.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/Region.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/Region.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Prob.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/Prob.o -w -O3 building 'MACS3.Signal.PileupV2' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Pileup.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/Pileup.o -w -O3 building 'MACS3.Signal.PeakModel' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PeakModel.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PeakModel.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PileupV2.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PileupV2.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_HMM.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PileupV2.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PileupV2.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PeakDetect.o -w -O3 building 'MACS3.Signal.SignalProcessing' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/SignalProcessing.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/FixWidthTrack.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_EM.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PairedEndTrack.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/cPosValCalculation.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/Pileup.o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/cPosValCalculation.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Pileup.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.BedGraph' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/BedGraph.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/BedGraph.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/Prob.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Prob.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/ScoreTrack.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/Region.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Region.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/CallPeakUnit.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PeakModel.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakModel.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/VariantStat.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/VariantStat.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/SignalProcessing.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/ReadAlignment.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PeakDetect.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/RACollection.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/VariantStat.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/VariantStat.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/UnitigRACollection.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/FixWidthTrack.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PosReadsInfo.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/ReadAlignment.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-loongarch64-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PeakVariants.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/swalign.c -o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/UnitigRACollection.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP building 'MACS3.IO.Parser' extension creating build/temp.linux-loongarch64-cpython-314/MACS3/IO loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/Parser.c -o build/temp.linux-loongarch64-cpython-314/MACS3/IO/Parser.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/htab.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mag.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/CallPeakUnit.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-loongarch64-linux-gnu.so building 'MACS3.IO.PeakIO' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/PeakIO.c -o build/temp.linux-loongarch64-cpython-314/MACS3/IO/PeakIO.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PosReadsInfo.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-loongarch64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-loongarch64-cpython-314/MACS3/IO/BedGraphIO.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/misc.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PeakVariants.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-loongarch64-linux-gnu.so building 'MACS3.IO.BAM' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/BAM.c -o build/temp.linux-loongarch64-cpython-314/MACS3/IO/BAM.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rle.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rope.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/ScoreTrack.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/IO/BedGraphIO.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/RACollection.o build/temp.linux-loongarch64-cpython-314/MACS3/Signal/swalign.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/bfc.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/bseq.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/bubble.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/htab.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/ksw.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/kthread.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/mag.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/misc.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/mrope.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/rld0.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/rle.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/rope.o build/temp.linux-loongarch64-cpython-314/MACS3/fermi-lite/unitig.o -L/usr/lib/loongarch64-linux-gnu -lm -lz -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/RACollection.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/PairedEndTrack.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/Signal/BedGraph.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-314/MACS3/Signal/BedGraph.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/IO/BAM.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-314/MACS3/IO/BAM.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/IO/Parser.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/IO/Parser.cpython-314-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-314/MACS3/IO/PeakIO.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-314/MACS3/IO/PeakIO.cpython-314-loongarch64-linux-gnu.so running build_scripts creating build/scripts-3.14 copying and adjusting bin/macs3 -> build/scripts-3.14 changing mode of build/scripts-3.14/macs3 from 644 to 755 installing to build/bdist.linux-loongarch64/wheel running install running install_lib creating build/bdist.linux-loongarch64/wheel creating build/bdist.linux-loongarch64/wheel/MACS3 creating build/bdist.linux-loongarch64/wheel/MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/kthread.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/mrope.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/ksw.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/rld0.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/rle.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/example.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/mag.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/fml.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/bfc.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/internal.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/unitig.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/ksw.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/mrope.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/misc.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/rld0.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/kvec.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/ksort.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/htab.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/bseq.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/rle.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/kstring.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/bubble.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/htab.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/mag.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/kmer.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/khash.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/rope.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/kseq.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-314/MACS3/fermi-lite/rope.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite creating build/bdist.linux-loongarch64/wheel/MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-314/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands creating build/bdist.linux-loongarch64/wheel/MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/RACollection.pxd -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakModel.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/SignalProcessing.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PosReadsInfo.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/RACollection.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PairedEndTrack.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/ScoreTrack.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Prob.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/cPosValCalculation.h -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Region.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/BedGraph.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/cPosValCalculation.c -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PileupV2.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/swalign.c -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Pileup.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/FixWidthTrack.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/VariantStat.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakVariants.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PileupV2.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_HMM.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Pileup.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/ReadAlignment.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Prob.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/CallPeakUnit.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/Region.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/BedGraph.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/VariantStat.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/swalign.h -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/HMMR_EM.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakModel.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/RACollection.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/PeakDetect.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/UnitigRACollection.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/Signal/cPosValCalculation.pxd -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-314/MACS3/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3 creating build/bdist.linux-loongarch64/wheel/MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/PeakIO.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/PeakIO.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/BAM.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/BedGraphIO.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/BAM.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/Parser.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/OutputWriter.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/Parser.cpython-314-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-314/MACS3/IO/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO creating build/bdist.linux-loongarch64/wheel/MACS3/Utilities copying build/lib.linux-loongarch64-cpython-314/MACS3/Utilities/Constants.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Utilities copying build/lib.linux-loongarch64-cpython-314/MACS3/Utilities/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Utilities copying build/lib.linux-loongarch64-cpython-314/MACS3/Utilities/Logger.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Utilities copying build/lib.linux-loongarch64-cpython-314/MACS3/Utilities/OptValidator.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Utilities running install_egg_info Copying MACS3.egg-info to build/bdist.linux-loongarch64/wheel/./MACS3-3.0.4.egg-info running install_scripts creating build/bdist.linux-loongarch64/wheel/macs3-3.0.4.data/scripts copying build/scripts-3.14/macs3 -> build/bdist.linux-loongarch64/wheel/macs3-3.0.4.data/scripts changing mode of build/bdist.linux-loongarch64/wheel/macs3-3.0.4.data/scripts/macs3 to 755 creating build/bdist.linux-loongarch64/wheel/macs3-3.0.4.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/.tmp-b9vtfs4f/macs3-3.0.4-cp314-cp314-linux_loongarch64.whl' and adding 'build/bdist.linux-loongarch64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/IO/BAM.py' adding 'MACS3/IO/BedGraphIO.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.py' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/IO/Parser.py' adding 'MACS3/IO/PeakIO.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/IO/PeakIO.py' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/BedGraph.py' adding 'MACS3/Signal/CallPeakUnit.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.py' adding 'MACS3/Signal/FixWidthTrack.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.py' adding 'MACS3/Signal/HMMR_EM.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.py' adding 'MACS3/Signal/HMMR_HMM.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.py' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.py' adding 'MACS3/Signal/PairedEndTrack.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.py' adding 'MACS3/Signal/PeakDetect.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.py' adding 'MACS3/Signal/PeakModel.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.py' adding 'MACS3/Signal/PeakVariants.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.py' adding 'MACS3/Signal/Pileup.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/Pileup.py' adding 'MACS3/Signal/PileupV2.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.py' adding 'MACS3/Signal/PosReadsInfo.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.py' adding 'MACS3/Signal/Prob.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/Prob.py' adding 'MACS3/Signal/RACollection.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/RACollection.pxd' adding 'MACS3/Signal/RACollection.py' adding 'MACS3/Signal/ReadAlignment.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.py' adding 'MACS3/Signal/Region.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/Region.py' adding 'MACS3/Signal/ScoreTrack.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.py' adding 'MACS3/Signal/SignalProcessing.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.py' adding 'MACS3/Signal/UnitigRACollection.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.py' adding 'MACS3/Signal/VariantStat.cpython-314-loongarch64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.py' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Signal/cPosValCalculation.c' adding 'MACS3/Signal/cPosValCalculation.h' adding 'MACS3/Signal/cPosValCalculation.pxd' adding 'MACS3/Signal/swalign.c' adding 'MACS3/Signal/swalign.h' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'MACS3/fermi-lite/bfc.c' adding 'MACS3/fermi-lite/bseq.c' adding 'MACS3/fermi-lite/bubble.c' adding 'MACS3/fermi-lite/example.c' adding 'MACS3/fermi-lite/fml.h' adding 'MACS3/fermi-lite/htab.c' adding 'MACS3/fermi-lite/htab.h' adding 'MACS3/fermi-lite/internal.h' adding 'MACS3/fermi-lite/khash.h' adding 'MACS3/fermi-lite/kmer.h' adding 'MACS3/fermi-lite/kseq.h' adding 'MACS3/fermi-lite/ksort.h' adding 'MACS3/fermi-lite/kstring.h' adding 'MACS3/fermi-lite/ksw.c' adding 'MACS3/fermi-lite/ksw.h' adding 'MACS3/fermi-lite/kthread.c' adding 'MACS3/fermi-lite/kvec.h' adding 'MACS3/fermi-lite/mag.c' adding 'MACS3/fermi-lite/mag.h' adding 'MACS3/fermi-lite/misc.c' adding 'MACS3/fermi-lite/mrope.c' adding 'MACS3/fermi-lite/mrope.h' adding 'MACS3/fermi-lite/rld0.c' adding 'MACS3/fermi-lite/rld0.h' adding 'MACS3/fermi-lite/rle.c' adding 'MACS3/fermi-lite/rle.h' adding 'MACS3/fermi-lite/rope.c' adding 'MACS3/fermi-lite/rope.h' adding 'MACS3/fermi-lite/unitig.c' adding 'macs3-3.0.4.data/scripts/macs3' adding 'macs3-3.0.4.dist-info/licenses/LICENSE' adding 'macs3-3.0.4.dist-info/METADATA' adding 'macs3-3.0.4.dist-info/WHEEL' adding 'macs3-3.0.4.dist-info/top_level.txt' adding 'macs3-3.0.4.dist-info/RECORD' removing build/bdist.linux-loongarch64/wheel Successfully built macs3-3.0.4-cp314-cp314-linux_loongarch64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module I: pybuild plugin_pyproject:142: Building wheel for python3.13 with "build" module I: pybuild base:385: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3 * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-loongarch64-cpython-313/MACS3 copying MACS3/__init__.py -> build/lib.linux-loongarch64-cpython-313/MACS3 creating build/lib.linux-loongarch64-cpython-313/MACS3/IO copying MACS3/IO/PeakIO.py -> build/lib.linux-loongarch64-cpython-313/MACS3/IO copying MACS3/IO/BedGraphIO.py -> build/lib.linux-loongarch64-cpython-313/MACS3/IO copying MACS3/IO/BAM.py -> build/lib.linux-loongarch64-cpython-313/MACS3/IO copying MACS3/IO/Parser.py -> build/lib.linux-loongarch64-cpython-313/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-loongarch64-cpython-313/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-loongarch64-cpython-313/MACS3/IO creating build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakModel.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/SignalProcessing.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/PosReadsInfo.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/PairedEndTrack.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/ScoreTrack.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/Region.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/BedGraph.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/PileupV2.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/Pileup.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/FixWidthTrack.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakVariants.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_HMM.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_Signal_Processing.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/ReadAlignment.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/Prob.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/CallPeakUnit.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/VariantStat.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_EM.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/RACollection.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakDetect.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/UnitigRACollection.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal creating build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Commands creating build/lib.linux-loongarch64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-loongarch64-cpython-313/MACS3/Utilities running egg_info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no files found matching '*.pyx' under directory 'MACS3' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' creating build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bfc.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bseq.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bubble.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/example.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/fml.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/htab.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/htab.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/internal.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/khash.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kmer.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kseq.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksort.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kstring.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kthread.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kvec.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mag.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mag.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/misc.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rle.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rle.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rope.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rope.h -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/unitig.c -> build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite copying MACS3/Signal/RACollection.pxd -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.c -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.h -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.pxd -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/swalign.c -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal copying MACS3/Signal/swalign.h -> build/lib.linux-loongarch64-cpython-313/MACS3/Signal running build_ext building 'MACS3.Signal.HMMR_EM' extension building 'MACS3.Signal.HMMR_HMM' extension creating build/temp.linux-loongarch64-cpython-313/MACS3/Signal building 'MACS3.Signal.Prob' extension creating build/temp.linux-loongarch64-cpython-313/MACS3/Signal building 'MACS3.Signal.HMMR_Signal_Processing' extension building 'MACS3.Signal.Region' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/Region.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/Region.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_EM.o -w -O3 creating build/temp.linux-loongarch64-cpython-313/MACS3/Signal loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 building 'MACS3.Signal.PileupV2' extension building 'MACS3.Signal.Pileup' extension building 'MACS3.Signal.PeakModel' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_HMM.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Prob.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/Prob.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PileupV2.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PileupV2.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Pileup.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/Pileup.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakModel.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PeakModel.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PileupV2.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PileupV2.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PeakDetect.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_HMM.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/SignalProcessing.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/FixWidthTrack.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_EM.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PairedEndTrack.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/cPosValCalculation.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/Prob.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Prob.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.BedGraph' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/BedGraph.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/BedGraph.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/Pileup.o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/cPosValCalculation.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Pileup.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/ScoreTrack.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/Region.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Region.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/CallPeakUnit.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PeakModel.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakModel.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/VariantStat.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/VariantStat.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/SignalProcessing.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/ReadAlignment.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PeakDetect.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/RACollection.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/VariantStat.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/VariantStat.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/UnitigRACollection.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/FixWidthTrack.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PosReadsInfo.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/ReadAlignment.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-loongarch64-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PeakVariants.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/swalign.c -o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/UnitigRACollection.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-loongarch64-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-loongarch64-cpython-313/MACS3/IO loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/Parser.c -o build/temp.linux-loongarch64-cpython-313/MACS3/IO/Parser.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/htab.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mag.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/CallPeakUnit.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-loongarch64-linux-gnu.so building 'MACS3.IO.PeakIO' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/PeakIO.c -o build/temp.linux-loongarch64-cpython-313/MACS3/IO/PeakIO.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PosReadsInfo.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-loongarch64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-loongarch64-cpython-313/MACS3/IO/BedGraphIO.o -w -O3 loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PeakVariants.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-loongarch64-linux-gnu.so building 'MACS3.IO.BAM' extension loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BAM.c -o build/temp.linux-loongarch64-cpython-313/MACS3/IO/BAM.o -w -O3 loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/misc.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rle.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rope.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/ScoreTrack.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/RACollection.o build/temp.linux-loongarch64-cpython-313/MACS3/Signal/swalign.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/bfc.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/bseq.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/bubble.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/htab.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/ksw.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/kthread.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/mag.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/misc.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/mrope.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/rld0.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/rle.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/rope.o build/temp.linux-loongarch64-cpython-313/MACS3/fermi-lite/unitig.o -L/usr/lib/loongarch64-linux-gnu -lm -lz -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/RACollection.cpython-313-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/PairedEndTrack.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/IO/BedGraphIO.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/Signal/BedGraph.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-313/MACS3/Signal/BedGraph.cpython-313-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/IO/BAM.o -L/usr/lib/loongarch64-linux-gnu -lm -o build/lib.linux-loongarch64-cpython-313/MACS3/IO/BAM.cpython-313-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/IO/Parser.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/IO/Parser.cpython-313-loongarch64-linux-gnu.so loongarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-loongarch64-cpython-313/MACS3/IO/PeakIO.o -L/usr/lib/loongarch64-linux-gnu -o build/lib.linux-loongarch64-cpython-313/MACS3/IO/PeakIO.cpython-313-loongarch64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting bin/macs3 -> build/scripts-3.13 changing mode of build/scripts-3.13/macs3 from 644 to 755 installing to build/bdist.linux-loongarch64/wheel running install running install_lib creating build/bdist.linux-loongarch64/wheel creating build/bdist.linux-loongarch64/wheel/MACS3 creating build/bdist.linux-loongarch64/wheel/MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/kthread.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/mrope.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/ksw.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/rld0.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/rle.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/example.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/mag.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/fml.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/bfc.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/internal.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/unitig.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/ksw.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/mrope.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/misc.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/rld0.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/kvec.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/ksort.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/htab.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/bseq.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/rle.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/kstring.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/bubble.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/htab.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/mag.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/kmer.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/khash.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/rope.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/kseq.h -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite copying build/lib.linux-loongarch64-cpython-313/MACS3/fermi-lite/rope.c -> build/bdist.linux-loongarch64/wheel/./MACS3/fermi-lite creating build/bdist.linux-loongarch64/wheel/MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands copying build/lib.linux-loongarch64-cpython-313/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Commands creating build/bdist.linux-loongarch64/wheel/MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/RACollection.pxd -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakModel.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/SignalProcessing.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PosReadsInfo.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PairedEndTrack.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Prob.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/ScoreTrack.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/cPosValCalculation.h -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Region.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/BedGraph.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/cPosValCalculation.c -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Region.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PileupV2.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/swalign.c -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakModel.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Pileup.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/FixWidthTrack.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakVariants.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_HMM.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/ReadAlignment.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Prob.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/CallPeakUnit.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/VariantStat.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/Pileup.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/VariantStat.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PileupV2.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/RACollection.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/swalign.h -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_EM.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/BedGraph.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/RACollection.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/PeakDetect.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/UnitigRACollection.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/Signal/cPosValCalculation.pxd -> build/bdist.linux-loongarch64/wheel/./MACS3/Signal copying build/lib.linux-loongarch64-cpython-313/MACS3/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3 creating build/bdist.linux-loongarch64/wheel/MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/PeakIO.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/BedGraphIO.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/BAM.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/BAM.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/Parser.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/OutputWriter.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/PeakIO.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3/IO copying build/lib.linux-loongarch64-cpython-313/MACS3/IO/Parser.cpython-313-loongarch64-linux-gnu.so -> build/bdist.linux-loongarch64/wheel/./MACS3/IO creating build/bdist.linux-loongarch64/wheel/MACS3/Utilities copying build/lib.linux-loongarch64-cpython-313/MACS3/Utilities/Constants.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Utilities copying build/lib.linux-loongarch64-cpython-313/MACS3/Utilities/__init__.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Utilities copying build/lib.linux-loongarch64-cpython-313/MACS3/Utilities/Logger.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Utilities copying build/lib.linux-loongarch64-cpython-313/MACS3/Utilities/OptValidator.py -> build/bdist.linux-loongarch64/wheel/./MACS3/Utilities running install_egg_info Copying MACS3.egg-info to build/bdist.linux-loongarch64/wheel/./MACS3-3.0.4.egg-info running install_scripts creating build/bdist.linux-loongarch64/wheel/macs3-3.0.4.data/scripts copying build/scripts-3.13/macs3 -> build/bdist.linux-loongarch64/wheel/macs3-3.0.4.data/scripts changing mode of build/bdist.linux-loongarch64/wheel/macs3-3.0.4.data/scripts/macs3 to 755 creating build/bdist.linux-loongarch64/wheel/macs3-3.0.4.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/.tmp-dw5bgxbn/macs3-3.0.4-cp313-cp313-linux_loongarch64.whl' and adding 'build/bdist.linux-loongarch64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/IO/BAM.py' adding 'MACS3/IO/BedGraphIO.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.py' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/IO/Parser.py' adding 'MACS3/IO/PeakIO.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/IO/PeakIO.py' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/BedGraph.py' adding 'MACS3/Signal/CallPeakUnit.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.py' adding 'MACS3/Signal/FixWidthTrack.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.py' adding 'MACS3/Signal/HMMR_EM.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.py' adding 'MACS3/Signal/HMMR_HMM.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.py' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.py' adding 'MACS3/Signal/PairedEndTrack.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.py' adding 'MACS3/Signal/PeakDetect.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.py' adding 'MACS3/Signal/PeakModel.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.py' adding 'MACS3/Signal/PeakVariants.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.py' adding 'MACS3/Signal/Pileup.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/Pileup.py' adding 'MACS3/Signal/PileupV2.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.py' adding 'MACS3/Signal/PosReadsInfo.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.py' adding 'MACS3/Signal/Prob.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/Prob.py' adding 'MACS3/Signal/RACollection.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/RACollection.pxd' adding 'MACS3/Signal/RACollection.py' adding 'MACS3/Signal/ReadAlignment.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.py' adding 'MACS3/Signal/Region.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/Region.py' adding 'MACS3/Signal/ScoreTrack.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.py' adding 'MACS3/Signal/SignalProcessing.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.py' adding 'MACS3/Signal/UnitigRACollection.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.py' adding 'MACS3/Signal/VariantStat.cpython-313-loongarch64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.py' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Signal/cPosValCalculation.c' adding 'MACS3/Signal/cPosValCalculation.h' adding 'MACS3/Signal/cPosValCalculation.pxd' adding 'MACS3/Signal/swalign.c' adding 'MACS3/Signal/swalign.h' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'MACS3/fermi-lite/bfc.c' adding 'MACS3/fermi-lite/bseq.c' adding 'MACS3/fermi-lite/bubble.c' adding 'MACS3/fermi-lite/example.c' adding 'MACS3/fermi-lite/fml.h' adding 'MACS3/fermi-lite/htab.c' adding 'MACS3/fermi-lite/htab.h' adding 'MACS3/fermi-lite/internal.h' adding 'MACS3/fermi-lite/khash.h' adding 'MACS3/fermi-lite/kmer.h' adding 'MACS3/fermi-lite/kseq.h' adding 'MACS3/fermi-lite/ksort.h' adding 'MACS3/fermi-lite/kstring.h' adding 'MACS3/fermi-lite/ksw.c' adding 'MACS3/fermi-lite/ksw.h' adding 'MACS3/fermi-lite/kthread.c' adding 'MACS3/fermi-lite/kvec.h' adding 'MACS3/fermi-lite/mag.c' adding 'MACS3/fermi-lite/mag.h' adding 'MACS3/fermi-lite/misc.c' adding 'MACS3/fermi-lite/mrope.c' adding 'MACS3/fermi-lite/mrope.h' adding 'MACS3/fermi-lite/rld0.c' adding 'MACS3/fermi-lite/rld0.h' adding 'MACS3/fermi-lite/rle.c' adding 'MACS3/fermi-lite/rle.h' adding 'MACS3/fermi-lite/rope.c' adding 'MACS3/fermi-lite/rope.h' adding 'MACS3/fermi-lite/unitig.c' adding 'macs3-3.0.4.data/scripts/macs3' adding 'macs3-3.0.4.dist-info/licenses/LICENSE' adding 'macs3-3.0.4.dist-info/METADATA' adding 'macs3-3.0.4.dist-info/WHEEL' adding 'macs3-3.0.4.dist-info/top_level.txt' adding 'macs3-3.0.4.dist-info/RECORD' removing build/bdist.linux-loongarch64/wheel Successfully built macs3-3.0.4-cp313-cp313-linux_loongarch64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.13 with "installer" module PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info \ --name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs3_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info --version-string="3.0.4" \ --include debian/macs3_${subcommand}-man-include \ "python3 bin/macs3 ${subcommand}" > \ debian/macs3_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' dh_auto_test I: pybuild base:385: cd /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build; python3.14 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.14.5, pytest-9.0.3, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 93 items test/test_BAMBAI.py ........... [ 11%] test/test_BedGraph.py .. [ 13%] test/test_BedGraphIO.py .. [ 16%] test/test_CallPeakUnit.py ....s [ 21%] test/test_FixWidthTrack.py .... [ 25%] test/test_HMMR_HMM.py s. [ 27%] test/test_HMMR_poisson.py .. [ 30%] test/test_PairedEndTrack.py ................ [ 47%] test/test_Parser.py .... [ 51%] test/test_PeakDetect.py ... [ 54%] test/test_PeakIO.py . [ 55%] test/test_PeakModel.py .ss [ 59%] test/test_Pileup.py .......... [ 69%] test/test_Prob.py ................ [ 87%] test/test_Region.py ..... [ 92%] test/test_ScoreTrack.py .... [ 96%] test/test_SignalProcessing.py .. [ 98%] test/test_online.py . [100%] ======================== 89 passed, 4 skipped in 40.28s ======================== I: pybuild base:385: cd /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/build; python3.13 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.13.12, pytest-9.0.3, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 93 items test/test_BAMBAI.py ........... [ 11%] test/test_BedGraph.py .. [ 13%] test/test_BedGraphIO.py .. [ 16%] test/test_CallPeakUnit.py ....s [ 21%] test/test_FixWidthTrack.py .... [ 25%] test/test_HMMR_HMM.py s. [ 27%] test/test_HMMR_poisson.py .. [ 30%] test/test_PairedEndTrack.py ................ [ 47%] test/test_Parser.py .... [ 51%] test/test_PeakDetect.py ... [ 54%] test/test_PeakIO.py . [ 55%] test/test_PeakModel.py .ss [ 59%] test/test_Pileup.py .......... [ 69%] test/test_Prob.py ................ [ 87%] test/test_Region.py ..... [ 92%] test/test_ScoreTrack.py .... [ 96%] test/test_SignalProcessing.py .. [ 98%] test/test_online.py . [100%] ======================== 89 passed, 4 skipped in 39.11s ======================== cd test && for PY3VER in 3.14 3.13; do \ export PATH=/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_${PY3VER}_MACS3/scripts:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_${PY3VER}_MACS3/build \ && ./cmdlinetest macs3.0.4-1-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 1.4 callpeak with fragment file w/ or w/o barcodes file 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 15.2 hmmratac load hmm model file 15.3 hmmratac scATAC test 16. search for errors in log files checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_barcode.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_scatac.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking callpeak_frag run_callpeak_frag_barcode_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak ... success! Results are the same! 16.11.2 checking callpeak_frag run_callpeak_frag_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_peaks.narrowPeak ... success! Results are the same! 16.12.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.12.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.12.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.13.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.13.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.14.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.14.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.14.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.14.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.14.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.14.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.15.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.15.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.16.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.16.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.17.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.17.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.17.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.18.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.4-1-3.14_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.19.1 checking hmmratac hmmratac_scatac_test_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak ... success! Results are the same! 16.19.2 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.3 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.4 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.5 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.6 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.7 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.8 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.9 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 1.4 callpeak with fragment file w/ or w/o barcodes file 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 15.2 hmmratac load hmm model file 15.3 hmmratac scATAC test 16. search for errors in log files checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_barcode.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_scatac.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking callpeak_frag run_callpeak_frag_barcode_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak ... success! Results are the same! 16.11.2 checking callpeak_frag run_callpeak_frag_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_peaks.narrowPeak ... success! Results are the same! 16.12.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.12.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.12.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.13.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.13.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.14.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.14.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.14.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.14.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.14.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.14.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.15.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.15.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.16.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.16.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.17.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.17.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.17.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.18.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.4-1-3.13_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.19.1 checking hmmratac hmmratac_scatac_test_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak ... success! Results are the same! 16.19.2 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.3 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.4 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.5 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.6 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.7 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.8 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.9 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 18. brief speed test CPU time (mm:ss): 00:04:01 Max mem (KB): 273504 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir I: pybuild plugin_pyproject:199: Copying package built for python3.13 to destdir dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' dh_python3 -a -O--buildsystem=pybuild I: dh_python3 tools:128: replacing shebang in debian/macs/usr/bin/macs3 dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-loongarch-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-loongarch-lp64d.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'macs' in '../macs_3.0.4-1_loong64.deb'. dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_3.0.4-1_loong64.deb'. dpkg-genbuildinfo --build=any -O../macs_3.0.4-1_loong64.buildinfo dpkg-genchanges --build=any -O../macs_3.0.4-1_loong64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from /build/reproducible-path/macs-3.0.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-06-12T19:38:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 12 Jun 2026 19:38:18 +0000 | +------------------------------------------------------------------------------+ macs_3.0.4-1_loong64.changes: ----------------------------- Format: 1.8 Date: Thu, 14 May 2026 11:00:44 +0200 Source: macs Binary: macs macs-dbgsym Architecture: loong64 Version: 3.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Changes: macs (3.0.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.7.4 (routine-update) * debputy lint --auto-fix (routine-update) * Refreshed patches, dropping one that is no longer applicable. * Add missing build dependency on python3-numpy-dev for command dh_numpy3. * Set upstream metadata fields: Documentation, Repository, Repository-Browse. * d/copyright: clarify with files are expat licensed Checksums-Sha1: 37fae8fa5d77bd4ff5871ecaa7306bae041f7882 27416136 macs-dbgsym_3.0.4-1_loong64.deb d1c4ba639244ed260db6b3fcd78d3968bd1ecdd8 7231 macs_3.0.4-1_loong64.buildinfo d6335187adea419deaa6404e73318f17dc832fe3 4319904 macs_3.0.4-1_loong64.deb Checksums-Sha256: ec2636cdea2616fda5e00a396fbfb918812bb8f56f460d3405580878b75e1c83 27416136 macs-dbgsym_3.0.4-1_loong64.deb 890fa83331e83d444f818bb5d8f980ebefb727a2ed4a1f469205d28702541f50 7231 macs_3.0.4-1_loong64.buildinfo 28d58475d9ee2073837f06673f8cf09c421c3cfc3370dae9ac4b39a6222192b2 4319904 macs_3.0.4-1_loong64.deb Files: 8ddb98402f80812854e64c705e5e0031 27416136 debug optional macs-dbgsym_3.0.4-1_loong64.deb cbb242b679c865adb171549fbbc9dff3 7231 science optional macs_3.0.4-1_loong64.buildinfo 65dfa612c93d47e1e194fe79f1de9dff 4319904 science optional macs_3.0.4-1_loong64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 12 Jun 2026 19:38:20 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: macs Binary: macs macs-dbgsym Architecture: loong64 Version: 3.0.4-1 Checksums-Md5: 8ddb98402f80812854e64c705e5e0031 27416136 macs-dbgsym_3.0.4-1_loong64.deb 65dfa612c93d47e1e194fe79f1de9dff 4319904 macs_3.0.4-1_loong64.deb Checksums-Sha1: 37fae8fa5d77bd4ff5871ecaa7306bae041f7882 27416136 macs-dbgsym_3.0.4-1_loong64.deb d6335187adea419deaa6404e73318f17dc832fe3 4319904 macs_3.0.4-1_loong64.deb Checksums-Sha256: ec2636cdea2616fda5e00a396fbfb918812bb8f56f460d3405580878b75e1c83 27416136 macs-dbgsym_3.0.4-1_loong64.deb 28d58475d9ee2073837f06673f8cf09c421c3cfc3370dae9ac4b39a6222192b2 4319904 macs_3.0.4-1_loong64.deb Build-Origin: Debian Build-Architecture: loong64 Build-Date: Fri, 12 Jun 2026 19:38:14 +0000 Build-Path: /build/reproducible-path/macs-3.0.4 Installed-Build-Depends: autoconf (= 2.72-6), automake (= 1:1.18.1-4), autopoint (= 0.23.2-2), autotools-dev (= 20240727.1+nmu1), base-files (= 14.0), base-passwd (= 3.6.8+b1), bash (= 5.3-3), bc (= 1.07.1-4+b1), binutils (= 2.46-3), binutils-common (= 2.46-3), binutils-loongarch64-linux-gnu (= 2.46-3), bsdextrautils (= 2.42-6), build-essential (= 12.12+b1), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260223), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.2.0-17), cpp-15-loongarch64-linux-gnu (= 15.2.0-17), cpp-loongarch64-linux-gnu (= 4:15.2.0-5+b1), cython3 (= 3.1.6+dfsg-2+b1), dash (= 0.5.12-12+b1), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2+b1), dh-autoreconf (= 22), dh-python (= 7.20260309), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.46-5+b2), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.2.0-17), g++-15-loongarch64-linux-gnu (= 15.2.0-17), g++-loongarch64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.2.0-17), gcc-15-base (= 15.2.0-17), gcc-15-loongarch64-linux-gnu (= 15.2.0-17), gcc-16-base (= 16.1.0-1), gcc-loongarch64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 0.23.2-2), gettext-base (= 0.23.2-2), grep (= 3.12-1+b1), groff-base (= 1.24.1-1), gzip (= 1.13-1+b1), help2man (= 1.49.3+b1), hostname (= 3.25+b1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-1), libatomic1 (= 16.1.0-1), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-3), libblas3 (= 3.12.1-7+b2), libblkid1 (= 2.42-6), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-16), libc-dev-bin (= 2.42-16), libc-gconv-modules-extra (= 2.42-16), libc6 (= 2.42-16), libc6-dev (= 2.42-16), libcap-ng0 (= 0.9.3-1), libcc1-0 (= 16.1.0-1), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46-3), libctf0 (= 2.46-3), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.282+b3), libdebhelper-perl (= 13.31), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libexpat1 (= 2.8.0-2), libexpat1-dev (= 2.8.0-2), libffi8 (= 3.5.2-4), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-17), libgcc-s1 (= 16.1.0-1), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran5 (= 16.1.0-1), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-1), libisl23 (= 0.27-2), libitm1 (= 16.1.0-1), libjansson4 (= 2.14-2+b4), libjs-sphinxdoc (= 9.1.0-3), liblapack3 (= 3.12.1-7+b2), liblocale-gettext-perl (= 1.07-9), liblsan0 (= 16.1.0-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.46-5+b2), libmagic1t64 (= 1:5.46-5+b2), libmd0 (= 1.2.0-1), libmount1 (= 2.42-6), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20251231-1+b1), libpam-modules (= 1.7.0-5+b2), libpam-modules-bin (= 1.7.0-5+b2), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b2), libpcre2-8-0 (= 10.46-1+b2), libperl5.40 (= 5.40.1-7+b1), libpipeline1 (= 1.5.8-3), libproc2-0 (= 2:4.0.4-9+b2), libpython3-all-dev (= 3.13.9-3+b1), libpython3-dev (= 3.13.9-3+b1), libpython3-stdlib (= 3.13.9-3+b1), libpython3.13 (= 3.13.12-1), libpython3.13-dev (= 3.13.12-1), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libpython3.14 (= 3.14.5-1), libpython3.14-dev (= 3.14.5-1), libpython3.14-minimal (= 3.14.5-1), libpython3.14-stdlib (= 3.14.5-1), libqhull-r8.0 (= 2020.2-9), libreadline8t64 (= 8.3-4), libselinux1 (= 3.10-1), libsframe3 (= 2.46-3), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.42-6), libsqlite3-0 (= 3.46.1-9+b1), libssl3t64 (= 3.6.2-1), libstdc++-15-dev (= 15.2.0-17), libstdc++6 (= 16.1.0-1), libsystemd0 (= 260.1-1), libtinfo6 (= 6.6+20251231-1+b1), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-1), libubsan1 (= 16.1.0-1), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 260.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42-6), libxml2-16 (= 2.15.2+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.0.4-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1+b1), netbase (= 6.5), openssl (= 3.6.2-1), openssl-provider-legacy (= 3.6.2-1), patch (= 2.8-2+b1), perl (= 5.40.1-7+b1), perl-base (= 5.40.1-7+b1), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b2), pybuild-plugin-pyproject (= 7.20260309), python3 (= 3.13.9-3+b1), python3-all (= 3.13.9-3+b1), python3-all-dev (= 3.13.9-3+b1), python3-autocommand (= 2.2.2-4), python3-build (= 1.4.0-1), python3-cykhash (= 2.0.0-3+b1), python3-decorator (= 5.2.1-2), python3-dev (= 3.13.9-3+b1), python3-hmmlearn (= 0.3.3-1), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-2), python3-installer (= 1.0.0+dfsg1-1), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-joblib (= 1.5.2-1), python3-minimal (= 3.13.9-3+b1), python3-more-itertools (= 10.8.0-1), python3-numpy (= 1:2.4.4+ds-2), python3-numpy-dev (= 1:2.4.4+ds-2), python3-packaging (= 26.0-1), python3-pip (= 26.0.1+dfsg-1), python3-pkg-resources (= 78.1.1-0.1), python3-pluggy (= 1.6.0-2), python3-pygments (= 2.19.2+dfsg-1), python3-pyproject-hooks (= 1.2.0-1), python3-pytest (= 9.0.3-1), python3-scipy (= 1.16.3-4+b1), python3-setuptools (= 78.1.1-0.1), python3-sklearn (= 1.8.0+dfsg-4), python3-sklearn-lib (= 1.8.0+dfsg-4), python3-threadpoolctl (= 3.1.0-1), python3-typeguard (= 4.4.4-2), python3-typing-extensions (= 4.15.0-2), python3-wheel (= 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python3-hmmlearn, python3-numpy, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.42), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/taoliu/MACS/ Description: Model-based Analysis of ChIP-Seq on short reads sequencers MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples. drwxr-xr-x root/root 0 2026-05-14 09:00 ./ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/bin/ -rwxr-xr-x root/root 99907 2026-05-14 09:00 ./usr/bin/macs3 drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/ -rw-r--r-- root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/__init__.py -rw-r--r-- root/root 1848 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/bdgbroadcall_cmd.py -rw-r--r-- root/root 3384 2026-05-14 09:00 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Architecture: loong64 Build Type: any Build-Space: 3050044 Build-Time: 3183 Distribution: unstable Host Architecture: loong64 Install-Time: 25 Job: /srv/rebuilderd/tmp/rebuilderdSnjyLY/inputs/macs_3.0.4-1.dsc Machine Architecture: loong64 Package: macs Package-Time: 3275 Source-Version: 3.0.4-1 Space: 3050044 Status: successful Version: 3.0.4-1 -------------------------------------------------------------------------------- Finished at 2026-06-12T19:38:15Z Build needed 00:54:35, 3050044k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdSnjyLY/out checking macs-dbgsym_3.0.4-1_loong64.deb: size differs for macs-dbgsym_3.0.4-1_loong64.deb